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Aliases for UIMC1 Gene

Aliases for UIMC1 Gene

  • Ubiquitin Interaction Motif Containing 1 2 3 5
  • Retinoid X Receptor-Interacting Protein 110 3 4
  • Receptor-Associated Protein 80 3 4
  • RAP80 3 4
  • Ubiquitin Interaction Motif-Containing Protein 1 4
  • Receptor Associated Protein 80 2
  • BRCA1-A Complex Subunit RAP80 3
  • X2HRIP110 3
  • RXRIP110 4

External Ids for UIMC1 Gene

Previous GeneCards Identifiers for UIMC1 Gene

  • GC05M176265
  • GC05M171254

Summaries for UIMC1 Gene

Entrez Gene Summary for UIMC1 Gene

  • This gene encodes a nuclear protein that interacts with Brca1 (breast cancer 1) in a complex to recognize and repair DNA lesions. This protein binds ubiquitinated lysine 63 of histone H2A and H2AX. This protein may also function as a repressor of transcription. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2015]

GeneCards Summary for UIMC1 Gene

UIMC1 (Ubiquitin Interaction Motif Containing 1) is a Protein Coding gene. Among its related pathways are DNA Damage and DNA Double Strand Break Response. GO annotations related to this gene include histone binding and K63-linked polyubiquitin binding.

UniProtKB/Swiss-Prot for UIMC1 Gene

  • Ubiquitin-binding protein (PubMed:24627472). Specifically recognizes and binds Lys-63-linked ubiquitin (PubMed:19328070, Ref.37). Plays a central role in the BRCA1-A complex by specifically binding Lys-63-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes Lys-63-linked ubiquitin on histones H2A and H2AX. Also weakly binds monoubiquitin but with much less affinity than Lys-63-linked ubiquitin. May interact with monoubiquitinated histones H2A and H2B; the relevance of such results is however unclear in vivo. Does not bind Lys-48-linked ubiquitin. May indirectly act as a transcriptional repressor by inhibiting the interaction of NR6A1 with the corepressor NCOR1.

Gene Wiki entry for UIMC1 Gene

Additional gene information for UIMC1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for UIMC1 Gene

Genomics for UIMC1 Gene

Regulatory Elements for UIMC1 Gene

Enhancers for UIMC1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H177453 1.7 Ensembl ENCODE dbSUPER 27.9 -434.2 -434232 6.9 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF346 NSD1 ZNF346-IT1 LOC202181 UIMC1 ENSG00000247679 SLC34A1 F12 GRK6 PFN3
GH05H177425 1.8 FANTOM5 ENCODE dbSUPER 26.3 -406.7 -406739 8.6 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 CBX5 NSD1 GRK6 FAF2 UIMC1 DOK3 ENSG00000247679 LOC202181 ZNF346-IT1 PFN3 FAM193B
GH05H176386 1.4 ENCODE dbSUPER 33.8 +634.2 634211 4.1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A PPARGC1A MEF2D FAF2 ENSG00000251414 NSD1 ENSG00000250909 RPL21P60 UIMC1 MXD3 HIGD2A ZNF346 ZNF346-IT1
GH05H177350 1.4 ENCODE dbSUPER 25.3 -328.7 -328708 2.5 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF143 FOS NSD1 ENSG00000247679 FAF2 UIMC1 RGS14 FAM193B PDLIM7 ZNF346 ENSG00000251414 RMND5B
GH05H177443 1.6 Ensembl ENCODE dbSUPER 19.5 -423.7 -423731 6.1 HNRNPUL1 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF207 FOS NSD1 FAF2 UIMC1 ENSG00000248484 ZNF346 LOC105377752 OR1X5P LOC105377753 GMCL1P1 ENSG00000247679
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around UIMC1 on UCSC Golden Path with GeneCards custom track

Promoters for UIMC1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000191290 -67 1401 HDGF ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF416

Genomic Locations for UIMC1 Gene

Genomic Locations for UIMC1 Gene
chr5:176,905,005-177,022,633
(GRCh38/hg38)
Size:
117,629 bases
Orientation:
Minus strand
chr5:176,332,006-176,449,634
(GRCh37/hg19)

Genomic View for UIMC1 Gene

Genes around UIMC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
UIMC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for UIMC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for UIMC1 Gene

Proteins for UIMC1 Gene

  • Protein details for UIMC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96RL1-UIMC1_HUMAN
    Recommended name:
    BRCA1-A complex subunit RAP80
    Protein Accession:
    Q96RL1
    Secondary Accessions:
    • A8MSA1
    • B3KMZ1
    • B4E3N2
    • Q5XKQ1
    • Q7Z3W7
    • Q8N5B9
    • Q9BZR1
    • Q9BZR5
    • Q9UHX7

    Protein attributes for UIMC1 Gene

    Size:
    719 amino acids
    Molecular mass:
    79727 Da
    Quaternary structure:
    • Interacts with TSP57 (By similarity). Component of the ARISC complex, at least composed of UIMC1/RAP80, ABRAXAS1, BRCC3/BRCC36, BABAM2 and BABAM1/NBA1 (PubMed:24075985). Component of the BRCA1-A complex, at least composed of the BRCA1, BARD1, UIMC1/RAP80, ABRAXAS1, BRCC3/BRCC36, BABAM2 and BABAM1/NBA1. In the BRCA1-A complex, interacts directly with ABRAXAS1. Interacts with ESR1, NR6A1 and UBE2I.
    SequenceCaution:
    • Sequence=AAH06078.1; Type=Erroneous termination; Positions=386; Note=Translated as Glu.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for UIMC1 Gene

    Alternative splice isoforms for UIMC1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for UIMC1 Gene

Post-translational modifications for UIMC1 Gene

  • Phosphorylated upon DNA damage by ATM or ATR.
  • Sumoylated.
  • Ubiquitination at posLast=2020, posLast=3131, Lys75, Lys90, posLast=146146, Lys232, posLast=245245, Lys374, posLast=382382, Lys544, posLast=567567, Lys587, posLast=607607, and Lys635
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for UIMC1 Gene

Domains & Families for UIMC1 Gene

Gene Families for UIMC1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for UIMC1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for UIMC1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96RL1

UniProtKB/Swiss-Prot:

UIMC1_HUMAN :
  • The tandem UIM domains form a continuous 60 Angstrom-long alpha-helix and mediate binding to Lys-63-linked ubiquitins. UIM1 and UIM2 bind to the proximal and distal ubiquitin moieties and recognize an Ile-44-centered hydrophobic patch. Since UIMs dont interact with the Lys-63 isopeptide bond the UIM-linker region between the 2 UIM domains determines the selectivity for Lys-63-linkage, and its length is very important for specificity.
  • Belongs to the RAP80 family.
Domain:
  • The tandem UIM domains form a continuous 60 Angstrom-long alpha-helix and mediate binding to Lys-63-linked ubiquitins. UIM1 and UIM2 bind to the proximal and distal ubiquitin moieties and recognize an Ile-44-centered hydrophobic patch. Since UIMs dont interact with the Lys-63 isopeptide bond the UIM-linker region between the 2 UIM domains determines the selectivity for Lys-63-linkage, and its length is very important for specificity.
  • The Abraxas-interacting region (AIR) mediates the interaction with ABRAXAS1.
Family:
  • Belongs to the RAP80 family.
genes like me logo Genes that share domains with UIMC1: view

Function for UIMC1 Gene

Molecular function for UIMC1 Gene

UniProtKB/Swiss-Prot Function:
Ubiquitin-binding protein (PubMed:24627472). Specifically recognizes and binds Lys-63-linked ubiquitin (PubMed:19328070, Ref.37). Plays a central role in the BRCA1-A complex by specifically binding Lys-63-linked ubiquitinated histones H2A and H2AX at DNA lesions sites, leading to target the BRCA1-BARD1 heterodimer to sites of DNA damage at double-strand breaks (DSBs). The BRCA1-A complex also possesses deubiquitinase activity that specifically removes Lys-63-linked ubiquitin on histones H2A and H2AX. Also weakly binds monoubiquitin but with much less affinity than Lys-63-linked ubiquitin. May interact with monoubiquitinated histones H2A and H2B; the relevance of such results is however unclear in vivo. Does not bind Lys-48-linked ubiquitin. May indirectly act as a transcriptional repressor by inhibiting the interaction of NR6A1 with the corepressor NCOR1.

Phenotypes From GWAS Catalog for UIMC1 Gene

Gene Ontology (GO) - Molecular Function for UIMC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 12080054
GO:0042393 histone binding IDA 17525341
GO:0070530 K63-linked polyubiquitin binding IDA 17525341
genes like me logo Genes that share ontologies with UIMC1: view
genes like me logo Genes that share phenotypes with UIMC1: view

Animal Models for UIMC1 Gene

MGI Knock Outs for UIMC1:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for UIMC1

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for UIMC1 Gene

Localization for UIMC1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for UIMC1 Gene

Nucleus. Note=Localizes at sites of DNA damage at double-strand breaks (DSBs).

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for UIMC1 gene
Compartment Confidence
nucleus 5

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nuclear bodies (4)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for UIMC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA,IDA 12080054
GO:0005654 nucleoplasm TAS --
GO:0016604 nuclear body IDA --
GO:0070531 BRCA1-A complex IDA 17525340
genes like me logo Genes that share ontologies with UIMC1: view

Pathways & Interactions for UIMC1 Gene

genes like me logo Genes that share pathways with UIMC1: view

Pathways by source for UIMC1 Gene

1 Cell Signaling Technology pathway for UIMC1 Gene
1 KEGG pathway for UIMC1 Gene

SIGNOR curated interactions for UIMC1 Gene

Activates:

Gene Ontology (GO) - Biological Process for UIMC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006281 DNA repair IEA --
GO:0006302 double-strand break repair IMP 17525340
GO:0006303 double-strand break repair via nonhomologous end joining TAS --
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with UIMC1: view

Drugs & Compounds for UIMC1 Gene

No Compound Related Data Available

Transcripts for UIMC1 Gene

Unigene Clusters for UIMC1 Gene

Ubiquitin interaction motif containing 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for UIMC1

Alternative Splicing Database (ASD) splice patterns (SP) for UIMC1 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16a · 16b · 16c ^ 17
SP1: - - - -
SP2: - - - -
SP3: - - - - -
SP4:
SP5: -
SP6: -

Relevant External Links for UIMC1 Gene

GeneLoc Exon Structure for
UIMC1
ECgene alternative splicing isoforms for
UIMC1

Expression for UIMC1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for UIMC1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for UIMC1 Gene

This gene is overexpressed in Whole Blood (x4.1).

Protein differential expression in normal tissues from HIPED for UIMC1 Gene

This gene is overexpressed in Testis (15.1), Tlymphocyte (11.5), Peripheral blood mononuclear cells (9.6), and Adrenal (6.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for UIMC1 Gene



Protein tissue co-expression partners for UIMC1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of UIMC1 Gene:

UIMC1

SOURCE GeneReport for Unigene cluster for UIMC1 Gene:

Hs.232721

mRNA Expression by UniProt/SwissProt for UIMC1 Gene:

Q96RL1-UIMC1_HUMAN
Tissue specificity: Expressed in testis, ovary, thymus and heart. Expressed in germ cells of the testis.

Evidence on tissue expression from TISSUES for UIMC1 Gene

  • Nervous system(4.3)
  • Skin(4.2)
genes like me logo Genes that share expression patterns with UIMC1: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for UIMC1 Gene

Orthologs for UIMC1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for UIMC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia UIMC1 33 34
  • 99.12 (n)
dog
(Canis familiaris)
Mammalia UIMC1 33 34
  • 92.04 (n)
cow
(Bos Taurus)
Mammalia UIMC1 33 34
  • 91.03 (n)
mouse
(Mus musculus)
Mammalia Uimc1 33 16 34
  • 85.71 (n)
rat
(Rattus norvegicus)
Mammalia Uimc1 33
  • 83.5 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 34
  • 57 (a)
OneToMany
-- 34
  • 55 (a)
OneToMany
-- 34
  • 44 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia UIMC1 34
  • 54 (a)
OneToOne
chicken
(Gallus gallus)
Aves UIMC1 33 34
  • 59.16 (n)
lizard
(Anolis carolinensis)
Reptilia UIMC1 34
  • 40 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii UIMC1 (2 of 2) 34
  • 18 (a)
OneToMany
UIMC1 (1 of 2) 34
  • 12 (a)
OneToMany
Species where no ortholog for UIMC1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for UIMC1 Gene

ENSEMBL:
Gene Tree for UIMC1 (if available)
TreeFam:
Gene Tree for UIMC1 (if available)

Paralogs for UIMC1 Gene

(1) SIMAP similar genes for UIMC1 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with UIMC1: view

No data available for Paralogs for UIMC1 Gene

Variants for UIMC1 Gene

Sequence variations from dbSNP and Humsavar for UIMC1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000005031 -- 176,978,043(+) AAATA(C/G)CAAGA intron-variant
rs1000064219 -- 176,930,603(+) AATGT(C/T)AAGCA intron-variant
rs1000081679 -- 176,950,955(+) GGTTA(A/C)TGCCA intron-variant
rs1000091660 -- 176,979,802(+) TACTA(C/T)AATGG intron-variant
rs1000094703 -- 176,911,490(+) AACCT(C/T)ATCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for UIMC1 Gene

Variant ID Type Subtype PubMed ID
nsv5145 CNV deletion 18451855
nsv436485 CNV deletion 17901297
nsv1153480 CNV deletion 26484159
nsv1131928 CNV deletion 24896259
nsv1110777 CNV deletion 24896259
nsv1072584 CNV deletion 25765185
nsv1029191 CNV gain 25217958
nsv1024971 CNV loss 25217958
nsv1016283 CNV gain 25217958
esv994326 CNV deletion 20482838
esv8970 CNV loss 19470904
esv3627 CNV loss 18987735
esv3607679 CNV loss 21293372
esv3607678 CNV loss 21293372
esv3567060 CNV deletion 23714750
esv2731185 CNV deletion 23290073
esv2656890 CNV deletion 23128226
esv2624268 CNV deletion 19546169
esv2102565 CNV deletion 18987734
esv1688212 CNV insertion 17803354
esv1009754 CNV deletion 20482838
dgv363n21 CNV gain 19592680
dgv3228n106 CNV deletion 24896259

Variation tolerance for UIMC1 Gene

Residual Variation Intolerance Score: 50.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.86; 79.37% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for UIMC1 Gene

Human Gene Mutation Database (HGMD)
UIMC1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
UIMC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for UIMC1 Gene

Disorders for UIMC1 Gene

Relevant External Links for UIMC1

Genetic Association Database (GAD)
UIMC1
Human Genome Epidemiology (HuGE) Navigator
UIMC1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
UIMC1

No disorders were found for UIMC1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for UIMC1 Gene

Publications for UIMC1 Gene

  1. RAP80, a novel nuclear protein that interacts with the retinoid-related testis-associated receptor. (PMID: 12080054) Yan Z … Jetten AM (The Journal of biological chemistry 2002) 2 3 4 22 60
  2. Analysis of the genes coding for the BRCA1-interacting proteins, RAP80 and Abraxas (CCDC98), in high-risk, non-BRCA1/2, multiethnic breast cancer cases. (PMID: 18695986) Novak DJ … Tischkowitz M (Breast cancer research and treatment 2009) 3 4 45 60
  3. RAP80 responds to DNA damage induced by both ionizing radiation and UV irradiation and is phosphorylated at Ser 205. (PMID: 18519686) Yan J … Jetten AM (Cancer research 2008) 3 4 22 60
  4. The ubiquitin-interacting motif containing protein RAP80 interacts with BRCA1 and functions in DNA damage repair response. (PMID: 17621610) Yan J … Jetten AM (Cancer research 2007) 3 4 22 60
  5. Molecular basis for impaired DNA damage response function associated with the RAP80 ΔE81 defect. (PMID: 24627472) Anamika … Spyracopoulos L (The Journal of biological chemistry 2014) 3 4 60

Products for UIMC1 Gene

Sources for UIMC1 Gene

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