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Aliases for LRP1 Gene

Aliases for LRP1 Gene

  • Low Density Lipoprotein Receptor-Related Protein 1 2 3
  • Alpha-2-Macroglobulin Receptor 2 3 4
  • Apolipoprotein E Receptor 3 4
  • APOER 3 4
  • LRP-1 3 4
  • A2MR 3 4
  • APR 3 4
  • TbetaR-V/LRP-1/IGFBP-3 Receptor 3
  • Type V Tgf-Beta Receptor 3
  • CD91 Antigen 4
  • EC 3.4.21.9 63
  • EC 1.1.1.94 63
  • IGFBP3R 3
  • TGFBR5 3
  • LRP1A 3
  • CD91 3
  • LRP 3

External Ids for LRP1 Gene

Previous HGNC Symbols for LRP1 Gene

  • APR
  • A2MR

Previous GeneCards Identifiers for LRP1 Gene

  • GC12P057497
  • GC12P057746
  • GC12P057239
  • GC12P055808
  • GC12P054560

Summaries for LRP1 Gene

Entrez Gene Summary for LRP1 Gene

  • This gene encodes a member of the low-density lipoprotein receptor family of proteins. The encoded preproprotein is proteolytically processed by furin to generate 515 kDa and 85 kDa subunits that form the mature receptor (PMID: 8546712). This receptor is involved in several cellular processes, including intracellular signaling, lipid homeostasis, and clearance of apoptotic cells. In addition, the encoded protein is necessary for the alpha 2-macroglobulin-mediated clearance of secreted amyloid precursor protein and beta-amyloid, the main component of amyloid plaques found in Alzheimer patients. Expression of this gene decreases with age and has been found to be lower than controls in brain tissue from Alzheimer's disease patients. [provided by RefSeq, Oct 2015]

GeneCards Summary for LRP1 Gene

LRP1 (Low Density Lipoprotein Receptor-Related Protein 1) is a Protein Coding gene. Diseases associated with LRP1 include myxoid liposarcoma and cerebral amyloid angiopathy. Among its related pathways are Signaling by GPCR and Alzheimers Disease Pathway. GO annotations related to this gene include poly(A) RNA binding and receptor activity. An important paralog of this gene is LRP1B.

UniProtKB/Swiss-Prot for LRP1 Gene

  • Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Required for early embryonic development. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors. May modulate cellular events, such as APP metabolism, kinase-dependent intracellular signaling, neuronal calcium signaling as well as neurotransmission

  • Functions as a receptor for Pseudomonas aeruginosa exotoxin A

Gene Wiki entry for LRP1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LRP1 Gene

Genomics for LRP1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for LRP1 Gene

Chromosome:
12
Start:
57,128,493 bp from pter
End:
57,213,359 bp from pter
Size:
84,867 bases
Orientation:
Plus strand

Genomic View for LRP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LRP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LRP1 Gene

Proteins for LRP1 Gene

  • Protein details for LRP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q07954-LRP1_HUMAN
    Recommended name:
    Prolow-density lipoprotein receptor-related protein 1
    Protein Accession:
    Q07954
    Secondary Accessions:
    • Q2PP12
    • Q86SW0
    • Q8IVG8

    Protein attributes for LRP1 Gene

    Size:
    4544 amino acids
    Molecular mass:
    504606 Da
    Quaternary structure:
    • Heterodimer of an 85-kDa membrane-bound carboxyl subunit and a non-covalently attached 515-kDa N-terminal subunit. Intracellular domain interacts with MAFB (By similarity). Found in a complex with PID1/PCLI1, LRP1 and CUBNI. Interacts with SNX17, PID1/PCLI1, PDGF and CUBN. The intracellular domain interacts with SHC1, GULP1 and DAB1. Interacts with LRPAP1. Can weakly interact (via NPXY motif) with DAB2 (via PID domain); the interaction is enhanced by tyrosine phosphorylation of the NPXY motif. Interacts with bacterial exotoxins.

    Three dimensional structures from OCA and Proteopedia for LRP1 Gene

    Alternative splice isoforms for LRP1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LRP1 Gene

Proteomics data for LRP1 Gene at MOPED

Selected DME Specific Peptides for LRP1 Gene

Post-translational modifications for LRP1 Gene

  • Cleaved into a 85 kDa membrane-spanning subunit (LRP-85) and a 515 kDa large extracellular domain (LRP-515) that remains non-covalently associated. Gamma-secretase-dependent cleavage of LRP-85 releases the intracellular domain from the membrane.
  • Phosphorylated on serine and threonine residues
  • Phosphorylated on tyrosine residues upon stimulation with PDGF. Tyrosine phosphorylation promotes interaction with SHC1
  • The N-terminus is blocked
  • Glycosylation at Asn 114, Asn 136, Asn 185, Asn 239, Asn 274, Asn 357, Asn 446, Asn 729, Thr 894, Ser 897, Asn 928, Asn 1050, Thr 1101, Asn 1154, Asn 1155, Asn 1195, Asn 1218, Asn 1511, Asn 1558, Asn 1575, Asn 1616, Asn 1645, Asn 1723, Asn 1733, Asn 1763, Asn 1825, Asn 1933, Asn 1995, Asn 2048, Asn 2117, Asn 2127, Asn 2472, Asn 2502, Asn 2521, Asn 2539, Asn 2601, Asn 2620, Asn 2638, Thr 2773, Asn 2815, Thr 2857, Asn 2905, Asn 3048, Asn 3089, Asn 3264, Asn 3333, Asn 3488, Thr 3535, Asn 3662, Thr 3735, Asn 3788, Asn 3839, Asn 3953, Asn 4075, Asn 4125, Asn 4179, Asn 4278, Asn 4279, and Asn 4364
  • Modification sites at PhosphoSitePlus

Other Protein References for LRP1 Gene

Antibody Products

Protein Products

Domains & Families for LRP1 Gene

Suggested Antigen Peptide Sequences for LRP1 Gene

Graphical View of Domain Structure for InterPro Entry

Q07954

UniProtKB/Swiss-Prot:

LRP1_HUMAN :
  • Contains 22 EGF-like domains.
  • Belongs to the LDLR family.
  • Contains 34 LDL-receptor class B repeats.
Domain:
  • Contains 22 EGF-like domains.
  • Contains 31 LDL-receptor class A domains.
Family:
  • Belongs to the LDLR family.
Similarity:
  • Contains 34 LDL-receptor class B repeats.
genes like me logo Genes that share domains with LRP1: view

Function for LRP1 Gene

Molecular function for LRP1 Gene

GENATLAS Biochemistry:
low-density lipoprotein receptor related protein 1,600kDa,LDLR superfamily,putative susceptibility factor for Alzheimer disease
UniProtKB/Swiss-Prot Function:
Endocytic receptor involved in endocytosis and in phagocytosis of apoptotic cells. Required for early embryonic development. Involved in cellular lipid homeostasis. Involved in the plasma clearance of chylomicron remnants and activated LRPAP1 (alpha 2-macroglobulin), as well as the local metabolism of complexes between plasminogen activators and their endogenous inhibitors. May modulate cellular events, such as APP metabolism, kinase-dependent intracellular signaling, neuronal calcium signaling as well as neurotransmission
UniProtKB/Swiss-Prot Function:
Functions as a receptor for Pseudomonas aeruginosa exotoxin A

Enzyme Numbers (IUBMB) for LRP1 Gene

Gene Ontology (GO) - Molecular Function for LRP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002020 protease binding IEA --
GO:0004872 receptor activity TAS 10880251
GO:0005509 calcium ion binding ISS --
GO:0005515 protein binding IPI 8626514
GO:0032403 protein complex binding IDA 8626514
genes like me logo Genes that share ontologies with LRP1: view
genes like me logo Genes that share phenotypes with LRP1: view

Animal Models for LRP1 Gene

MGI Knock Outs for LRP1:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for LRP1

In Situ Assay Products

Flow Cytometry Products

No data available for Transcription Factor Targets and HOMER Transcription for LRP1 Gene

Localization for LRP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LRP1 Gene

Low-density lipoprotein receptor-related protein 1 85 kDa subunit: Cell membrane; Single-pass type I membrane protein. Membrane, coated pit.
Low-density lipoprotein receptor-related protein 1 515 kDa subunit: Cell membrane; Peripheral membrane protein; Extracellular side. Membrane, coated pit.
Low-density lipoprotein receptor-related protein 1 intracellular domain: Cytoplasm. Nucleus. Note=After cleavage, the intracellular domain (LRPICD) is detected both in the cytoplasm and in the nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for LRP1 Gene COMPARTMENTS Subcellular localization image for LRP1 gene
Compartment Confidence
lysosome 5
nucleus 5
plasma membrane 5
vacuole 5
cytosol 2
endosome 2
extracellular 2
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for LRP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm IDA --
GO:0005765 lysosomal membrane IDA 17897319
GO:0005768 endosome IEA --
GO:0005886 plasma membrane TAS --
genes like me logo Genes that share ontologies with LRP1: view

Pathways & Interactions for LRP1 Gene

genes like me logo Genes that share pathways with LRP1: view

Pathways by source for LRP1 Gene

PCR Array Products

SIGNOR curated interactions for LRP1 Gene

Is activated by:

Gene Ontology (GO) - Biological Process for LRP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001523 retinoid metabolic process TAS --
GO:0006898 receptor-mediated endocytosis TAS --
GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway IEA --
GO:0007568 aging IEA --
GO:0007603 phototransduction, visible light TAS --
genes like me logo Genes that share ontologies with LRP1: view

Drugs & Compounds for LRP1 Gene

(28) Drugs for LRP1 Gene - From: NovoSeek, DrugBank, ApexBio, and HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Antihemophilic Factor Approved, Investigational Pharma Target, modulator 0
Coagulation Factor IX Approved Pharma Target 0
Tenecteplase Approved Pharma Target 38
Aprotinin Approved, Withdrawn Pharma Inhibitor of bovine pancreatic trypsin 24
Bleomycin Approved Pharma 142

(29) Additional Compounds for LRP1 Gene - From: NovoSeek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
125I
Alpha 2 Macroglobulin
aspartate
Carbohydrates
chlorate
  • Chlorate
  • Chlorate ion
  • Chloric acid
  • Chlorine oxide
14866-68-3
genes like me logo Genes that share compounds with LRP1: view

Transcripts for LRP1 Gene

Unigene Clusters for LRP1 Gene

Low density lipoprotein receptor-related protein 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for LRP1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for LRP1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11a · 11b ^ 12 ^ 13a · 13b ^ 14a · 14b ^ 15a · 15b ^ 16 ^ 17 ^
SP1: - -
SP2: -
SP3:
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SP14: -
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SP27:
SP28:

ExUns: 18 ^ 19 ^ 20a · 20b ^ 21a · 21b ^ 22 ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28 ^ 29 ^ 30 ^ 31a · 31b · 31c ^ 32 ^ 33 ^ 34 ^ 35a · 35b ^ 36 ^ 37 ^ 38 ^
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SP28:

ExUns: 39 ^ 40 ^ 41 ^ 42 ^ 43a · 43b ^ 44 ^ 45 ^ 46a · 46b ^ 47a · 47b ^ 48 ^ 49 ^ 50a · 50b · 50c ^ 51a · 51b ^ 52a · 52b ^ 53a · 53b · 53c · 53d ^ 54a ·
SP1:
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SP7:
SP8:
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SP10:
SP11: -
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SP14:
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SP17:
SP18: - -
SP19:
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SP21:
SP22:
SP23:
SP24:
SP25:
SP26:
SP27:
SP28:

ExUns: 54b ^ 55 ^ 56 ^ 57a · 57b · 57c ^ 58 ^ 59 ^ 60a · 60b ^ 61a · 61b ^ 62a · 62b · 62c ^ 63 ^ 64a · 64b ^ 65 ^ 66 ^ 67 ^ 68 ^ 69 ^
SP1:
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SP28:

Relevant External Links for LRP1 Gene

GeneLoc Exon Structure for
LRP1
ECgene alternative splicing isoforms for
LRP1

Expression for LRP1 Gene

mRNA expression in normal human tissues for LRP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for LRP1 Gene

This gene is overexpressed in Serum (13.2) and Bone marrow stromal cell (6.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for LRP1 Gene



SOURCE GeneReport for Unigene cluster for LRP1 Gene Hs.162757

mRNA Expression by UniProt/SwissProt for LRP1 Gene

Q07954-LRP1_HUMAN
Tissue specificity: Most abundant in liver, brain and lung
genes like me logo Genes that share expression patterns with LRP1: view

Protein tissue co-expression partners for LRP1 Gene

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for LRP1 Gene

Orthologs for LRP1 Gene

This gene was present in the common ancestor of animals.

Orthologs for LRP1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia LRP1 35
  • 91.79 (n)
  • 98.2 (a)
LRP1 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LRP1 35
  • 92.42 (n)
  • 98.48 (a)
LRP1 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Lrp1 35
  • 89.59 (n)
  • 98.03 (a)
Lrp1 16
Lrp1 36
  • 98 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia LRP1 35
  • 93.65 (n)
  • 92.05 (a)
LRP1 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Lrp1 35
  • 89.6 (n)
  • 97.97 (a)
oppossum
(Monodelphis domestica)
Mammalia LRP1 36
  • 92 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia LRP1 36
  • 44 (a)
OneToOne
chicken
(Gallus gallus)
Aves LRP1 35
  • 81.14 (n)
  • 87.09 (a)
LRP1 36
  • 86 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia LRP1 36
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100485788 35
  • 73.68 (n)
  • 82.49 (a)
Str.10942 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.18251 35
zebrafish
(Danio rerio)
Actinopterygii LOC565797 35
  • 72.43 (n)
  • 76.84 (a)
lrp1b 36
  • 76 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta yl 37
  • 27 (a)
LRP1 35
  • 49.79 (n)
  • 40.19 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP012372 35
  • 51.09 (n)
  • 40.74 (a)
worm
(Caenorhabditis elegans)
Secernentea B0244.8 37
  • 31 (a)
F47B3.8 37
  • 29 (a)
lrp-1 37
  • 32 (a)
R01H2.3 37
  • 32 (a)
rme-2 37
  • 27 (a)
T21E3.3 37
  • 31 (a)
F14B4.1 36
  • 28 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 33 (a)
ManyToMany
Species with no ortholog for LRP1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for LRP1 Gene

ENSEMBL:
Gene Tree for LRP1 (if available)
TreeFam:
Gene Tree for LRP1 (if available)

Paralogs for LRP1 Gene

Paralogs for LRP1 Gene

Pseudogenes.org Pseudogenes for LRP1 Gene

genes like me logo Genes that share paralogs with LRP1: view

Variants for LRP1 Gene

Sequence variations from dbSNP and Humsavar for LRP1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs377819 -- 57,138,947(-) AAGAT(C/G/T)TGAGG intron-variant
rs377834 -- 57,138,938(-) GGATC(C/G)GACAA intron-variant
rs380732 -- 57,134,073(-) GGCAG(A/C/G)AGGTG intron-variant
rs432134 -- 57,138,960(-) CAAAG(C/G)ACAGA intron-variant
rs448011 -- 57,138,953(-) CAGAG(A/G)AAGTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LRP1 Gene

Variant ID Type Subtype PubMed ID
nsv832428 CNV Gain 17160897
dgv96n21 CNV Loss 19592680
dgv1428n71 CNV Loss 21882294
nsv819001 CNV Loss 19587683
nsv899114 CNV Loss 21882294
nsv519293 CNV Loss 19592680
esv2571611 CNV Insertion 19546169
nsv899115 CNV Gain+Loss 21882294
nsv899116 CNV Loss 21882294

Variation tolerance for LRP1 Gene

Residual Variation Intolerance Score: .05% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.68; 65.98% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for LRP1 Gene

HapMap Linkage Disequilibrium report
LRP1
Human Gene Mutation Database (HGMD)
LRP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LRP1 Gene

Disorders for LRP1 Gene

MalaCards: The human disease database

(5) MalaCards diseases for LRP1 Gene - From: DISEASES, NovoSeek, and GeneCards

Disorder Aliases PubMed IDs
myxoid liposarcoma
  • liposarcoma myxoid
cerebral amyloid angiopathy
  • dutch hereditary cerebral amyloid angiopathy
argyrophilic grain disease
  • braak disease
liposarcoma
alzheimer disease
  • alzheimer disease, late-onset
- elite association
Search LRP1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for LRP1

Genetic Association Database (GAD)
LRP1
Human Genome Epidemiology (HuGE) Navigator
LRP1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
LRP1
genes like me logo Genes that share disorders with LRP1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LRP1 Gene

Publications for LRP1 Gene

  1. Low-density lipoprotein receptor-related protein 1: new functions for an old molecule. (PMID: 21391865) Franchini M. … Montagnana M. (Clin. Chem. Lab. Med. 2011) 25 67
  2. Decreased levels of PSD95 and two associated proteins and increased levels of BCl2 and caspase 3 in hippocampus from subjects with amnestic mild cognitive impairment: Insights into their potential roles for loss of synapses and memory, accumulation of Abeta, and neurodegeneration in a prodromal stage of Alzheimer's disease. (PMID: 19774677) Sultana R. … Butterfield D.A. (J. Neurosci. Res. 2010) 23 67
  3. Low density lipoprotein receptor-related protein (LRP1) regulates Rac1 and RhoA reciprocally to control Schwann cell adhesion and migration. (PMID: 20197276) Mantuano E. … Campana W.M. (J. Biol. Chem. 2010) 23 67
  4. Extensive proteomic screening identifies the obesity-related NYGGF4 protein as a novel LRP1-interactor, showing reduced expression in early Alzheimer's disease. (PMID: 20205790) Kajiwara Y. … Buxbaum J.D. (Mol Neurodegener 2010) 23 67
  5. Molecular insights and therapeutic targets for blood-brain barrier disruption in ischemic stroke: critical role of matrix metalloproteinases and tissue-type plasminogen activator. (PMID: 20302940) Jin R. … Li G. (Neurobiol. Dis. 2010) 23 67

Products for LRP1 Gene

Sources for LRP1 Gene

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