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Aliases for CALML5 Gene

Aliases for CALML5 Gene

  • Calmodulin Like 5 2 3 5
  • Calmodulin-Like Skin Protein 2 3 4
  • CLSP 3 4
  • Calmodulin-Like Protein 5 3
  • Calmodulin-Like 5 2

External Ids for CALML5 Gene

Previous GeneCards Identifiers for CALML5 Gene

  • GC10M005494
  • GC10M005530

Summaries for CALML5 Gene

Entrez Gene Summary for CALML5 Gene

  • This gene encodes a novel calcium binding protein expressed in the epidermis and related to the calmodulin family of calcium binding proteins. Functional studies with recombinant protein demonstrate it does bind calcium and undergoes a conformational change when it does so. Abundant expression is detected only in reconstructed epidermis and is restricted to differentiating keratinocytes. In addition, it can associate with transglutaminase 3, shown to be a key enzyme in the terminal differentiation of keratinocytes. [provided by RefSeq, Jul 2008]

GeneCards Summary for CALML5 Gene

CALML5 (Calmodulin Like 5) is a Protein Coding gene. Among its related pathways are Calcium signaling pathway and Long-term potentiation. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is CALM1.

UniProtKB/Swiss-Prot for CALML5 Gene

  • Binds calcium. May be involved in terminal differentiation of keratinocytes.

Gene Wiki entry for CALML5 Gene

Additional gene information for CALML5 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CALML5 Gene

Genomics for CALML5 Gene

Regulatory Elements for CALML5 Gene

Enhancers for CALML5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H005476 1.3 ENCODE dbSUPER 19 +20.7 20737 5 HDGF PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ELK1 ATF7 CAVIN1 CALML5 CALML3-AS1 ENSG00000256462 CALML3 ASB13 TUBAL3 NET1
GH10H005543 2 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -50.2 -50160 11 FEZF1 DMAP1 ZNF143 SP3 MCM3 MEF2D SSRP1 ZNF610 GLIS1 RCOR2 FAM208B FBXO18 LOC105376384 CALML3-AS1 ENSG00000226647 CALML3 NRBF2P5 ENSG00000256462 GDI2 CALML5
GH10H005582 1.7 VISTA Ensembl ENCODE dbSUPER 11.6 -87.5 -87504 9 PKNOX1 FOXA2 ZFP64 ZBTB7B FOS RUNX3 JUNB REST ZNF592 SREBF1 FBXO18 FAM208B LOC105376384 ENSG00000226647 CALML5 CALML3 CALML3-AS1 ENSG00000256462 LOC105376382 NET1
GH10H005444 1.6 Ensembl ENCODE dbSUPER 11.4 +51.6 51637 7 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 TUBAL3 GDI2 LOC105376384 CALML5 CALML3 CALML3-AS1 ENSG00000256462 ASB13 NRBF2P5 UCN3
GH10H005534 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.2 -35.6 -35623 1 ELF3 SOX13 CEBPG ZNF384 SOX5 ZNF362 SP5 FOXA3 HLF CEBPB CALML5 CALML3 NET1 CALML3-AS1 LOC105376380
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CALML5 on UCSC Golden Path with GeneCards custom track

Genomic Location for CALML5 Gene

Chromosome:
10
Start:
5,498,695 bp from pter
End:
5,499,570 bp from pter
Size:
876 bases
Orientation:
Minus strand

Genomic View for CALML5 Gene

Genes around CALML5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CALML5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CALML5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CALML5 Gene

Proteins for CALML5 Gene

  • Protein details for CALML5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NZT1-CALL5_HUMAN
    Recommended name:
    Calmodulin-like protein 5
    Protein Accession:
    Q9NZT1
    Secondary Accessions:
    • Q5SQI3
    • Q8IXU8

    Protein attributes for CALML5 Gene

    Size:
    146 amino acids
    Molecular mass:
    15893 Da
    Quaternary structure:
    • Associates with transglutaminase 3.

    Three dimensional structures from OCA and Proteopedia for CALML5 Gene

neXtProt entry for CALML5 Gene

Post-translational modifications for CALML5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CALML5 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • Abcam antibodies for CALML5

No data available for DME Specific Peptides for CALML5 Gene

Domains & Families for CALML5 Gene

Gene Families for CALML5 Gene

HGNC:
Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins

Protein Domains for CALML5 Gene

Suggested Antigen Peptide Sequences for CALML5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with CALML5: view

No data available for UniProtKB/Swiss-Prot for CALML5 Gene

Function for CALML5 Gene

Molecular function for CALML5 Gene

UniProtKB/Swiss-Prot Function:
Binds calcium. May be involved in terminal differentiation of keratinocytes.

Phenotypes From GWAS Catalog for CALML5 Gene

Gene Ontology (GO) - Molecular Function for CALML5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with CALML5: view
genes like me logo Genes that share phenotypes with CALML5: view

Animal Model Products

CRISPR Products

miRNA for CALML5 Gene

miRTarBase miRNAs that target CALML5

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CALML5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for CALML5 Gene

Localization for CALML5 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CALML5 gene
Compartment Confidence
extracellular 5
cytosol 4
nucleus 3
plasma membrane 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Plasma membrane (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for CALML5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0070062 extracellular exosome IDA 23376485
GO:1904813 ficolin-1-rich granule lumen TAS --
genes like me logo Genes that share ontologies with CALML5: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for CALML5 Gene

Pathways & Interactions for CALML5 Gene

genes like me logo Genes that share pathways with CALML5: view

Gene Ontology (GO) - Biological Process for CALML5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction TAS 10777582
GO:0008544 epidermis development TAS 10777582
GO:0043312 neutrophil degranulation TAS --
genes like me logo Genes that share ontologies with CALML5: view

No data available for SIGNOR curated interactions for CALML5 Gene

Drugs & Compounds for CALML5 Gene

(1) Drugs for CALML5 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
calcium Nutra 0
genes like me logo Genes that share compounds with CALML5: view

Transcripts for CALML5 Gene

mRNA/cDNA for CALML5 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(16) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for CALML5 Gene

Calmodulin-like 5:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for CALML5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for CALML5 Gene

No ASD Table

Relevant External Links for CALML5 Gene

GeneLoc Exon Structure for
CALML5
ECgene alternative splicing isoforms for
CALML5

Expression for CALML5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CALML5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CALML5 Gene

This gene is overexpressed in Skin - Sun Exposed (Lower leg) (x26.1) and Skin - Not Sun Exposed (Suprapubic) (x20.8).

Protein differential expression in normal tissues from HIPED for CALML5 Gene

This gene is overexpressed in Salivary gland (15.9), Skin (11.7), Cervix (11.1), and Urinary Bladder (9.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CALML5 Gene



NURSA nuclear receptor signaling pathways regulating expression of CALML5 Gene:

CALML5

SOURCE GeneReport for Unigene cluster for CALML5 Gene:

Hs.180142

mRNA Expression by UniProt/SwissProt for CALML5 Gene:

Q9NZT1-CALL5_HUMAN
Tissue specificity: Particularly abundant in the epidermis where its expression is directly related to keratinocyte differentiation. Very low expression in lung.

Evidence on tissue expression from TISSUES for CALML5 Gene

  • Skin(4.6)
  • Liver(4)
genes like me logo Genes that share expression patterns with CALML5: view

Primer Products

No data available for Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for CALML5 Gene

Orthologs for CALML5 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for CALML5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CALML5 33 34
  • 98.17 (n)
dog
(Canis familiaris)
Mammalia CALML5 33 34
  • 76.48 (n)
cow
(Bos Taurus)
Mammalia CALML5 33 34
  • 72.41 (n)
rat
(Rattus norvegicus)
Mammalia Calml5 33
  • 64.84 (n)
mouse
(Mus musculus)
Mammalia Calm4 33 16
  • 63.85 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 34
  • 46 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia CALML5 34
  • 44 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii tnnc1b 34
  • 29 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG31960 34
  • 39 (a)
ManyToMany
CG11165 34
  • 35 (a)
ManyToMany
CG31958 34
  • 31 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea cal-1 34
  • 36 (a)
ManyToMany
cal-2 34
  • 36 (a)
ManyToMany
cal-4 34
  • 25 (a)
ManyToMany
cal-3 34
  • 24 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes CMD1 34
  • 37 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.7047 34
  • 34 (a)
ManyToMany
Species where no ortholog for CALML5 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for CALML5 Gene

ENSEMBL:
Gene Tree for CALML5 (if available)
TreeFam:
Gene Tree for CALML5 (if available)

Paralogs for CALML5 Gene

Paralogs for CALML5 Gene

(24) SIMAP similar genes for CALML5 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CALML5: view

Variants for CALML5 Gene

Sequence variations from dbSNP and Humsavar for CALML5 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000383189 -- 5,498,229(+) ACACA(C/T)ACACA downstream-variant-500B
rs1002547499 -- 5,501,370(+) CAGAG(A/G)CCTCA upstream-variant-2KB
rs1003393037 -- 5,500,504(+) AACTT(G/T)GCCCT upstream-variant-2KB
rs1005882780 -- 5,501,322(+) TAAAG(A/G)TAGCT upstream-variant-2KB
rs1007454349 -- 5,500,423(+) ACACG(C/G)GGGAC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CALML5 Gene

Variant ID Type Subtype PubMed ID
nsv1051283 CNV gain 25217958
nsv549886 CNV loss 21841781
nsv831774 CNV gain 17160897

Variation tolerance for CALML5 Gene

Residual Variation Intolerance Score: 82.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.32; 41.40% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CALML5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CALML5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CALML5 Gene

Disorders for CALML5 Gene

Relevant External Links for CALML5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CALML5

No disorders were found for CALML5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CALML5 Gene

Publications for CALML5 Gene

  1. Identification and cloning of a new calmodulin-like protein from human epidermis. (PMID: 10777582) Méhul B … Schmidt R (The Journal of biological chemistry 2000) 2 3 4 22 60
  2. A structural and dynamic characterization of the EF-hand protein CLSP. (PMID: 16765896) Babini E … Luchinat C (Structure (London, England : 1993) 2006) 3 4 22 60
  3. Influence of calcium on the proteolytic degradation of the calmodulin-like skin protein (calmodulin-like protein 5) in psoriatic epidermis. (PMID: 16689864) Méhul B … Schmidt R (Experimental dermatology 2006) 3 22 60
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 60

Products for CALML5 Gene

Sources for CALML5 Gene

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