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Aliases for NFIL3 Gene

Aliases for NFIL3 Gene

  • Nuclear Factor, Interleukin 3 Regulated 2 3
  • Interleukin-3 Promoter Transcriptional Activator 3 4
  • Transcriptional Activator NF-IL3A 3 4
  • Interleukin-3-Binding Protein 1 3 4
  • E4 Promoter-Binding Protein 4 3 4
  • IL3BP1 3 4
  • E4BP4 3 4
  • Nuclear Factor Interleukin 3 Regulated Protein 3
  • NF-IL3A 3
  • NFIL3A 3

External Ids for NFIL3 Gene

Previous HGNC Symbols for NFIL3 Gene

  • IL3BP1

Previous GeneCards Identifiers for NFIL3 Gene

  • GC09M085011
  • GC09M085899
  • GC09M087470
  • GC09M089512
  • GC09M091250
  • GC09M093211
  • GC09M094171
  • GC09M063851

Summaries for NFIL3 Gene

Entrez Gene Summary for NFIL3 Gene

  • The protein encoded by this gene is a transcriptional regulator that binds as a homodimer to activating transcription factor (ATF) sites in many cellular and viral promoters. The encoded protein represses PER1 and PER2 expression and therefore plays a role in the regulation of circadian rhythm. Three transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Feb 2014]

GeneCards Summary for NFIL3 Gene

NFIL3 (Nuclear Factor, Interleukin 3 Regulated) is a Protein Coding gene. Among its related pathways are NF-kappaB Signaling. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding and transcription corepressor activity.

UniProtKB/Swiss-Prot for NFIL3 Gene

  • Acts as a transcriptional regulator that recognizes and binds to the sequence 5-[GA]TTA[CT]GTAA[CT]-3, a sequence present in many cellular and viral promoters. Represses transcription from promoters with activating transcription factor (ATF) sites. Represses promoter activity in osteoblasts (By similarity). Represses transcriptional activity of PER1 (By similarity). Represses transcriptional activity of PER2 via the B-site on the promoter (By similarity). Activates transcription from the interleukin-3 promoter in T-cells. Competes for the same consensus-binding site with PAR DNA-binding factors (DBP, HLF and TEF) (By similarity). Component of the circadian clock that acts as a negative regulator for the circadian expression of PER2 oscillation in the cell-autonomous core clock (By similarity). Protects pro-B cells from programmed cell death (By similarity).

Gene Wiki entry for NFIL3 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NFIL3 Gene

Genomics for NFIL3 Gene

Regulatory Elements for NFIL3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for NFIL3 Gene

Chromosome:
9
Start:
91,409,045 bp from pter
End:
91,424,626 bp from pter
Size:
15,582 bases
Orientation:
Minus strand

Genomic View for NFIL3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NFIL3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NFIL3 Gene

Proteins for NFIL3 Gene

  • Protein details for NFIL3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q16649-NFIL3_HUMAN
    Recommended name:
    Nuclear factor interleukin-3-regulated protein
    Protein Accession:
    Q16649
    Secondary Accessions:
    • B2R9Y8
    • Q14211
    • Q6FGQ8
    • Q96HS0

    Protein attributes for NFIL3 Gene

    Size:
    462 amino acids
    Molecular mass:
    51472 Da
    Quaternary structure:
    • Homodimer. Binds DNA as a dimer. Interacts with DR1. Interacts with PER2 and CRY2 (By similarity).

neXtProt entry for NFIL3 Gene

Proteomics data for NFIL3 Gene at MOPED

Post-translational modifications for NFIL3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NFIL3 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for NFIL3 (E4BP4)

No data available for DME Specific Peptides for NFIL3 Gene

Domains & Families for NFIL3 Gene

Gene Families for NFIL3 Gene

Protein Domains for NFIL3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for NFIL3 Gene

Graphical View of Domain Structure for InterPro Entry

Q16649

UniProtKB/Swiss-Prot:

NFIL3_HUMAN :
  • Contains 1 bZIP (basic-leucine zipper) domain.
  • Belongs to the bZIP family. NFIL3 subfamily.
Domain:
  • Contains 1 bZIP (basic-leucine zipper) domain.
Family:
  • Belongs to the bZIP family. NFIL3 subfamily.
genes like me logo Genes that share domains with NFIL3: view

Function for NFIL3 Gene

Molecular function for NFIL3 Gene

UniProtKB/Swiss-Prot Function:
Acts as a transcriptional regulator that recognizes and binds to the sequence 5-[GA]TTA[CT]GTAA[CT]-3, a sequence present in many cellular and viral promoters. Represses transcription from promoters with activating transcription factor (ATF) sites. Represses promoter activity in osteoblasts (By similarity). Represses transcriptional activity of PER1 (By similarity). Represses transcriptional activity of PER2 via the B-site on the promoter (By similarity). Activates transcription from the interleukin-3 promoter in T-cells. Competes for the same consensus-binding site with PAR DNA-binding factors (DBP, HLF and TEF) (By similarity). Component of the circadian clock that acts as a negative regulator for the circadian expression of PER2 oscillation in the cell-autonomous core clock (By similarity). Protects pro-B cells from programmed cell death (By similarity).
UniProtKB/Swiss-Prot Induction:
Up-regulated by PHA or TPA.

Gene Ontology (GO) - Molecular Function for NFIL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA 20093779
GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IEA --
GO:0001078 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding IDA 20093779
GO:0003677 DNA binding TAS 1620116
GO:0003700 transcription factor activity, sequence-specific DNA binding TAS 7565758
genes like me logo Genes that share ontologies with NFIL3: view
genes like me logo Genes that share phenotypes with NFIL3: view

Animal Models for NFIL3 Gene

MGI Knock Outs for NFIL3:

Animal Model Products

miRNA for NFIL3 Gene

miRTarBase miRNAs that target NFIL3

Transcription Factor Targets for NFIL3 Gene

Selected GeneGlobe predicted Target genes for NFIL3

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NFIL3

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) and HOMER Transcription for NFIL3 Gene

Localization for NFIL3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NFIL3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NFIL3 Gene COMPARTMENTS Subcellular localization image for NFIL3 gene
Compartment Confidence
nucleus 4

Gene Ontology (GO) - Cellular Components for NFIL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with NFIL3: view

Pathways & Interactions for NFIL3 Gene

SuperPathways for NFIL3 Gene

Superpath Contained pathways
1 NF-kappaB Signaling
genes like me logo Genes that share pathways with NFIL3: view

Pathways by source for NFIL3 Gene

1 Cell Signaling Technology pathway for NFIL3 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for NFIL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IMP 20093779
GO:0006351 transcription, DNA-templated --
GO:0006355 regulation of transcription, DNA-templated --
GO:0006366 transcription from RNA polymerase II promoter IEA --
GO:0006955 immune response IEA --
genes like me logo Genes that share ontologies with NFIL3: view

No data available for SIGNOR curated interactions for NFIL3 Gene

Drugs & Compounds for NFIL3 Gene

No Compound Related Data Available

Transcripts for NFIL3 Gene

mRNA/cDNA for NFIL3 Gene

Unigene Clusters for NFIL3 Gene

Nuclear factor, interleukin 3 regulated:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NFIL3

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NFIL3 Gene

No ASD Table

Relevant External Links for NFIL3 Gene

GeneLoc Exon Structure for
NFIL3
ECgene alternative splicing isoforms for
NFIL3

Expression for NFIL3 Gene

mRNA expression in normal human tissues for NFIL3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for NFIL3 Gene

This gene is overexpressed in Whole Blood (x6.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for NFIL3 Gene



SOURCE GeneReport for Unigene cluster for NFIL3 Gene Hs.79334

mRNA Expression by UniProt/SwissProt for NFIL3 Gene

Q16649-NFIL3_HUMAN
Tissue specificity: Expressed in bladder stomach, thyroid, spinal cord, lymph node, trachea, adrenal gland, bone marrow and muscle.
genes like me logo Genes that share expression patterns with NFIL3: view

Primer Products

In Situ Assay Products

No data available for Protein differential expression in normal tissues and Protein tissue co-expression partners for NFIL3 Gene

Orthologs for NFIL3 Gene

This gene was present in the common ancestor of animals.

Orthologs for NFIL3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia NFIL3 35
  • 87.01 (n)
  • 90.91 (a)
NFIL3 36
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NFIL3 35
  • 79.58 (n)
  • 86.58 (a)
NFIL3 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nfil3 35
  • 79.54 (n)
  • 84.6 (a)
Nfil3 16
Nfil3 36
  • 84 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia NFIL3 35
  • 99.78 (n)
  • 100 (a)
NFIL3 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nfil3 35
  • 79.1 (n)
  • 83.73 (a)
oppossum
(Monodelphis domestica)
Mammalia NFIL3 36
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NFIL3 36
  • 52 (a)
OneToOne
chicken
(Gallus gallus)
Aves NFIL3 35
  • 81.51 (n)
  • 83.84 (a)
NFIL3 36
  • 84 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NFIL3 36
  • 81 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia nfil3 35
  • 70.07 (n)
  • 69.2 (a)
zebrafish
(Danio rerio)
Actinopterygii nfil3 35
  • 58.35 (n)
  • 53.81 (a)
wufk63e10 35
nfil3 36
  • 48 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta vri 36
  • 11 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea atf-2 36
  • 20 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 15 (a)
OneToOne
Species with no ortholog for NFIL3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for NFIL3 Gene

ENSEMBL:
Gene Tree for NFIL3 (if available)
TreeFam:
Gene Tree for NFIL3 (if available)

Paralogs for NFIL3 Gene

Pseudogenes.org Pseudogenes for NFIL3 Gene

genes like me logo Genes that share paralogs with NFIL3: view

No data available for Paralogs for NFIL3 Gene

Variants for NFIL3 Gene

Sequence variations from dbSNP and Humsavar for NFIL3 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs774230 -- 91,408,589(+) AGATT(A/G)TTATA downstream-variant-500B
rs2440589 -- 91,416,705(+) TACTC(C/T)GAAGG intron-variant
rs2440590 -- 91,417,575(+) AAATA(A/G)GAAAA intron-variant
rs2440591 -- 91,417,800(+) AAGAC(A/G)CACAC intron-variant
rs2440592 -- 91,419,669(+) AACAG(A/G)GCCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NFIL3 Gene

Variant ID Type Subtype PubMed ID
nsv893571 CNV Gain 21882294
nsv824980 CNV Gain 20364138
nsv824981 CNV Gain 20364138

Variation tolerance for NFIL3 Gene

Residual Variation Intolerance Score: 24.04% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.82; 34.18% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NFIL3 Gene

HapMap Linkage Disequilibrium report
NFIL3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NFIL3 Gene

Disorders for NFIL3 Gene

Relevant External Links for NFIL3

Genetic Association Database (GAD)
NFIL3
Human Genome Epidemiology (HuGE) Navigator
NFIL3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NFIL3
genes like me logo Genes that share disorders with NFIL3: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NFIL3 Gene

Publications for NFIL3 Gene

  1. Molecular cloning and characterization of NF-IL3A, a transcriptional activator of the human interleukin-3 promoter. (PMID: 7565758) Zhang W. … Nimer S.D. (Mol. Cell. Biol. 1995) 2 23 67
  2. Expression profile of mRNAs encoding core circadian regulatory proteins in human subcutaneous adipose tissue: correlation with age and body mass index. (PMID: 19597517) Wu X. … Gimble J.M. (Int J Obes (Lond) 2009) 23 67
  3. Negative regulation of the osteoblast function in multiple myeloma through the repressor gene E4BP4 activated by malignant plasma cells. (PMID: 18829486) Silvestris F. … Dammacco F. (Clin. Cancer Res. 2008) 23 67
  4. Molecular basis for rhythmic expression of CYP3A4 in serum-shocked HepG2 cells. (PMID: 18004209) Takiguchi T. … Ohdo S. (Pharmacogenet. Genomics 2007) 23 67
  5. The negative transcription factor E4BP4 is associated with circadian clock protein PERIOD2. (PMID: 17274955) Ohno T. … Ishida N. (Biochem. Biophys. Res. Commun. 2007) 23 67

Products for NFIL3 Gene

Sources for NFIL3 Gene

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