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Aliases for LECT2 Gene

Aliases for LECT2 Gene

  • Leukocyte Cell-Derived Chemotaxin 2 2 3
  • Leukocyte Cell-Derived Chemotaxin-2 3
  • Chondromodulin-II 3
  • Chm-II 3
  • LECT-2 4
  • HLECT2 4
  • Chm2 3

External Ids for LECT2 Gene

Summaries for LECT2 Gene

Entrez Gene Summary for LECT2 Gene

  • This gene encodes a secreted, 16 kDa protein that acts as a chemotactic factor to neutrophils and stimulates the growth of chondrocytes and osteoblasts. This protein has high sequence similarity to the chondromodulin repeat regions of the chicken myb-induced myeloid 1 protein. A polymorphism in this gene may be associated with rheumatoid arthritis. [provided by RefSeq, Jul 2008]

GeneCards Summary for LECT2 Gene

LECT2 (Leukocyte Cell-Derived Chemotaxin 2) is a Protein Coding gene. Diseases associated with LECT2 include rheumatoid arthritis and hepatocellular carcinoma. Among its related pathways are C-MYB transcription factor network. GO annotations related to this gene include identical protein binding.

UniProtKB/Swiss-Prot for LECT2 Gene

  • Has a neutrophil chemotactic activity. Also a positive regulator of chondrocyte proliferation

Gene Wiki entry for LECT2 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LECT2 Gene

Genomics for LECT2 Gene

Genomic Location for LECT2 Gene

Start:
135,922,279 bp from pter
End:
135,955,034 bp from pter
Size:
32,756 bases
Orientation:
Minus strand

Genomic View for LECT2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for LECT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LECT2 Gene

Regulatory Elements for LECT2 Gene

Proteins for LECT2 Gene

  • Protein details for LECT2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O14960-LECT2_HUMAN
    Recommended name:
    Leukocyte cell-derived chemotaxin-2
    Protein Accession:
    O14960
    Secondary Accessions:
    • B2RA90
    • O14565
    • Q52M49

    Protein attributes for LECT2 Gene

    Size:
    151 amino acids
    Molecular mass:
    16390 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LECT2 Gene

Proteomics data for LECT2 Gene at MOPED

Post-translational modifications for LECT2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for LECT2 Gene

No data available for DME Specific Peptides for LECT2 Gene

Domains for LECT2 Gene

Protein Domains for LECT2 Gene

UniProtKB/Swiss-Prot:

LECT2_HUMAN
Family:
  • Belongs to the LECT2/MIM-1 family.:
    • O14960
genes like me logo Genes that share domains with LECT2: view

No data available for Gene Families for LECT2 Gene

Function for LECT2 Gene

Molecular function for LECT2 Gene

GENATLAS Biochemistry: leukocyte cell-derived chemotaxia 2,16kDa,specifically expressed in liver,identical to chondromodulin II,growth stimulator of bovine chondrocyte
UniProtKB/Swiss-Prot Function: Has a neutrophil chemotactic activity. Also a positive regulator of chondrocyte proliferation
UniProtKB/Swiss-Prot Induction: By phytohemagglutinin (PHA)

Gene Ontology (GO) - Molecular Function for LECT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0042802 identical protein binding IPI 23352894
genes like me logo Genes that share ontologies with LECT2: view
genes like me logo Genes that share phenotypes with LECT2: view

Animal Models for LECT2 Gene

MGI Knock Outs for LECT2:

miRNA for LECT2 Gene

miRTarBase miRNAs that target LECT2

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for LECT2 Gene

Localization for LECT2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for LECT2 Gene

Cytoplasm. Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for LECT2 Gene COMPARTMENTS Subcellular localization image for LECT2 gene
Compartment Confidence
extracellular 5
lysosome 1

Gene Ontology (GO) - Cellular Components for LECT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space TAS 9266841
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with LECT2: view

Pathways for LECT2 Gene

genes like me logo Genes that share pathways with LECT2: view

Pathways by source for LECT2 Gene

1 BioSystems pathway for LECT2 Gene

Gene Ontology (GO) - Biological Process for LECT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001501 skeletal system development TAS 9545637
GO:0006935 chemotaxis IEA --
GO:0030178 negative regulation of Wnt signaling pathway IEA --
genes like me logo Genes that share ontologies with LECT2: view

Compounds for LECT2 Gene

(3) Novoseek inferred chemical compound relationships for LECT2 Gene

Compound -log(P) Hits PubMed IDs
ornithine 36.5 2
glutamine 22.3 2
glutamate 3.26 2
genes like me logo Genes that share compounds with LECT2: view

Transcripts for LECT2 Gene

mRNA/cDNA for LECT2 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(20) Selected AceView cDNA sequences:
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for LECT2 Gene

Leukocyte cell-derived chemotaxin 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for LECT2 Gene

No ASD Table

Relevant External Links for LECT2 Gene

GeneLoc Exon Structure for
LECT2
ECgene alternative splicing isoforms for
LECT2

Expression for LECT2 Gene

mRNA expression in normal human tissues for LECT2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for LECT2 Gene

This gene is overexpressed in Liver (46.8).

SOURCE GeneReport for Unigene cluster for LECT2 Gene Hs.512580

mRNA Expression by UniProt/SwissProt for LECT2 Gene

O14960-LECT2_HUMAN
Tissue specificity: Highly expressed in adult and fetal liver and weakly in testis. Not expressed in bone marrow
genes like me logo Genes that share expressions with LECT2: view

Orthologs for LECT2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for LECT2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LECT2 36
  • 99.34 (n)
  • 99.34 (a)
LECT2 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LECT2 36
  • 85.43 (n)
  • 86.09 (a)
LECT2 37
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia LECT2 36
  • 85.87 (n)
  • 86.75 (a)
LECT2 37
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Lect2 36
  • 83.22 (n)
  • 82.78 (a)
Lect2 16
Lect2 37
  • 83 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia LECT2 37
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia LECT2 37
  • 40 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Lect2 36
  • 81.9 (n)
  • 84.11 (a)
chicken
(Gallus gallus)
Aves LECT2 36
  • 59.6 (n)
  • 53.64 (a)
LECT2 37
  • 25 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii BX005069.2 37
  • 53 (a)
OneToMany
BX005069.4 37
  • 42 (a)
OneToMany
LECT2 (4 of 4) 37
  • 36 (a)
OneToMany
lect2l 36
  • 58.85 (n)
  • 54.48 (a)
lect2l 37
  • 50 (a)
OneToMany
Species with no ortholog for LECT2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for LECT2 Gene

ENSEMBL:
Gene Tree for LECT2 (if available)
TreeFam:
Gene Tree for LECT2 (if available)

Paralogs for LECT2 Gene

No data available for Paralogs for LECT2 Gene

Variants for LECT2 Gene

Sequence variations from dbSNP and Humsavar for LECT2 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs31513 -- 135,954,420(-) CTGGT(A/G)TGGAT intron-variant
rs31514 -- 135,953,415(-) AGACC(A/G)TCCTG intron-variant
rs31515 -- 135,952,424(-) CTGGC(C/T)CAGGC intron-variant
rs31516 -- 135,952,412(-) CTGGA(C/T)GTTGA intron-variant
rs31517 - 135,951,340(-) TGGAC(A/G)TCTTG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for LECT2 Gene

Variant ID Type Subtype PubMed ID
dgv1853e1 CNV Complex 17122850
dgv6338n71 CNV Loss 21882294
nsv471050 CNV Loss 18288195

Relevant External Links for LECT2 Gene

HapMap Linkage Disequilibrium report
LECT2

Disorders for LECT2 Gene

(2) Novoseek inferred disease relationships for LECT2 Gene

Disease -log(P) Hits PubMed IDs
hepatocellular carcinoma 33.3 2
hyperplasia 14.4 2

Relevant External Links for LECT2

Genetic Association Database (GAD)
LECT2
Human Genome Epidemiology (HuGE) Navigator
LECT2
genes like me logo Genes that share disorders with LECT2: view

No data available for UniProtKB/Swiss-Prot for LECT2 Gene

Publications for LECT2 Gene

  1. Molecular cloning, structural characterization, and chromosomal mapping of the human LECT2 gene. (PMID: 9545637) Yamagoe S. … Suzuki K. (Genomics 1998) 2 3 4 23
  2. Purification and primary amino acid sequence of a novel neutrophil chemotactic factor LECT2. (PMID: 8877413) Yamagoe S. … Suzuki K. (Immunol. Lett. 1996) 3 4 23
  3. Systemic expression of a newly recognized protein, LECT2, in the human body. (PMID: 9832057) Nagai H. … Suzuki K. (Pathol. Int. 1998) 3 4 23
  4. Molecular cloning of human and bovine LECT2 having a neutrophil chemotactic activity and its specific expression in the liver. (PMID: 9524238) Yamagoe S. … Suzuki K. (Biochim. Biophys. Acta 1998) 3 4 23
  5. Expression of a neutrophil chemotactic protein LECT2 in human hepatocytes revealed by immunochemical studies using polyclonal and monoclonal antibodies to a recombinant LECT2. (PMID: 9266841) Yamagoe S. … Suzuki K. (Biochem. Biophys. Res. Commun. 1997) 3 23

Products for LECT2 Gene

Sources for LECT2 Gene

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