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Aliases for TFB1M Gene

Aliases for TFB1M Gene

  • Transcription Factor B1, Mitochondrial 2 3
  • S-Adenosylmethionine-6-N, N-Adenosyl(RRNA) Dimethyltransferase 1 3 4
  • Mitochondrial 12S RRNA Dimethylase 1 3 4
  • H-MtTFB1 3 4
  • HTFB1M 3 4
  • MtTFB1 3 4
  • CGI75 3 6
  • Homolog Of Yeast Mitochondrial Transcription Factor B 3
  • Dimethyladenosine Transferase 1, Mitochondrial 3
  • Mitochondrial Dimethyladenosine Transferase 1 3
  • Mitochondrial Transcription Factor B1 4
  • Dimethyladenosine Transferase 1 2
  • Mitochondrial 2
  • EC 2.1.1.- 4
  • EC 2.1.1 63
  • H-MtTFB 4
  • CGI-75 3
  • MtTFB 3

External Ids for TFB1M Gene

Previous GeneCards Identifiers for TFB1M Gene

  • GC06M155054
  • GC06M155474
  • GC06M155609
  • GC06M155670
  • GC06M153141
  • GC06M155578

Summaries for TFB1M Gene

Entrez Gene Summary for TFB1M Gene

  • The protein encoded by this gene is a dimethyltransferase that methylates the conserved stem loop of mitochondrial 12S rRNA. The encoded protein also is part of the basal mitochondrial transcription complex and is necessary for mitochondrial gene expression. The methylation and transcriptional activities of this protein are independent of one another. Variations in this gene may influence the severity of aminoglycoside-induced deafness (AID).[provided by RefSeq, Aug 2010]

GeneCards Summary for TFB1M Gene

TFB1M (Transcription Factor B1, Mitochondrial) is a Protein Coding gene. Diseases associated with TFB1M include mitochondrial non-syndromic sensorineural deafness. Among its related pathways are Energy Metabolism and Mitochondrial Gene Expression. GO annotations related to this gene include rRNA (adenine-N6,N6-)-dimethyltransferase activity. An important paralog of this gene is DIMT1.

UniProtKB/Swiss-Prot for TFB1M Gene

  • S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. Also required for basal transcription of mitochondrial DNA, probably via its interaction with POLRMT and TFAM. Stimulates transcription independently of the methyltransferase activity.

Gene Wiki entry for TFB1M Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TFB1M Gene

Genomics for TFB1M Gene

Regulatory Elements for TFB1M Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TFB1M Gene

Start:
155,253,361 bp from pter
End:
155,314,497 bp from pter
Size:
61,137 bases
Orientation:
Minus strand

Genomic View for TFB1M Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TFB1M Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TFB1M Gene

Proteins for TFB1M Gene

  • Protein details for TFB1M Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8WVM0-TFB1M_HUMAN
    Recommended name:
    Dimethyladenosine transferase 1, mitochondrial
    Protein Accession:
    Q8WVM0
    Secondary Accessions:
    • Q05DR0
    • Q9Y384

    Protein attributes for TFB1M Gene

    Size:
    346 amino acids
    Molecular mass:
    39543 Da
    Quaternary structure:
    • Interacts with mitochondrial RNA polymerase POLRMT. Interacts with TFAM.
    SequenceCaution:
    • Sequence=AAH05183.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A sequence.; Evidence={ECO:0000305};

neXtProt entry for TFB1M Gene

Proteomics data for TFB1M Gene at MOPED

Selected DME Specific Peptides for TFB1M Gene

Post-translational modifications for TFB1M Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TFB1M Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

Antibody Products

Domains for TFB1M Gene

Suggested Antigen Peptide Sequences for TFB1M Gene

Graphical View of Domain Structure for InterPro Entry

Q8WVM0

UniProtKB/Swiss-Prot:

TFB1M_HUMAN :
  • Q8WVM0
Family:
  • Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. KsgA subfamily.
genes like me logo Genes that share domains with TFB1M: view

No data available for Gene Families for TFB1M Gene

Function for TFB1M Gene

Molecular function for TFB1M Gene

UniProtKB/Swiss-Prot Function:
S-adenosyl-L-methionine-dependent methyltransferase which specifically dimethylates mitochondrial 12S rRNA at the conserved stem loop. Also required for basal transcription of mitochondrial DNA, probably via its interaction with POLRMT and TFAM. Stimulates transcription independently of the methyltransferase activity.
UniProtKB/Swiss-Prot Induction:
By the nuclear respiratory factors NRF1 and NRF2/GABPB2 and PGC-1 coactivators.

Enzyme Numbers (IUBMB) for TFB1M Gene

Gene Ontology (GO) - Molecular Function for TFB1M Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEA --
GO:0003677 DNA binding IEA --
GO:0005515 protein binding IPI 12897151
GO:0008649 rRNA methyltransferase activity --
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with TFB1M: view
genes like me logo Genes that share phenotypes with TFB1M: view

Animal Models for TFB1M Gene

MGI Knock Outs for TFB1M:

Animal Model Products

CRISPR Products

No data available for miRNA , Transcription Factor Targeting and HOMER Transcription for TFB1M Gene

Localization for TFB1M Gene

Subcellular locations from UniProtKB/Swiss-Prot for TFB1M Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TFB1M Gene COMPARTMENTS Subcellular localization image for TFB1M gene
Compartment Confidence
mitochondrion 5
cytosol 2
golgi apparatus 1
nucleus 1

Gene Ontology (GO) - Cellular Components for TFB1M Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion --
GO:0005759 mitochondrial matrix TAS --
GO:0042645 mitochondrial nucleoid IDA 18063578
genes like me logo Genes that share ontologies with TFB1M: view

Pathways for TFB1M Gene

genes like me logo Genes that share pathways with TFB1M: view

Pathways by source for TFB1M Gene

2 BioSystems pathways for TFB1M Gene

Gene Ontology (GO) - Biological Process for TFB1M Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000154 rRNA modification --
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006996 organelle organization TAS --
GO:0007005 mitochondrion organization TAS --
genes like me logo Genes that share ontologies with TFB1M: view

Compounds for TFB1M Gene

(1) HMDB Compounds for TFB1M Gene

Compound Synonyms Cas Number PubMed IDs
S-Adenosylmethionine
  • (3S)-5'-[(3-amino-3-carboxypropyl)methylsulfonio]-5'-deoxyadenosine
29908-03-0

(2) Novoseek inferred chemical compound relationships for TFB1M Gene

Compound -log(P) Hits PubMed IDs
rrna 58.3 3
adenine 49.8 1
genes like me logo Genes that share compounds with TFB1M: view

Transcripts for TFB1M Gene

Unigene Clusters for TFB1M Gene

Transcription factor B1, mitochondrial:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TFB1M

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TFB1M Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6
SP1: - -
SP2: -
SP3: -

Relevant External Links for TFB1M Gene

GeneLoc Exon Structure for
TFB1M
ECgene alternative splicing isoforms for
TFB1M

Expression for TFB1M Gene

mRNA expression in normal human tissues for TFB1M Gene

Protein differential expression in normal tissues for TFB1M Gene

This gene is overexpressed in Lung (34.9), Breast (15.6), and Adrenal (13.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TFB1M Gene

SOURCE GeneReport for Unigene cluster for TFB1M Gene Hs.279908

mRNA Expression by UniProt/SwissProt for TFB1M Gene

Q8WVM0-TFB1M_HUMAN
Tissue specificity: Ubiquitously expressed.
genes like me logo Genes that share expressions with TFB1M: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Expression partners for TFB1M Gene

Orthologs for TFB1M Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TFB1M Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TFB1M 35
  • 87.39 (n)
  • 85.92 (a)
TFB1M 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TFB1M 35
  • 87.95 (n)
  • 88.92 (a)
TFB1M 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tfb1m 35
  • 85.64 (n)
  • 86.14 (a)
Tfb1m 16
Tfb1m 36
  • 85 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TFB1M 35
  • 99.52 (n)
  • 99.71 (a)
TFB1M 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tfb1m 35
  • 85.64 (n)
  • 86.73 (a)
oppossum
(Monodelphis domestica)
Mammalia TFB1M 36
  • 78 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TFB1M 36
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves TFB1M 35
  • 72.56 (n)
  • 73.62 (a)
TFB1M 36
  • 65 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TFB1M 36
  • 73 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.15471 35
tfb1m 35
  • 70.57 (n)
  • 75.15 (a)
African clawed frog
(Xenopus laevis)
Amphibia MGC68924 35
zebrafish
(Danio rerio)
Actinopterygii tfb1m 35
  • 69.07 (n)
  • 74.62 (a)
tfb1m 36
  • 74 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.2306 35
fruit fly
(Drosophila melanogaster)
Insecta CG7319 37
  • 41 (a)
mtTFB1 35
  • 53.03 (n)
  • 51.3 (a)
mtTFB1 36
  • 48 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP012129 35
  • 53.04 (n)
  • 52.32 (a)
worm
(Caenorhabditis elegans)
Secernentea T03F1.7 37
  • 43 (a)
T03F1.7 35
  • 50 (n)
  • 44.21 (a)
tfbm-1 36
  • 40 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes DIM1 36
  • 22 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 38 (a)
OneToOne
Species with no ortholog for TFB1M:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TFB1M Gene

ENSEMBL:
Gene Tree for TFB1M (if available)
TreeFam:
Gene Tree for TFB1M (if available)

Paralogs for TFB1M Gene

Paralogs for TFB1M Gene

genes like me logo Genes that share paralogs with TFB1M: view

Variants for TFB1M Gene

Sequence variations from dbSNP and Humsavar for TFB1M Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs56237 -- 155,311,628(+) TCCCA(C/T)GCAAA intron-variant
rs162964 -- 155,293,747(+) TTTAT(C/T)TCCAA intron-variant
rs162965 -- 155,294,594(+) AGGAC(A/G)AAAGA intron-variant
rs162966 -- 155,294,851(+) TTTAC(A/G)ACAGT intron-variant
rs162967 -- 155,296,059(+) CATCC(C/G)TCCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TFB1M Gene

Variant ID Type Subtype PubMed ID
nsv886789 CNV Gain 21882294
nsv886790 CNV Loss 21882294
nsv526576 CNV Loss 19592680
esv1338847 CNV Deletion 17803354

Relevant External Links for TFB1M Gene

HapMap Linkage Disequilibrium report
TFB1M
Human Gene Mutation Database (HGMD)
TFB1M

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TFB1M Gene

Disorders for TFB1M Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for TFB1M Gene in MalaCards »

(1) Diseases for TFB1M Gene including...

UniProtKB/Swiss-Prot

TFB1M_HUMAN
  • Note=Variations in TFB1M may influence the clinical expression of aminoglycoside-induced deafness caused by the A1555G mutation in the mitochondrial 12S rRNA.

Relevant External Links for TFB1M

Genetic Association Database (GAD)
TFB1M
Human Genome Epidemiology (HuGE) Navigator
TFB1M
genes like me logo Genes that share disorders with TFB1M: view

No data available for OMIM , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for TFB1M Gene

Publications for TFB1M Gene

  1. A human mitochondrial transcription factor is related to RNA adenine methyltransferases and binds S-adenosylmethionine. (PMID: 11809803) McCulloch V. … Shadel G.S. (Mol. Cell. Biol. 2002) 2 3 4 23
  2. Mitochondrial transcription factors TFA, TFB1 and TFB2: a search for DNA variants/haplotypes and the risk of cardiac hypertrophy. (PMID: 19096125) Alonso-Montes C. … Coto E. (Dis. Markers 2008) 3 4 23 48
  3. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PMID: 10810093) Lai C.-H. … Lin W.-C. (Genome Res. 2000) 2 3 4
  4. Human mitochondrial transcription factor B1 as a modifier gene for hearing loss associated with the mitochondrial A1555G mutation. (PMID: 15110318) Bykhovskaya Y. … Fischel-Ghodsian N. (Mol. Genet. Metab. 2004) 3 4 23
  5. Mutational screening of the mitochondrial transcription factors B1 and B2 (TFB1M and TFB2M) in Parkinson's disease. (PMID: 18980857) SA!nchez-Ferrero E. … Alvarez V. (Parkinsonism Relat. Disord. 2009) 3 23 48

Products for TFB1M Gene

Sources for TFB1M Gene

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