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Aliases for RSBN1 Gene

Aliases for RSBN1 Gene

  • Round Spermatid Basic Protein 1 2 3
  • ROSBIN 3

External Ids for RSBN1 Gene

Summaries for RSBN1 Gene

GeneCards Summary for RSBN1 Gene

RSBN1 (Round Spermatid Basic Protein 1) is a Protein Coding gene. An important paralog of this gene is RSBN1L.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RSBN1 Gene

Genomics for RSBN1 Gene

Genomic Location for RSBN1 Gene

Start:
113,761,832 bp from pter
End:
113,812,476 bp from pter
Size:
50,645 bases
Orientation:
Minus strand

Genomic View for RSBN1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for RSBN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RSBN1 Gene

Regulatory Elements for RSBN1 Gene

Proteins for RSBN1 Gene

  • Protein details for RSBN1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VWQ0-RSBN1_HUMAN
    Recommended name:
    Round spermatid basic protein 1
    Protein Accession:
    Q5VWQ0
    Secondary Accessions:
    • A8K937
    • Q6AI21
    • Q8TC33
    • Q9HA80
    • Q9NUP6

    Protein attributes for RSBN1 Gene

    Size:
    802 amino acids
    Molecular mass:
    90072 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH26155.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAA92075.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB13974.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAH10493.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAH10493.1; Type=Miscellaneous discrepancy; Note=Aberrant splicing.; Evidence={ECO:0000305}; Sequence=CAH72507.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAI19067.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for RSBN1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RSBN1 Gene

Proteomics data for RSBN1 Gene at MOPED

Post-translational modifications for RSBN1 Gene

Other Protein References for RSBN1 Gene

No data available for DME Specific Peptides for RSBN1 Gene

Domains for RSBN1 Gene

Protein Domains for RSBN1 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

RSBN1_HUMAN
Family:
  • Belongs to the round spermatid basic protein 1 family.:
    • Q5VWQ0
genes like me logo Genes that share domains with RSBN1: view

No data available for Gene Families for RSBN1 Gene

Function for RSBN1 Gene

Gene Ontology (GO) - Molecular Function for RSBN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with RSBN1: view

Phenotypes for RSBN1 Gene

GenomeRNAi human phenotypes for RSBN1:
genes like me logo Genes that share phenotypes with RSBN1: view

miRNA for RSBN1 Gene

miRTarBase miRNAs that target RSBN1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for RSBN1 Gene

Localization for RSBN1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for RSBN1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RSBN1 Gene COMPARTMENTS Subcellular localization image for RSBN1 gene
Compartment Confidence
nucleus 3
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for RSBN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with RSBN1: view

Pathways for RSBN1 Gene

SuperPathways for RSBN1 Gene

No Data Available

Interacting Proteins for RSBN1 Gene

Gene Ontology (GO) - Biological Process for RSBN1 Gene

None

No data available for Pathways by source for RSBN1 Gene

Transcripts for RSBN1 Gene

Unigene Clusters for RSBN1 Gene

Round spermatid basic protein 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RSBN1 Gene

No ASD Table

Relevant External Links for RSBN1 Gene

GeneLoc Exon Structure for
RSBN1
ECgene alternative splicing isoforms for
RSBN1

Expression for RSBN1 Gene

mRNA expression in normal human tissues for RSBN1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for RSBN1 Gene

SOURCE GeneReport for Unigene cluster for RSBN1 Gene Hs.486285

genes like me logo Genes that share expressions with RSBN1: view

Orthologs for RSBN1 Gene

This gene was present in the common ancestor of animals.

Orthologs for RSBN1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RSBN1 36
  • 99.71 (n)
  • 99.88 (a)
RSBN1 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia RSBN1 36
  • 95.55 (n)
  • 95.51 (a)
RSBN1 37
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RSBN1 36
  • 95.71 (n)
  • 96.63 (a)
RSBN1 37
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rsbn1 36
  • 93.37 (n)
  • 95.09 (a)
Rsbn1 16
Rsbn1 37
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia RSBN1 37
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RSBN1 37
  • 90 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rsbn1 36
  • 93.49 (n)
  • 95.34 (a)
chicken
(Gallus gallus)
Aves RSBN1 36
  • 81.59 (n)
  • 86.5 (a)
RSBN1 37
  • 85 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RSBN1 37
  • 73 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rsbn1 36
  • 72.77 (n)
  • 79.35 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC100330644 36
  • 67.04 (n)
  • 73.53 (a)
RSBN1 37
  • 56 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG10600 37
  • 16 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea dpy-21 37
  • 11 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.789 37
  • 55 (a)
OneToMany
Species with no ortholog for RSBN1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RSBN1 Gene

ENSEMBL:
Gene Tree for RSBN1 (if available)
TreeFam:
Gene Tree for RSBN1 (if available)

Paralogs for RSBN1 Gene

Paralogs for RSBN1 Gene

Selected SIMAP similar genes for RSBN1 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with RSBN1: view

Variants for RSBN1 Gene

Sequence variations from dbSNP and Humsavar for RSBN1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs998315 -- 113,805,534(+) GTGCA(C/T)AGCAG intron-variant
rs1217375 -- 113,804,282(-) CTTTC(C/T)TCTTT intron-variant
rs1217376 -- 113,804,127(-) ttttt(G/T)ttttt intron-variant
rs1217377 -- 113,803,128(-) aagtg(A/G)aagaa intron-variant
rs1217378 -- 113,802,796(-) gctgg(A/G)ggtga intron-variant

Structural Variations from Database of Genomic Variants (DGV) for RSBN1 Gene

Variant ID Type Subtype PubMed ID
esv23869 CNV Loss 19812545
nsv831093 CNV Loss 17160897
nsv820192 CNV Loss 19587683
esv2461577 CNV Deletion 19546169

Relevant External Links for RSBN1 Gene

HapMap Linkage Disequilibrium report
RSBN1

Disorders for RSBN1 Gene

Relevant External Links for RSBN1

Genetic Association Database (GAD)
RSBN1
Human Genome Epidemiology (HuGE) Navigator
RSBN1
genes like me logo Genes that share disorders with RSBN1: view

No data available for UniProtKB/Swiss-Prot for RSBN1 Gene

Publications for RSBN1 Gene

  1. PTPN22 Trp620 explains the association of chromosome 1p13 with type 1 diabetes and shows a statistical interaction with HLA class II genotypes. (PMID: 18305142) Smyth D.J. … Todd J.A. (Diabetes 2008) 3 23 49
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. Variants in TNFAIP3, STAT4, and C12orf30 loci associated with multiple autoimmune diseases are also associated with juvenile idiopathic arthritis. (PMID: 19565500) Prahalad S. … Jorde L.B. (Arthritis Rheum. 2009) 3 49
  5. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 49

Products for RSBN1 Gene

Sources for RSBN1 Gene

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