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Aliases for RETN Gene

Aliases for RETN Gene

  • Resistin 2 3 3 5
  • C/EBP-Epsilon-Regulated Myeloid-Specific Secreted Cysteine-Rich Protein 3 4
  • Cysteine-Rich Secreted Protein A12-Alpha-Like 2 3 4
  • Adipose Tissue-Specific Secretory Factor 3 4
  • Cysteine-Rich Secreted Protein FIZZ3 3 4
  • FIZZ3 3 4
  • ADSF 3 4
  • RSTN 3 4
  • C/EBP-Epsilon Regulated Myeloid-Specific Secreted Cysteine-Rich Protein Precursor 1 3
  • Found In Inflammatory Zone 3 3
  • Resistin Delta2 3
  • RETN1 3
  • HXCP1 4
  • XCP1 3

External Ids for RETN Gene

Previous GeneCards Identifiers for RETN Gene

  • GC19P007838
  • GC19P007628
  • GC19P007639
  • GC19P007733
  • GC19P007403

Summaries for RETN Gene

Entrez Gene Summary for RETN Gene

  • This gene belongs to the family defined by the mouse resistin-like genes. The characteristic feature of this family is the C-terminal stretch of 10 cys residues with identical spacing. The mouse homolog of this protein is secreted by adipocytes, and may be the hormone potentially linking obesity to type II diabetes. Alternatively spliced transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2010]

GeneCards Summary for RETN Gene

RETN (Resistin) is a Protein Coding gene. Diseases associated with RETN include Diabetes Mellitus, Noninsulin-Dependent and Acquired Generalized Lipodystrophy. Among its related pathways are Innate Immune System and Adipogenesis. GO annotations related to this gene include hormone activity. An important paralog of this gene is RETNLB.

UniProtKB/Swiss-Prot for RETN Gene

  • Hormone that seems to suppress insulin ability to stimulate glucose uptake into adipose cells. Potentially links obesity to diabetes.

Gene Wiki entry for RETN Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RETN Gene

Genomics for RETN Gene

Regulatory Elements for RETN Gene

Enhancers for RETN Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G007668 0.9 Ensembl ENCODE 16.2 +0.9 861 2.6 NRF1 HLF MAX CEBPB CEBPG ZNF121 GLIS1 CEBPA SCRT2 MYC RETN ENSG00000268204 MCEMP1
GH19G007196 2 FANTOM5 Ensembl ENCODE dbSUPER 5.4 -470.4 -470352 5.0 CREB3L1 MLX DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 GLIS1 ELAVL1 XAB2 ZNF557 ARHGEF18 GTF2F1 PSPN INSR RETN CAMSAP3 GC19P007214
GH19G007651 1.3 Ensembl ENCODE 6 -16.5 -16453 1.8 FOXA2 MLX CREB3L1 ARID4B DMAP1 ZNF2 ZNF766 ZNF207 ZNF143 SP5 XAB2 RETN RPS27AP19 ENSG00000268204
GH19G008050 1.5 FANTOM5 Ensembl ENCODE 5.2 +383.4 383406 4.9 HDGF PKNOX1 FOXA2 ATF1 ARNT TCF12 ZNF263 SP3 ZNF623 ZNF592 RETN MCEMP1 STXBP2 PRAM1 CCL25 GC19M008058
GH19G007628 1.1 ENCODE 6.7 -39.5 -39458 2.7 PKNOX1 FOXA2 CREB3L1 ARNT WRNIP1 ARID4B SIN3A ZNF2 YY1 SLC30A9 XAB2 PET100 ELAVL1 HNRNPM ENSG00000269680 RETN PCP2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around RETN on UCSC Golden Path with GeneCards custom track

Genomic Location for RETN Gene

Chromosome:
19
Start:
7,669,044 bp from pter
End:
7,670,454 bp from pter
Size:
1,411 bases
Orientation:
Plus strand

Genomic View for RETN Gene

Genes around RETN on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RETN Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RETN Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RETN Gene

Proteins for RETN Gene

  • Protein details for RETN Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9HD89-RETN_HUMAN
    Recommended name:
    Resistin
    Protein Accession:
    Q9HD89
    Secondary Accessions:
    • D6W649
    • Q540D9
    • Q76B53

    Protein attributes for RETN Gene

    Size:
    108 amino acids
    Molecular mass:
    11419 Da
    Quaternary structure:
    • Homodimer; disulfide-linked.

    Three dimensional structures from OCA and Proteopedia for RETN Gene

    Alternative splice isoforms for RETN Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RETN Gene

Post-translational modifications for RETN Gene

No Post-translational modifications

Other Protein References for RETN Gene

Antibody Products

Protein Products

Assay Products

  • Cloud-Clone Corp Assay Kits for RETN

No data available for DME Specific Peptides for RETN Gene

Domains & Families for RETN Gene

Protein Domains for RETN Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for RETN Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9HD89

UniProtKB/Swiss-Prot:

RETN_HUMAN :
  • Belongs to the resistin/FIZZ family.
Family:
  • Belongs to the resistin/FIZZ family.
genes like me logo Genes that share domains with RETN: view

No data available for Gene Families for RETN Gene

Function for RETN Gene

Molecular function for RETN Gene

UniProtKB/Swiss-Prot Function:
Hormone that seems to suppress insulin ability to stimulate glucose uptake into adipose cells. Potentially links obesity to diabetes.

Gene Ontology (GO) - Molecular Function for RETN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005179 hormone activity IBA --
genes like me logo Genes that share ontologies with RETN: view
genes like me logo Genes that share phenotypes with RETN: view

Animal Models for RETN Gene

MGI Knock Outs for RETN:

Animal Model Products

  • Taconic Biosciences Mouse Models for RETN

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for RETN Gene

Localization for RETN Gene

Subcellular locations from UniProtKB/Swiss-Prot for RETN Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for RETN gene
Compartment Confidence
extracellular 5
lysosome 4
nucleus 3
peroxisome 2
cytosol 2
plasma membrane 1
cytoskeleton 1
mitochondrion 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for RETN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005615 extracellular space IBA --
GO:0005634 nucleus IEA --
GO:0035578 azurophil granule lumen TAS --
GO:0035580 specific granule lumen TAS --
genes like me logo Genes that share ontologies with RETN: view

Pathways & Interactions for RETN Gene

genes like me logo Genes that share pathways with RETN: view

Pathways by source for RETN Gene

1 BioSystems pathway for RETN Gene
3 Reactome pathways for RETN Gene
1 R&D Systems pathway for RETN Gene

Interacting Proteins for RETN Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://version10.5.string-db.org/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000221515%0d%0a9606.ENSP00000231509%0d%0a9606.ENSP00000221494%0d%0a
Selected Interacting proteins: Q9HD89-RETN_HUMAN ENSP00000221515 for RETN Gene via IID STRING

Gene Ontology (GO) - Biological Process for RETN Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007568 aging IEA --
GO:0008150 biological_process ND --
GO:0009612 response to mechanical stimulus IEA --
GO:0010714 positive regulation of collagen metabolic process IEA --
GO:0014911 positive regulation of smooth muscle cell migration IEA --
genes like me logo Genes that share ontologies with RETN: view

No data available for SIGNOR curated interactions for RETN Gene

Drugs & Compounds for RETN Gene

(28) Drugs for RETN Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials

(26) Additional Compounds for RETN Gene - From: Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
genes like me logo Genes that share compounds with RETN: view

Transcripts for RETN Gene

mRNA/cDNA for RETN Gene

(2) REFSEQ mRNAs :
(9) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for RETN Gene

Resistin:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for RETN Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b
SP1:
SP2: -

Relevant External Links for RETN Gene

GeneLoc Exon Structure for
RETN
ECgene alternative splicing isoforms for
RETN

Expression for RETN Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for RETN Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for RETN Gene

This gene is overexpressed in Whole Blood (x44.7).

Protein differential expression in normal tissues from HIPED for RETN Gene

This gene is overexpressed in Neutrophil (26.3) and Cervix (24.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for RETN Gene



Protein tissue co-expression partners for RETN Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of RETN Gene:

RETN

SOURCE GeneReport for Unigene cluster for RETN Gene:

Hs.283091

mRNA Expression by UniProt/SwissProt for RETN Gene:

Q9HD89-RETN_HUMAN
Tissue specificity: Expressed only in fatty tissues.

Evidence on tissue expression from TISSUES for RETN Gene

  • Nervous system(4.3)
  • Blood(3)
  • Bone marrow(2.5)
  • Liver(2.5)
  • Heart(2.2)
  • Lung(2.2)
  • Muscle(2.1)
  • Pancreas(2.1)
genes like me logo Genes that share expression patterns with RETN: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for RETN Gene

Orthologs for RETN Gene

This gene was present in the common ancestor of chordates.

Orthologs for RETN Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RETN 35
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RETN 34 35
  • 82.77 (n)
cow
(Bos Taurus)
Mammalia RETN 34 35
  • 82.24 (n)
rat
(Rattus norvegicus)
Mammalia Retn 34
  • 68.89 (n)
mouse
(Mus musculus)
Mammalia Retn 34 16 35
  • 68.5 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 48 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 41 (a)
ManyToMany
-- 35
  • 40 (a)
ManyToMany
Species where no ortholog for RETN was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for RETN Gene

ENSEMBL:
Gene Tree for RETN (if available)
TreeFam:
Gene Tree for RETN (if available)

Paralogs for RETN Gene

Paralogs for RETN Gene

(2) SIMAP similar genes for RETN Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RETN: view

Variants for RETN Gene

Sequence variations from dbSNP and Humsavar for RETN Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000255803 -- 7,669,729(+) CAGGG(A/T)CCTAG intron-variant
rs1000609582 -- 7,667,282(+) TGGCT(C/T)ACACC upstream-variant-2KB
rs1001611666 -- 7,668,139(+) CATGA(A/G)CTGGA upstream-variant-2KB
rs1001642765 -- 7,667,960(+) CCACT(A/G)CACTC upstream-variant-2KB
rs1003252498 -- 7,668,547(+) AGTTC(A/T)ATTGC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for RETN Gene

Variant ID Type Subtype PubMed ID
esv2751809 CNV gain 17911159
nsv1060887 CNV gain 25217958
nsv1061452 CNV gain 25217958
nsv833731 CNV loss 17160897
nsv953959 CNV deletion 24416366
nsv960780 CNV duplication 23825009

Variation tolerance for RETN Gene

Residual Variation Intolerance Score: 47.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.09; 1.98% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RETN Gene

Human Gene Mutation Database (HGMD)
RETN
SNPedia medical, phenotypic, and genealogical associations of SNPs for
RETN

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RETN Gene

Disorders for RETN Gene

MalaCards: The human disease database

(23) MalaCards diseases for RETN Gene - From: OMIM, ClinVar, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
diabetes mellitus, noninsulin-dependent
  • diabetes, type 2
acquired generalized lipodystrophy
  • acquired lipoatrophic diabetes
glucose intolerance
  • fatty stool
gestational diabetes
  • gdm
obesity
  • obesity, association with
- elite association - COSMIC cancer census association via MalaCards
Search RETN in MalaCards View complete list of genes associated with diseases

Relevant External Links for RETN

Genetic Association Database (GAD)
RETN
Human Genome Epidemiology (HuGE) Navigator
RETN
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RETN
genes like me logo Genes that share disorders with RETN: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RETN Gene

Publications for RETN Gene

  1. Association of variants in RETN with plasma resistin levels and diabetes-related traits in the Framingham Offspring Study. (PMID: 19074981) Hivert M.F. … Florez J.C. (Diabetes 2009) 3 22 46 64
  2. Adiponectin and resistin gene polymorphisms in patients with anorexia nervosa and obesity and its influence on metabolic phenotype. (PMID: 17705672) KrA-zovA! J. … HaluzA-k M. (Physiol Res 2008) 3 22 46 64
  3. Heritability of serum resistin and its genetic correlation with insulin resistance-related features in nondiabetic Caucasians. (PMID: 16670163) Menzaghi C. … Trischitta V. (J. Clin. Endocrinol. Metab. 2006) 3 22 46 64
  4. The G/G genotype of a resistin single-nucleotide polymorphism at -420 increases type 2 diabetes mellitus susceptibility by inducing promoter activity through specific binding of Sp1/3. (PMID: 15338456) Osawa H. … Makino H. (Am. J. Hum. Genet. 2004) 3 22 46 64
  5. Variation in resistin gene promoter not associated with polycystic ovary syndrome. (PMID: 12502516) Urbanek M. … Legro R.S. (Diabetes 2003) 3 22 46 64

Products for RETN Gene

Sources for RETN Gene

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