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Aliases for LIMK2 Gene

Aliases for LIMK2 Gene

  • LIM Domain Kinase 2 2 3
  • EC 2.7.11.1 4 63
  • LIMK-2 4

External Ids for LIMK2 Gene

Summaries for LIMK2 Gene

Entrez Gene Summary for LIMK2 Gene

  • There are approximately 40 known eukaryotic LIM proteins, so named for the LIM domains they contain. LIM domains are highly conserved cysteine-rich structures containing 2 zinc fingers. Although zinc fingers usually function by binding to DNA or RNA, the LIM motif probably mediates protein-protein interactions. LIM kinase-1 and LIM kinase-2 belong to a small subfamily with a unique combination of 2 N-terminal LIM motifs and a C-terminal protein kinase domain. The protein encoded by this gene is phosphorylated and activated by ROCK, a downstream effector of Rho, and the encoded protein, in turn, phosphorylates cofilin, inhibiting its actin-depolymerizing activity. It is thought that this pathway contributes to Rho-induced reorganization of the actin cytoskeleton. At least three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for LIMK2 Gene

LIMK2 (LIM Domain Kinase 2) is a Protein Coding gene. Among its related pathways are Regulation of actin cytoskeleton and L1CAM interactions. GO annotations related to this gene include protein heterodimerization activity and protein serine/threonine kinase activity. An important paralog of this gene is LIMK1.

UniProtKB/Swiss-Prot for LIMK2 Gene

  • Displays serine/threonine-specific phosphorylation of myelin basic protein and histone (MBP) in vitro.

Gene Wiki entry for LIMK2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LIMK2 Gene

Genomics for LIMK2 Gene

Genomic Location for LIMK2 Gene

Start:
31,212,239 bp from pter
End:
31,280,080 bp from pter
Size:
67,842 bases
Orientation:
Plus strand

Genomic View for LIMK2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LIMK2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LIMK2 Gene

Regulatory Elements for LIMK2 Gene

Proteins for LIMK2 Gene

  • Protein details for LIMK2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P53671-LIMK2_HUMAN
    Recommended name:
    LIM domain kinase 2
    Protein Accession:
    P53671
    Secondary Accessions:
    • A8K6H5
    • Q7KZ80
    • Q7L3H5
    • Q96E10
    • Q99464
    • Q9UFU0

    Protein attributes for LIMK2 Gene

    Size:
    638 amino acids
    Molecular mass:
    72232 Da
    Quaternary structure:
    • Binds ROCK1 and LKAP. Interacts with PARD3. Interacts with NISCH (By similarity).
    SequenceCaution:
    • Sequence=AAB54055.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for LIMK2 Gene

    Alternative splice isoforms for LIMK2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for LIMK2 Gene

Proteomics data for LIMK2 Gene at MOPED

Post-translational modifications for LIMK2 Gene

Other Protein References for LIMK2 Gene

Domains for LIMK2 Gene

Gene Families for LIMK2 Gene

Suggested Antigen Peptide Sequences for LIMK2 Gene

Graphical View of Domain Structure for InterPro Entry

P53671

UniProtKB/Swiss-Prot:

LIMK2_HUMAN
Domain:
  • Contains 2 LIM zinc-binding domains.:
    • P53671
  • Contains 1 PDZ (DHR) domain.:
    • P53671
  • Contains 1 protein kinase domain.:
    • P53671
Family:
  • Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family.:
    • P53671
genes like me logo Genes that share domains with LIMK2: view

Function for LIMK2 Gene

Molecular function for LIMK2 Gene

GENATLAS Biochemistry: LIM motif containing protein kinase 2,cytosolic,alternatively spliced in two isoforms LIMK2A and LIMK2B differentially regulated in a tissue specific manner
UniProtKB/Swiss-Prot CatalyticActivity: ATP + a protein = ADP + a phosphoprotein
UniProtKB/Swiss-Prot Function: Displays serine/threonine-specific phosphorylation of myelin basic protein and histone (MBP) in vitro.

Enzyme Numbers (IUBMB) for LIMK2 Gene

Gene Ontology (GO) - Molecular Function for LIMK2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004672 protein kinase activity --
GO:0004674 protein serine/threonine kinase activity TAS 8537403
GO:0004713 protein tyrosine kinase activity --
GO:0005515 protein binding IPI 22939624
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with LIMK2: view
genes like me logo Genes that share phenotypes with LIMK2: view

Animal Models for LIMK2 Gene

MGI Knock Outs for LIMK2:

No data available for miRNA , Transcription Factor Targeting and HOMER Transcription for LIMK2 Gene

Localization for LIMK2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LIMK2 Gene

Isoform LIMK2a: Cytoplasm. Nucleus. Note=Isoform LIMK2a is distributed in the cytoplasm and the nucleus.
Isoform LIMK2b: Cytoplasm. Nucleus. Note=Isoform LIMK2b occurs mainly in the cytoplasm and is scarcely translocated to the nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for LIMK2 Gene COMPARTMENTS Subcellular localization image for LIMK2 gene
Compartment Confidence
nucleus 5
cytosol 3
cytoskeleton 2

Gene Ontology (GO) - Cellular Components for LIMK2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus TAS 8954941
GO:0005737 cytoplasm TAS 8537403
GO:0005801 cis-Golgi network IEA --
genes like me logo Genes that share ontologies with LIMK2: view

Pathways for LIMK2 Gene

genes like me logo Genes that share pathways with LIMK2: view

Gene Ontology (GO) - Biological Process for LIMK2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006468 protein phosphorylation IEA --
GO:0007283 spermatogenesis IEA --
GO:0016310 phosphorylation TAS 8537403
GO:0042325 regulation of phosphorylation --
genes like me logo Genes that share ontologies with LIMK2: view

Compounds for LIMK2 Gene

(2) HMDB Compounds for LIMK2 Gene

Compound Synonyms Cas Number PubMed IDs
Adenosine triphosphate
  • 5'-(tetrahydrogen triphosphate) Adenosine
56-65-5
ADP
  • adenosindiphosphorsaeure
58-64-0

(4) Novoseek inferred chemical compound relationships for LIMK2 Gene

Compound -log(P) Hits PubMed IDs
leptomycin b 62.6 2
threonine 43.9 3
serine 30.1 3
tyrosine 0 1
genes like me logo Genes that share compounds with LIMK2: view

Transcripts for LIMK2 Gene

Unigene Clusters for LIMK2 Gene

LIM domain kinase 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LIMK2 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9a · 9b · 9c ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^
SP1: - - - - - -
SP2: - - - - - - - - - - - - -
SP3: -
SP4:
SP5: - - - - - - -
SP6: - - -
SP7:
SP8: - - - - - - - - -
SP9: - - - - - - - - - - - -
SP10: - - - - - - - - - - - - -
SP11: - - -
SP12:
SP13:
SP14:
SP15:

ExUns: 14a · 14b · 14c ^ 15a · 15b ^ 16a · 16b ^ 17 ^ 18a · 18b
SP1: - - -
SP2: - - -
SP3: -
SP4: - -
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:

Relevant External Links for LIMK2 Gene

GeneLoc Exon Structure for
LIMK2
ECgene alternative splicing isoforms for
LIMK2

Expression for LIMK2 Gene

mRNA expression in normal human tissues for LIMK2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for LIMK2 Gene

This gene is overexpressed in Whole Blood (11.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for LIMK2 Gene

SOURCE GeneReport for Unigene cluster for LIMK2 Gene Hs.474596

mRNA Expression by UniProt/SwissProt for LIMK2 Gene

P53671-LIMK2_HUMAN
Tissue specificity: Highest expression in the placenta; moderate level in liver, lung, kidney, and pancreas. LIMK2a is found to be more abundant then LIMK2b in liver, colon, stomach, and spleen, while in brain, kidney, and placenta LIMK2b is the dominant form. In adult lung, both LIMK2a and LIMK2b is nearly equally observed.
genes like me logo Genes that share expressions with LIMK2: view

Orthologs for LIMK2 Gene

This gene was present in the common ancestor of animals.

Orthologs for LIMK2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LIMK2 35
  • 99.27 (n)
  • 99.69 (a)
LIMK2 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LIMK2 35
  • 90.13 (n)
  • 92.16 (a)
LIMK2 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LIMK2 35
  • 91.95 (n)
  • 95.45 (a)
LIMK2 36
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Limk2 35
  • 88.35 (n)
  • 93.1 (a)
Limk2 16
Limk2 36
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia LIMK2 36
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia LIMK2 36
  • 86 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Limk2 35
  • 88.51 (n)
  • 92.95 (a)
chicken
(Gallus gallus)
Aves LIMK2 35
  • 79.47 (n)
  • 86.52 (a)
LIMK2 36
  • 78 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 35 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia limk2 35
  • 65.23 (n)
  • 65.29 (a)
zebrafish
(Danio rerio)
Actinopterygii limk2 35
  • 68.13 (n)
  • 69.64 (a)
limk2 36
  • 61 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta LIMK1 36
  • 21 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea K09B11.5 36
  • 17 (a)
ManyToMany
kin-21 36
  • 17 (a)
ManyToMany
T25B9.5 36
  • 16 (a)
ManyToMany
Y52D5A.2 36
  • 17 (a)
ManyToMany
Y69E1A.3 36
  • 16 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 41 (a)
OneToMany
Species with no ortholog for LIMK2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for LIMK2 Gene

ENSEMBL:
Gene Tree for LIMK2 (if available)
TreeFam:
Gene Tree for LIMK2 (if available)

Paralogs for LIMK2 Gene

Paralogs for LIMK2 Gene

Pseudogenes.org Pseudogenes for LIMK2 Gene

genes like me logo Genes that share paralogs with LIMK2: view

Variants for LIMK2 Gene

Sequence variations from dbSNP and Humsavar for LIMK2 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs713947 -- 31,243,523(-) ATAAC(A/C)GGCAG intron-variant
rs715485 -- 31,211,959(-) ATGGC(G/T)TCGCT upstream-variant-2KB
rs730286 -- 31,223,716(-) CCATC(A/T)CTCTC intron-variant
rs737684 -- 31,263,841(-) GTTAA(C/G)TTTTT intron-variant
rs737809 -- 31,250,462(-) ACAAA(C/T)GGCAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for LIMK2 Gene

Variant ID Type Subtype PubMed ID
nsv459871 CNV Loss 19166990
esv2543296 CNV Insertion 19546169

Relevant External Links for LIMK2 Gene

HapMap Linkage Disequilibrium report
LIMK2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for LIMK2 Gene

Disorders for LIMK2 Gene

(4) Novoseek inferred disease relationships for LIMK2 Gene

Disease -log(P) Hits PubMed IDs
williams syndrome 54.9 1
metastasis 0 1
tumors 0 1
cancer 0 1

Relevant External Links for LIMK2

Genetic Association Database (GAD)
LIMK2
Human Genome Epidemiology (HuGE) Navigator
LIMK2
genes like me logo Genes that share disorders with LIMK2: view

No data available for UniProtKB/Swiss-Prot for LIMK2 Gene

Publications for LIMK2 Gene

  1. Identification and characterization of a novel family of serine/threonine kinases containing two N-terminal LIM motifs. (PMID: 8537403) Okano I. … Mizuno K. (J. Biol. Chem. 1995) 2 3 4 23
  2. Specific activation of LIM kinase 2 via phosphorylation of threonine 505 by ROCK, a Rho-dependent protein kinase. (PMID: 11018042) Sumi T. … Nakamura T. (J. Biol. Chem. 2001) 3 4 23
  3. Activation of LIM kinases by myotonic dystrophy kinase-related Cdc42- binding kinase alpha. (PMID: 11340065) Sumi T. … Nakamura T. (J. Biol. Chem. 2001) 3 4 23
  4. The DNA sequence of human chromosome 22. (PMID: 10591208) Dunham I. … Wright H. (Nature 1999) 2 3 4
  5. LIM-kinase 2 induces formation of stress fibres, focal adhesions and membrane blebs, dependent on its activation by Rho-associated kinase-catalysed phosphorylation at threonine-505. (PMID: 11171090) Amano T. … Mizuno K. (Biochem. J. 2001) 3 23

Products for LIMK2 Gene

  • Addgene plasmids for LIMK2

Sources for LIMK2 Gene

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