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Aliases for OR13J1 Gene

Aliases for OR13J1 Gene

  • Olfactory Receptor Family 13 Subfamily J Member 1 2 3 5
  • Olfactory Receptor OR9-2 3 4
  • Olfactory Receptor, Family 13, Subfamily J, Member 1 2
  • Olfactory Receptor 13J1 3
  • OR9-2 3

External Ids for OR13J1 Gene

Previous GeneCards Identifiers for OR13J1 Gene

  • GC09U990176
  • GC09M035860

Summaries for OR13J1 Gene

Entrez Gene Summary for OR13J1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR13J1 Gene

OR13J1 (Olfactory Receptor Family 13 Subfamily J Member 1) is a Protein Coding gene. Among its related pathways are Olfactory Signaling Pathway and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR2K2.

UniProtKB/Swiss-Prot for OR13J1 Gene

  • Odorant receptor.

Gene Wiki entry for OR13J1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR13J1 Gene

Genomics for OR13J1 Gene

Regulatory Elements for OR13J1 Gene

Enhancers for OR13J1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G035904 1.8 FANTOM5 Ensembl ENCODE dbSUPER 14.1 -37.6 -37567 7.4 FOXA2 SIN3A ZNF48 YY1 SLC30A9 ZNF121 GLIS2 GATA2 ZNF143 FOS HRCT1 SPAAR TMEM8B OR13J1 FAM221B NDUFA5P4 ENSG00000227388 NPR2 SPAG8 OR2S1P
GH09G035913 1.6 Ensembl ENCODE dbSUPER 10.8 -46.6 -46641 7.7 HDGF PKNOX1 ARNT ARID4B YBX1 ZBTB7B YY1 ZNF766 ZNF207 ZNF548 YBX1P10 GBA2 SPAAR RECK NDUFA5P4 OR13J1 FAM221B TMEM8B SPAG8 ENSG00000227388
GH09G035847 1 Ensembl ENCODE 12.1 +22.3 22264 2.0 PKNOX1 TBL1XR1 MAX ASH2L ARID3A POLR2A NFYB FOS ETV6 RELB TMEM8B OR13J1 NDUFA5P4 ENSG00000227388 NPR2 SPAG8 HINT2 GBA2 CREB3 TLN1
GH09G035825 1 Ensembl ENCODE 10.7 +44.1 44122 1.0 HDGF CTCF IRF3 RAD21 ZNF143 SMC3 RELB MIXL1 ZBTB20 ZNF654 ENSG00000227388 NPR2 ENSG00000228843 MSMP GBA2 RGP1 CREB3 TLN1 OR13J1 NDUFA5P4
GH09G035515 1.9 FANTOM5 Ensembl ENCODE dbSUPER 4.8 +351.5 351476 8.0 PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 BRCA1 SLC30A9 GATA2 FOS FAM166B RUSC2 OR13J1 CCDC107 ARHGEF39 CREB3 VCP STOML2 RPL36AP33 PIR61372
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OR13J1 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR13J1 Gene

Chromosome:
9
Start:
35,869,263 bp from pter
End:
35,870,601 bp from pter
Size:
1,339 bases
Orientation:
Minus strand

Genomic View for OR13J1 Gene

Genes around OR13J1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR13J1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR13J1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR13J1 Gene

Proteins for OR13J1 Gene

  • Protein details for OR13J1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGT2-O13J1_HUMAN
    Recommended name:
    Olfactory receptor 13J1
    Protein Accession:
    Q8NGT2
    Secondary Accessions:
    • B2RN66
    • Q6IF20
    • Q96R40

    Protein attributes for OR13J1 Gene

    Size:
    312 amino acids
    Molecular mass:
    34689 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR13J1 Gene

Post-translational modifications for OR13J1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for OR13J1 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR13J1 Gene

Domains & Families for OR13J1 Gene

Gene Families for OR13J1 Gene

Protein Domains for OR13J1 Gene

Suggested Antigen Peptide Sequences for OR13J1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NGT2

UniProtKB/Swiss-Prot:

O13J1_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR13J1: view

Function for OR13J1 Gene

Molecular function for OR13J1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR13J1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
genes like me logo Genes that share ontologies with OR13J1: view

Phenotypes for OR13J1 Gene

genes like me logo Genes that share phenotypes with OR13J1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR13J1 Gene

Localization for OR13J1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR13J1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR13J1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR13J1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR13J1: view

Pathways & Interactions for OR13J1 Gene

genes like me logo Genes that share pathways with OR13J1: view

Pathways by source for OR13J1 Gene

Interacting Proteins for OR13J1 Gene

Gene Ontology (GO) - Biological Process for OR13J1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IEA,IBA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR13J1: view

No data available for SIGNOR curated interactions for OR13J1 Gene

Drugs & Compounds for OR13J1 Gene

No Compound Related Data Available

Transcripts for OR13J1 Gene

mRNA/cDNA for OR13J1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OR13J1 Gene

Olfactory receptor, family 13, subfamily J, member 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR13J1 Gene

No ASD Table

Relevant External Links for OR13J1 Gene

GeneLoc Exon Structure for
OR13J1
ECgene alternative splicing isoforms for
OR13J1

Expression for OR13J1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR13J1 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR13J1 Gene:

OR13J1

SOURCE GeneReport for Unigene cluster for OR13J1 Gene:

Hs.527480

Evidence on tissue expression from TISSUES for OR13J1 Gene

  • Nervous system(4.1)
genes like me logo Genes that share expression patterns with OR13J1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR13J1 Gene

Orthologs for OR13J1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR13J1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC473225 34
  • 99.14 (n)
OR13J1 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LOC618828 34
  • 86.75 (n)
-- 35
  • 85 (a)
OneToMany
-- 35
  • 84 (a)
OneToMany
-- 35
  • 84 (a)
OneToMany
-- 35
  • 82 (a)
OneToMany
-- 35
  • 81 (a)
OneToMany
dog
(Canis familiaris)
Mammalia LOC611969 34
  • 86.75 (n)
OR13J1 35
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Or13j1 55 Olfr71 34 16 35
  • 85.47 (n)
rat
(Rattus norvegicus)
Mammalia Olr834 34
  • 85.04 (n)
oppossum
(Monodelphis domestica)
Mammalia OR13J1 35
  • 64 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 39 (a)
ManyToMany
Species where no ortholog for OR13J1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR13J1 Gene

ENSEMBL:
Gene Tree for OR13J1 (if available)
TreeFam:
Gene Tree for OR13J1 (if available)

Paralogs for OR13J1 Gene

(442) SIMAP similar genes for OR13J1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR13J1: view

Variants for OR13J1 Gene

Sequence variations from dbSNP and Humsavar for OR13J1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000097909 -- 35,869,171(+) TGATG(C/G)AATCA downstream-variant-500B
rs1001883133 -- 35,872,015(+) CTCCC(A/C)CTCTC upstream-variant-2KB
rs1002813887 -- 35,871,781(+) TCCTT(G/T)CAGGA upstream-variant-2KB
rs1002990280 -- 35,871,087(+) TGAGC(C/G)ATCGC upstream-variant-2KB
rs1004991538 -- 35,869,159(+) CAGTG(A/T)GAAGA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for OR13J1 Gene

Variant ID Type Subtype PubMed ID
nsv1125318 OTHER inversion 24896259
nsv831546 CNV loss 17160897

Variation tolerance for OR13J1 Gene

Residual Variation Intolerance Score: 42.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.55; 29.97% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR13J1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR13J1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR13J1 Gene

Disorders for OR13J1 Gene

Relevant External Links for OR13J1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR13J1

No disorders were found for OR13J1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR13J1 Gene

Publications for OR13J1 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 64
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4 64
  3. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for OR13J1 Gene

Sources for OR13J1 Gene

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