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Aliases for OR13J1 Gene

Aliases for OR13J1 Gene

  • Olfactory Receptor, Family 13, Subfamily J, Member 1 2 3
  • Olfactory Receptor OR9-2 3 4
  • Olfactory Receptor 13J1 3
  • OR9-2 3

External Ids for OR13J1 Gene

Previous GeneCards Identifiers for OR13J1 Gene

  • GC09U990176
  • GC09M035860

Summaries for OR13J1 Gene

Entrez Gene Summary for OR13J1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR13J1 Gene

OR13J1 (Olfactory Receptor, Family 13, Subfamily J, Member 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR13C7.

UniProtKB/Swiss-Prot for OR13J1 Gene

  • Odorant receptor.

Gene Wiki entry for OR13J1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR13J1 Gene

Genomics for OR13J1 Gene

Regulatory Elements for OR13J1 Gene

Genomic Location for OR13J1 Gene

Start:
35,869,263 bp from pter
End:
35,870,601 bp from pter
Size:
1,339 bases
Orientation:
Minus strand

Genomic View for OR13J1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OR13J1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR13J1 Gene

Proteins for OR13J1 Gene

  • Protein details for OR13J1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGT2-O13J1_HUMAN
    Recommended name:
    Olfactory receptor 13J1
    Protein Accession:
    Q8NGT2
    Secondary Accessions:
    • B2RN66
    • Q6IF20
    • Q96R40

    Protein attributes for OR13J1 Gene

    Size:
    312 amino acids
    Molecular mass:
    34689 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR13J1 Gene

Proteomics data for OR13J1 Gene at MOPED

Post-translational modifications for OR13J1 Gene

  • Glycosylation at Asn5 and Asn191
  • Modification sites at PhosphoSitePlus

Other Protein References for OR13J1 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR13J1 Gene

Domains for OR13J1 Gene

Gene Families for OR13J1 Gene

HGNC:
  • OR13 :GPCR / Class A : Olfactory receptors

Protein Domains for OR13J1 Gene

Suggested Antigen Peptide Sequences for OR13J1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NGT2

UniProtKB/Swiss-Prot:

O13J1_HUMAN :
  • Q8NGT2
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR13J1: view

Function for OR13J1 Gene

Molecular function for OR13J1 Gene

UniProtKB/Swiss-Prot Function: Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR13J1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
genes like me logo Genes that share ontologies with OR13J1: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OR13J1 Gene

Localization for OR13J1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR13J1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OR13J1 Gene COMPARTMENTS Subcellular localization image for OR13J1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR13J1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016021 integral component of membrane IBA --
genes like me logo Genes that share ontologies with OR13J1: view

Pathways for OR13J1 Gene

genes like me logo Genes that share pathways with OR13J1: view

Pathways by source for OR13J1 Gene

Interacting Proteins for OR13J1 Gene

Gene Ontology (GO) - Biological Process for OR13J1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IBA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR13J1: view

Transcripts for OR13J1 Gene

mRNA/cDNA for OR13J1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for OR13J1 Gene

Olfactory receptor, family 13, subfamily J, member 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for OR13J1 Gene

No ASD Table

Relevant External Links for OR13J1 Gene

GeneLoc Exon Structure for
OR13J1
ECgene alternative splicing isoforms for
OR13J1

Expression for OR13J1 Gene

mRNA expression in normal human tissues for OR13J1 Gene

SOURCE GeneReport for Unigene cluster for OR13J1 Gene Hs.527480

genes like me logo Genes that share expressions with OR13J1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for OR13J1 Gene

Orthologs for OR13J1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR13J1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC473225 35
  • 99.14 (n)
  • 98.07 (a)
OR13J1 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 84 (a)
OneToMany
-- 36
  • 85 (a)
OneToMany
-- 36
  • 82 (a)
OneToMany
-- 36
  • 84 (a)
OneToMany
-- 36
  • 81 (a)
OneToMany
LOC618828 35
  • 86.75 (n)
  • 84.94 (a)
dog
(Canis familiaris)
Mammalia LOC611969 35
  • 86.75 (n)
  • 84.62 (a)
OR13J1 36
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Olfr71 35
  • 85.47 (n)
  • 82.05 (a)
Olfr71 16
Olfr71 36
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia OR13J1 36
  • 64 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 39 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Olr834 35
  • 85.04 (n)
  • 82.05 (a)
Species with no ortholog for OR13J1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR13J1 Gene

ENSEMBL:
Gene Tree for OR13J1 (if available)
TreeFam:
Gene Tree for OR13J1 (if available)

Paralogs for OR13J1 Gene

Selected SIMAP similar genes for OR13J1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR13J1: view

Variants for OR13J1 Gene

Sequence variations from dbSNP and Humsavar for OR13J1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs4879935 -- 35,869,253(+) AGCCA(A/G)GAGGC downstream-variant-500B
rs7018960 -- 35,871,751(+) CTGGG(C/T)GGAGC upstream-variant-2KB
rs7044405 - 35,870,004(+) GCACG(C/T)GGTAC reference, missense
rs10814290 -- 35,870,940(+) AACAG(A/G)TTGTT upstream-variant-2KB
rs13283762 -- 35,872,212(+) cttcc(A/G)taccc upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for OR13J1 Gene

Variant ID Type Subtype PubMed ID
dgv8168n71 CNV Gain 21882294
nsv831546 CNV Loss 17160897

Relevant External Links for OR13J1 Gene

HapMap Linkage Disequilibrium report
OR13J1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR13J1 Gene

Disorders for OR13J1 Gene

No disorders were found for OR13J1 Gene.

No data available for UniProtKB/Swiss-Prot for OR13J1 Gene

Publications for OR13J1 Gene

  1. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3 4
  2. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4
  3. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for OR13J1 Gene

Sources for OR13J1 Gene

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