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Aliases for PBDC1 Gene

Aliases for PBDC1 Gene

  • Polysaccharide Biosynthesis Domain Containing 1 2 3 5
  • Polysaccharide Biosynthesis Domain-Containing Protein 1 3 4
  • CXorf26 3 4
  • Chromosome X Open Reading Frame 26 2
  • UPF0368 Protein Cxorf26 3
  • 2610029G23Rik 3

External Ids for PBDC1 Gene

Previous HGNC Symbols for PBDC1 Gene

  • CXorf26

Previous GeneCards Identifiers for PBDC1 Gene

  • GC0XP075398
  • GC0XP075403
  • GC0XP075409

Summaries for PBDC1 Gene

GeneCards Summary for PBDC1 Gene

PBDC1 (Polysaccharide Biosynthesis Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for PBDC1 Gene

Genomics for PBDC1 Gene

Regulatory Elements for PBDC1 Gene

Promoters for PBDC1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around PBDC1 on UCSC Golden Path with GeneCards custom track

Genomic Location for PBDC1 Gene

Chromosome:
X
Start:
76,172,929 bp from pter
End:
76,178,310 bp from pter
Size:
5,382 bases
Orientation:
Plus strand

Genomic View for PBDC1 Gene

Genes around PBDC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
PBDC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for PBDC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for PBDC1 Gene

Proteins for PBDC1 Gene

  • Protein details for PBDC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BVG4-PBDC1_HUMAN
    Recommended name:
    Protein PBDC1
    Protein Accession:
    Q9BVG4

    Protein attributes for PBDC1 Gene

    Size:
    233 amino acids
    Molecular mass:
    26057 Da
    Quaternary structure:
    No Data Available

neXtProt entry for PBDC1 Gene

Proteomics data for PBDC1 Gene at MOPED

Post-translational modifications for PBDC1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for PBDC1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for PBDC1 Gene

Domains & Families for PBDC1 Gene

Protein Domains for PBDC1 Gene

Suggested Antigen Peptide Sequences for PBDC1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BVG4

UniProtKB/Swiss-Prot:

PBDC1_HUMAN :
  • Belongs to the PBDC1 family.
Family:
  • Belongs to the PBDC1 family.
genes like me logo Genes that share domains with PBDC1: view

No data available for Gene Families for PBDC1 Gene

Function for PBDC1 Gene

Phenotypes for PBDC1 Gene

GenomeRNAi human phenotypes for PBDC1:
genes like me logo Genes that share phenotypes with PBDC1: view

Animal Model Products

miRNA for PBDC1 Gene

miRTarBase miRNAs that target PBDC1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for PBDC1 Gene

Localization for PBDC1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for PBDC1 Gene

Pathways & Interactions for PBDC1 Gene

SuperPathways for PBDC1 Gene

No Data Available

Interacting Proteins for PBDC1 Gene

Gene Ontology (GO) - Biological Process for PBDC1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for PBDC1 Gene

Drugs & Compounds for PBDC1 Gene

No Compound Related Data Available

Transcripts for PBDC1 Gene

mRNA/cDNA for PBDC1 Gene

Unigene Clusters for PBDC1 Gene

Polysaccharide biosynthesis domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for PBDC1 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b ^ 3 ^ 4 ^ 5a · 5b ^ 6
SP1: - -
SP2: - - - -
SP3: -
SP4: -

Relevant External Links for PBDC1 Gene

GeneLoc Exon Structure for
PBDC1
ECgene alternative splicing isoforms for
PBDC1

Expression for PBDC1 Gene

mRNA expression in normal human tissues for PBDC1 Gene

Protein differential expression in normal tissues from HIPED for PBDC1 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for PBDC1 Gene



SOURCE GeneReport for Unigene cluster for PBDC1 Gene Hs.370100

genes like me logo Genes that share expression patterns with PBDC1: view

Protein tissue co-expression partners for PBDC1 Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for PBDC1 Gene

Orthologs for PBDC1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for PBDC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CXORF26 36
  • 100 (a)
OneToOne
LOC473674 35
  • 99.51 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia PBDC1 36
  • 81 (a)
OneToOne
PBDC1 35
  • 87.43 (n)
  • 85.34 (a)
dog
(Canis familiaris)
Mammalia PBDC1 35
  • 89.12 (n)
  • 87.89 (a)
-- 36
  • 81 (a)
OneToMany
-- 36
  • 84 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Pbdc1 35
  • 85.3 (n)
  • 85.13 (a)
Pbdc1 36
  • 81 (a)
OneToOne
Pbdc1 16
oppossum
(Monodelphis domestica)
Mammalia PBDC1 36
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia PBDC1 36
  • 73 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Pbdc1 35
  • 87.18 (n)
  • 88.21 (a)
chicken
(Gallus gallus)
Aves PBDC1 36
  • 76 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.22768 35
tropical clawed frog
(Silurana tropicalis)
Amphibia pbdc1 35
  • 66.44 (n)
  • 70.27 (a)
Str.10635 35
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9565 35
zebrafish
(Danio rerio)
Actinopterygii pbdc1 35
  • 68.52 (n)
  • 70.83 (a)
pbdc1 36
  • 60 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007575 35
  • 52 (n)
  • 47.33 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG7519 36
  • 48 (a)
OneToOne
CG7519 35
  • 54.25 (n)
  • 51.72 (a)
worm
(Caenorhabditis elegans)
Secernentea Y54E5A.5 36
  • 40 (a)
OneToOne
Y54E5A.5 35
  • 51.54 (n)
  • 45.38 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFL129W 35
  • 50.13 (n)
  • 45.86 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes -- 36
  • 42 (a)
OneToOne
-- 38
YPL225W 35
  • 51.23 (n)
  • 44.85 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C16159g 35
  • 51.38 (n)
  • 46.62 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU09442 35
  • 49.75 (n)
  • 40.3 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPBC3E7.07c 35
  • 50.12 (n)
  • 40 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.1022 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 48 (a)
OneToOne
Species with no ortholog for PBDC1:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for PBDC1 Gene

ENSEMBL:
Gene Tree for PBDC1 (if available)
TreeFam:
Gene Tree for PBDC1 (if available)

Paralogs for PBDC1 Gene

No data available for Paralogs for PBDC1 Gene

Variants for PBDC1 Gene

Sequence variations from dbSNP and Humsavar for PBDC1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs15020 -- 76,178,121(-) GGAAA(A/T)ATCAA utr-variant-3-prime
rs1024502 -- 76,172,309(-) AATTT(C/G)AGGAA upstream-variant-2KB
rs5938405 -- 76,171,926(+) ACAGT(A/T)CTTTA upstream-variant-2KB
rs5981410 -- 76,171,472(+) ttaac(A/T)ctacc upstream-variant-2KB
rs5981411 -- 76,174,255(+) ATTGG(C/T)ACGTG intron-variant

Variation tolerance for PBDC1 Gene

Residual Variation Intolerance Score: 54% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.25; 5.59% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for PBDC1 Gene

HapMap Linkage Disequilibrium report
PBDC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for PBDC1 Gene

Disorders for PBDC1 Gene

Relevant External Links for PBDC1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
PBDC1

No disorders were found for PBDC1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for PBDC1 Gene

Publications for PBDC1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Cloning and functional analysis of cDNAs with open reading frames for 300 previously undefined genes expressed in CD34+ hematopoietic stem/progenitor cells. (PMID: 11042152) Zhang Q.-H. … Chen Z. (Genome Res. 2000) 2 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3
  5. A high-throughput approach for measuring temporal changes in the interactome. (PMID: 22863883) Kristensen A.R. … Foster L.J. (Nat. Methods 2012) 3

Products for PBDC1 Gene

Sources for PBDC1 Gene

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