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Aliases for PSG2 Gene

Aliases for PSG2 Gene

  • Pregnancy Specific Beta-1-Glycoprotein 2 2 3
  • PSBG2 3 4 6
  • Pregnancy-Specific Beta-1-Glycoprotein 7 2 3
  • Pregnancy-Specific Beta-1 Glycoprotein E 3 4
  • Pregnancy-Specific Glycoprotein 2 3 4
  • Carcinoembryonic Antigen SG8 2 3
  • PS-Beta-G-2 3 4
  • PS-Beta-E 3 4
  • PSBG-2 3 4
  • Pregnancy-Specific Beta-1-Glycoprotein 2 3
  • Pregnancy-Specific Beta-1-Glycoprotein-2 3
  • Pregnancy-Specific Beta-1 Glycoprotein 2
  • PSG1 3
  • CEA 3

External Ids for PSG2 Gene

Previous HGNC Symbols for PSG2 Gene

  • PSBG2

Previous GeneCards Identifiers for PSG2 Gene

  • GC19M044217
  • GC19M043763
  • GC19M048083
  • GC19M048099
  • GC19M048260
  • GC19M048122
  • GC19M043568
  • GC19M040000

Summaries for PSG2 Gene

Entrez Gene Summary for PSG2 Gene

  • The human pregnancy-specific glycoproteins (PSGs) are a family of proteins that are synthesized in large amounts by placental trophoblasts and released into the maternal circulation during pregnancy. Molecular cloning and analysis of several PSG genes has indicated that the PSGs form a subgroup of the carcinoembryonic antigen (CEA) gene family, which belongs to the immunoglobulin superfamily of genes. Members of the CEA family consist of a single N domain, with structural similarity to the immunoglobulin variable domains, followed by a variable number of immunoglobulin constant-like A and/or B domains. Most PSGs have an arg-gly-asp (RGD) motif, which has been shown to function as an adhesion recognition signal for several integrins, in the N-terminal domain (summary by Teglund et al., 1994 [PubMed 7851896]). For additional general information about the PSG gene family, see PSG1 (MIM 176390).[supplied by OMIM, Oct 2009]

GeneCards Summary for PSG2 Gene

PSG2 (Pregnancy Specific Beta-1-Glycoprotein 2) is a Protein Coding gene. Diseases associated with PSG2 include secretory meningioma and apocrine adenoma. Among its related pathways are Signaling by GPCR and Disease. An important paralog of this gene is CEACAM8.

Gene Wiki entry for PSG2 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PSG2 Gene

Genomics for PSG2 Gene

Genomic Location for PSG2 Gene

Start:
43,064,210 bp from pter
End:
43,083,045 bp from pter
Size:
18,836 bases
Orientation:
Minus strand

Genomic View for PSG2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for PSG2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PSG2 Gene

Proteins for PSG2 Gene

  • Protein details for PSG2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P11465-PSG2_HUMAN
    Recommended name:
    Pregnancy-specific beta-1-glycoprotein 2
    Protein Accession:
    P11465
    Secondary Accessions:
    • Q8TCD9
    • Q9UEA4
    • Q9UQ78

    Protein attributes for PSG2 Gene

    Size:
    335 amino acids
    Molecular mass:
    37216 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PSG2 Gene

Proteomics data for PSG2 Gene at MOPED

Post-translational modifications for PSG2 Gene

  • Glycosylation at Asn61, Asn104, Asn111, and Asn199
  • Modification sites at PhosphoSitePlus

Other Protein References for PSG2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for PSG2 Gene

Domains for PSG2 Gene

Gene Families for PSG2 Gene

HGNC:
  • IGD :Immunoglobulin superfamily / Immunoglobulin-like domain containing
  • VSET :Immunoglobulin superfamily / V-set domain containing

Protein Domains for PSG2 Gene

Suggested Antigen Peptide Sequences for PSG2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P11465

UniProtKB/Swiss-Prot:

PSG2_HUMAN :
  • P11465
Domain:
  • Contains 2 Ig-like C2-type (immunoglobulin-like) domains.
  • Contains 1 Ig-like V-type (immunoglobulin-like) domain.
Family:
  • Belongs to the immunoglobulin superfamily. CEA family.
genes like me logo Genes that share domains with PSG2: view

Function for PSG2 Gene

Molecular function for PSG2 Gene

GENATLAS Biochemistry: pregnancy specific beta-1-glycoprotein 2,expressed by placental syncytiotrophoblasts,unknown function,carcinoembryonic antigen (CEA family),immunoglobulin superfamily

Gene Ontology (GO) - Molecular Function for PSG2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with PSG2: view

miRNA for PSG2 Gene

miRTarBase miRNAs that target PSG2

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for PSG2 Gene

Localization for PSG2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for PSG2 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for PSG2 Gene COMPARTMENTS Subcellular localization image for PSG2 gene
Compartment Confidence
extracellular 3
cytosol 1
endoplasmic reticulum 1
mitochondrion 1
nucleus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for PSG2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with PSG2: view

Pathways for PSG2 Gene

genes like me logo Genes that share pathways with PSG2: view

Interacting Proteins for PSG2 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000385706%0d%0a9606.ENSP00000387365%0d%0a
Selected Interacting proteins: P11465-PSG2_HUMAN ENSP00000385706 for PSG2 Gene via MINT STRING I2D

Gene Ontology (GO) - Biological Process for PSG2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007565 female pregnancy NAS 3260773
GO:0016477 cell migration NAS 3260773
genes like me logo Genes that share ontologies with PSG2: view

Compounds for PSG2 Gene

(35) Novoseek inferred chemical compound relationships for PSG2 Gene

Compound -log(P) Hits PubMed IDs
5-fluorocytosine 41.4 6
marimastat 38.4 4
sialic acid 38.1 21
b 723 36.7 2
sodium iodide 30.3 2
genes like me logo Genes that share compounds with PSG2: view

Transcripts for PSG2 Gene

mRNA/cDNA for PSG2 Gene

(4) Additional mRNA sequences :
(3) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for PSG2 Gene

Pregnancy specific beta-1-glycoprotein 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PSG2 Gene

No ASD Table

Relevant External Links for PSG2 Gene

GeneLoc Exon Structure for
PSG2
ECgene alternative splicing isoforms for
PSG2

Expression for PSG2 Gene

mRNA expression in normal human tissues for PSG2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for PSG2 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (4.4), Skin - Not Sun Exposed (Suprapubic) (4.3), and Adipose - Subcutaneous (4.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for PSG2 Gene

SOURCE GeneReport for Unigene cluster for PSG2 Gene Hs.709200

genes like me logo Genes that share expressions with PSG2: view

No data available for mRNA Expression by UniProt/SwissProt for PSG2 Gene

Orthologs for PSG2 Gene

This gene was present in the common ancestor of mammals.

Orthologs for PSG2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia PSG2 36
  • 93 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 20 (a)
ManyToMany
CEACAM1 36
  • 28 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm5155 36
  • 7 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 27 (a)
ManyToMany
Species with no ortholog for PSG2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for PSG2 Gene

ENSEMBL:
Gene Tree for PSG2 (if available)
TreeFam:
Gene Tree for PSG2 (if available)

Paralogs for PSG2 Gene

Selected SIMAP similar genes for PSG2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with PSG2: view

Variants for PSG2 Gene

Sequence variations from dbSNP and Humsavar for PSG2 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs17633 -- 43,064,242(-) TCATA(G/T)GTTTA utr-variant-3-prime
rs707746 -- 43,071,794(-) CCCCA(A/G/T)ATTAC reference, synonymous-codon, missense
rs1058086 - 43,075,527(-) CTACC(A/T)GTGGT reference, missense
rs1058091 -- 43,075,484(-) AGGTT(G/T)CAGCT missense, reference
rs1058095 -- 43,071,899(-) GGAGA(G/T)AACCT missense, reference

Structural Variations from Database of Genomic Variants (DGV) for PSG2 Gene

Variant ID Type Subtype PubMed ID
esv2422471 CNV Deletion 17116639
dgv15e196 CNV Deletion 17116639
dgv1087e1 CNV Complex 17122850
dgv1088e1 CNV Complex 17122850
dgv140e55 CNV Gain 17911159
nsv516973 CNV Gain+Loss 19592680
nsv9730 CNV Gain+Loss 18304495
dgv564e201 CNV Deletion 23290073
dgv3890n71 CNV Gain 21882294
dgv1089e1 CNV Complex 17122850
dgv141e55 CNV Loss 17911159
dgv3891n71 CNV Gain 21882294
nsv828554 CNV Gain 20364138
dgv3895n71 CNV Loss 21882294
nsv470143 CNV Gain 18288195
dgv409n27 CNV Loss 19166990
dgv410n27 CNV Gain 19166990
dgv411n27 CNV Loss 19166990
esv2663048 CNV Deletion 23128226
nsv911839 CNV Gain+Loss 21882294
dgv3898n71 CNV Loss 21882294
dgv1091e1 CNV Complex 17122850
esv22277 CNV Gain+Loss 19812545
dgv3901n71 CNV Loss 21882294
esv2718595 CNV Deletion 23290073
nsv817843 CNV Gain 17921354
nsv470145 CNV Loss 18288195
dgv3905n71 CNV Gain 21882294
dgv3906n71 CNV Loss 21882294
dgv565e201 CNV Deletion 23290073
dgv414n27 CNV Gain 19166990
dgv415n27 CNV Gain 19166990
dgv416n27 CNV Loss 19166990
dgv417n27 CNV Loss 19166990
esv2751794 CNV Gain 17911159
esv2718602 CNV Deletion 23290073
nsv458653 CNV Loss 19166990
dgv3919n71 CNV Loss 21882294
dgv3920n71 CNV Gain 21882294
dgv3921n71 CNV Loss 21882294
esv2421574 OTHER Complex 20811451
dgv419n27 CNV Gain 19166990
dgv3922n71 CNV Gain 21882294
nsv912001 CNV Gain 21882294
nsv833837 CNV Gain 17160897
nsv469727 CNV Loss 16826518
dgv3923n71 CNV Loss 21882294
dgv3924n71 CNV Loss 21882294
dgv1092e1 CNV Complex 17122850
nsv912016 CNV Gain+Loss 21882294
nsv912017 CNV Loss 21882294
dgv3925n71 CNV Gain 21882294
dgv3926n71 CNV Gain 21882294
dgv420n27 CNV Loss 19166990
dgv421n27 CNV Gain 19166990
nsv437832 CNV Loss 16327808
esv2657641 CNV Deletion 23128226
dgv1093e1 CNV Complex 17122850
nsv817844 CNV Loss 17921354
dgv1094e1 CNV Complex 17122850
dgv3927n71 CNV Gain 21882294
dgv3928n71 CNV Gain 21882294
dgv3929n71 CNV Gain 21882294
dgv3930n71 CNV Gain 21882294
esv2718603 CNV Deletion 23290073
dgv3931n71 CNV Loss 21882294
nsv912041 CNV Loss 21882294
nsv912042 CNV Gain+Loss 21882294
nsv912046 CNV Gain+Loss 21882294
nsv442767 CNV CNV 18776908
nsv912047 CNV Gain 21882294
dgv3932n71 CNV Gain 21882294
nsv912054 CNV Loss 21882294
esv2751795 CNV Loss 17911159
nsv817845 CNV Loss 17921354
dgv422n27 CNV Loss 19166990
nsv817846 CNV Gain+Loss 17921354
dgv3933n71 CNV Gain 21882294
dgv3934n71 CNV Loss 21882294
dgv3935n71 CNV Gain 21882294
nsv458700 CNV Loss 19166990
nsv817847 CNV Gain 17921354
dgv3936n71 CNV Gain 21882294
dgv3937n71 CNV Loss 21882294
nsv912073 CNV Loss 21882294

Relevant External Links for PSG2 Gene

HapMap Linkage Disequilibrium report
PSG2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for PSG2 Gene

Disorders for PSG2 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (17) Diseases for PSG2 Gene including...

Search for PSG2 Gene in MalaCards »

(97) Novoseek inferred disease relationships for PSG2 Gene

Disease -log(P) Hits PubMed IDs
tumors 73.4 206
colorectal cancer 70.6 124
thyroid carcinoma medullary 65.7 6
cancer 63.9 138
colon cancer 63 37
genes like me logo Genes that share disorders with PSG2: view

No data available for UniProtKB/Swiss-Prot for PSG2 Gene

Publications for PSG2 Gene

  1. Linkage of two human pregnancy-specific beta 1-glycoprotein genes: one is associated with hydatidiform mole. (PMID: 2377620) Leslie K.K. … Chou J.Y. (Proc. Natl. Acad. Sci. U.S.A. 1990) 2 3
  2. The human pregnancy-specific beta 1-glycoprotein (PS beta G) and the carcinoembryonic antigen (CEA)-related proteins are members of the same multigene family. (PMID: 3260773) Streydio C. … Vassart G. (Biochem. Biophys. Res. Commun. 1988) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. The DNA sequence and biology of human chromosome 19. (PMID: 15057824) Grimwood J. … Lucas S.M. (Nature 2004) 3 4
  5. Functional proteomics mapping of a human signaling pathway. (PMID: 15231748) Colland F. … Gauthier J.M. (Genome Res. 2004) 3

Products for PSG2 Gene

Sources for PSG2 Gene

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