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Aliases for GLRA4 Gene

Aliases for GLRA4 Gene

  • Glycine Receptor, Alpha 4 2 3

External Ids for GLRA4 Gene

Previous GeneCards Identifiers for GLRA4 Gene

  • GC0XM102779
  • GC0XU900745
  • GC0XM102849
  • GC0XM102962
  • GC0XM092619

Summaries for GLRA4 Gene

Entrez Gene Summary for GLRA4 Gene

  • This gene encodes a protein which has a neurotransmitter-gated ion-channel ligand binding domain. The encoded protein is very similar to a mouse protein which is a subunit of the retinal glycine receptor. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2011]

GeneCards Summary for GLRA4 Gene

GLRA4 (Glycine Receptor, Alpha 4) is a Protein Coding gene. Among its related pathways are Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds and Ion channel transport. GO annotations related to this gene include chloride channel activity and glycine binding. An important paralog of this gene is GABRR1.

UniProtKB/Swiss-Prot for GLRA4 Gene

  • The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing)

Tocris Summary for GLRA4 Gene

  • Glycine receptors (GlyR) are members of the cys-loop family of ligand-gated ion channels, responsible for mediating the inhibitory effects of glycine. They are widely distributed throughout the CNS, particularly within the hippocampus, spinal cord and brain stem.

Gene Wiki entry for GLRA4 Gene

No data available for PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GLRA4 Gene

Genomics for GLRA4 Gene

Regulatory Elements for GLRA4 Gene

Genomic Location for GLRA4 Gene

Chromosome:
X
Start:
103,707,224 bp from pter
End:
103,728,655 bp from pter
Size:
21,432 bases
Orientation:
Minus strand

Genomic View for GLRA4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GLRA4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GLRA4 Gene

Proteins for GLRA4 Gene

  • Protein details for GLRA4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JXX5-GLRA4_HUMAN
    Recommended name:
    Glycine receptor subunit alpha-4
    Protein Accession:
    Q5JXX5

    Protein attributes for GLRA4 Gene

    Size:
    417 amino acids
    Molecular mass:
    47728 Da
    Quaternary structure:
    • Pentamer composed of alpha and beta subunits.
    Miscellaneous:
    • The alpha subunit binds strychnine.

neXtProt entry for GLRA4 Gene

Proteomics data for GLRA4 Gene at MOPED

Post-translational modifications for GLRA4 Gene

  • Glycosylation at Asn 72
  • Modification sites at PhosphoSitePlus

Other Protein References for GLRA4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for GLRA4 Gene

Domains & Families for GLRA4 Gene

Gene Families for GLRA4 Gene

Suggested Antigen Peptide Sequences for GLRA4 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5JXX5

UniProtKB/Swiss-Prot:

GLRA4_HUMAN :
  • Belongs to the ligand-gated ion channel (TC 1.A.9) family. Glycine receptor (TC 1.A.9.3) subfamily. GLRA4 sub-subfamily.
Family:
  • Belongs to the ligand-gated ion channel (TC 1.A.9) family. Glycine receptor (TC 1.A.9.3) subfamily. GLRA4 sub-subfamily.
genes like me logo Genes that share domains with GLRA4: view

Function for GLRA4 Gene

Molecular function for GLRA4 Gene

UniProtKB/Swiss-Prot Function:
The glycine receptor is a neurotransmitter-gated ion channel. Binding of glycine to its receptor increases the chloride conductance and thus produces hyperpolarization (inhibition of neuronal firing)

Gene Ontology (GO) - Molecular Function for GLRA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005230 extracellular ligand-gated ion channel activity --
GO:0016594 contributes_to glycine binding IBA --
GO:0016934 contributes_to extracellular-glycine-gated chloride channel activity IBA --
GO:0022824 transmitter-gated ion channel activity IEA --
genes like me logo Genes that share ontologies with GLRA4: view

Phenotypes for GLRA4 Gene

GenomeRNAi human phenotypes for GLRA4:
genes like me logo Genes that share phenotypes with GLRA4: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for GLRA4 Gene

Localization for GLRA4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GLRA4 Gene

Cell junction, synapse, postsynaptic cell membrane; Multi-pass membrane protein. Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GLRA4 Gene COMPARTMENTS Subcellular localization image for GLRA4 gene
Compartment Confidence
plasma membrane 3

Gene Ontology (GO) - Cellular Components for GLRA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane IBA --
GO:0016020 membrane --
GO:0016021 integral component of membrane --
GO:0030054 cell junction IEA --
GO:0034707 chloride channel complex IEA --
genes like me logo Genes that share ontologies with GLRA4: view

Pathways & Interactions for GLRA4 Gene

genes like me logo Genes that share pathways with GLRA4: view

Pathways by source for GLRA4 Gene

Interacting Proteins for GLRA4 Gene

Gene Ontology (GO) - Biological Process for GLRA4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006810 transport --
GO:0006811 ion transport --
GO:0007218 neuropeptide signaling pathway IBA --
GO:0042391 regulation of membrane potential IBA --
GO:0043200 response to amino acid IBA --
genes like me logo Genes that share ontologies with GLRA4: view

No data available for SIGNOR curated interactions for GLRA4 Gene

Drugs & Compounds for GLRA4 Gene

(4) Drugs for GLRA4 Gene - From: Tocris

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
L-Alanine Approved Nutra Full agonist, Agonist Glycine receptor agonist 0
L-Serine Approved Nutra Full agonist, Agonist Weak endogenous glycine receptor agonist 0
beta-Alanine Experimental Pharma Full agonist, Agonist Endogenous glycine agonist, more selective than taurine (Cat. No. 0209) 0
Taurine Experimental Nutra Non-selective, endogenous glycine receptor partial agonist 21

(2) Additional Compounds for GLRA4 Gene - From: HMDB and Tocris

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Chloride ion
  • Bertholite
  • Chloor
  • Chlor
  • Chlore
  • Chloride
16887-00-6
Hypotaurine
  • 2-Amino-Ethanesulfinate
  • 2-Amino-Ethanesulfinic acid
  • 2-Aminoethanesulfinate
  • 2-Aminoethanesulfinic acid
  • 2-Aminoethylsulfinate
300-84-5
genes like me logo Genes that share compounds with GLRA4: view

Transcripts for GLRA4 Gene

mRNA/cDNA for GLRA4 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for GLRA4 Gene

Glycine receptor, alpha 4:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GLRA4

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GLRA4 Gene

No ASD Table

Relevant External Links for GLRA4 Gene

GeneLoc Exon Structure for
GLRA4
ECgene alternative splicing isoforms for
GLRA4

Expression for GLRA4 Gene

mRNA expression in normal human tissues for GLRA4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GLRA4 Gene

This gene is overexpressed in Brain - Cerebellum (x4.7) and Brain - Cerebellar Hemisphere (x4.0).

SOURCE GeneReport for Unigene cluster for GLRA4 Gene Hs.533289

genes like me logo Genes that share expression patterns with GLRA4: view

Primer Products

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for GLRA4 Gene

Orthologs for GLRA4 Gene

This gene was present in the common ancestor of animals.

Orthologs for GLRA4 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia GLRA4 35
  • 92.81 (n)
  • 94 (a)
GLRA4 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Glra4 35
  • 90.06 (n)
  • 94.95 (a)
Glra4 16
Glra4 36
  • 87 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia GLRA4 35
  • 99.04 (n)
  • 98.56 (a)
GLRA4 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Glra4 35
  • 89.5 (n)
  • 93.51 (a)
cow
(Bos Taurus)
Mammalia GLRA4 36
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia GLRA4 36
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GLRA4 36
  • 80 (a)
OneToOne
chicken
(Gallus gallus)
Aves GLRA4 35
  • 80.8 (n)
  • 89.6 (a)
GLRA4 36
  • 78 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GLRA4 36
  • 75 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii glra4a 35
  • 76.75 (n)
  • 87.8 (a)
glra4a 36
  • 75 (a)
OneToMany
glra4b 36
  • 57 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006028 35
  • 49.63 (n)
  • 44.41 (a)
fruit fly
(Drosophila melanogaster)
Insecta Rdl 35
  • 51.45 (n)
  • 45.99 (a)
worm
(Caenorhabditis elegans)
Secernentea lgc-38 35
  • 53.15 (n)
  • 45.95 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 55 (a)
OneToMany
Species with no ortholog for GLRA4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for GLRA4 Gene

ENSEMBL:
Gene Tree for GLRA4 (if available)
TreeFam:
Gene Tree for GLRA4 (if available)

Paralogs for GLRA4 Gene

genes like me logo Genes that share paralogs with GLRA4: view

Variants for GLRA4 Gene

Sequence variations from dbSNP and Humsavar for GLRA4 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2092623 -- 103,714,847(+) CCAGG(G/T)ACATT intron-variant
rs2239814 -- 103,725,064(+) CAGTT(A/G)TGTGC intron-variant
rs3926332 -- 103,727,719(+) CCCAG(A/C)TCCAT intron-variant
rs4907817 -- 103,724,558(+) GGTGA(C/T)GGAGC reference, missense
rs4907846 -- 103,725,719(+) GGGAT(A/G)GGAAA intron-variant

Variation tolerance for GLRA4 Gene

Residual Variation Intolerance Score: 79.29% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.78; 78.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GLRA4 Gene

HapMap Linkage Disequilibrium report
GLRA4
Human Gene Mutation Database (HGMD)
GLRA4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for GLRA4 Gene

Disorders for GLRA4 Gene

Relevant External Links for GLRA4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GLRA4
genes like me logo Genes that share disorders with GLRA4: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for GLRA4 Gene

Publications for GLRA4 Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 67

Products for GLRA4 Gene

Sources for GLRA4 Gene

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