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Aliases for OR5D16 Gene

Aliases for OR5D16 Gene

  • Olfactory Receptor Family 5 Subfamily D Member 16 2 3 5
  • Olfactory Receptor OR11-154 3 4
  • Olfactory Receptor, Family 5, Subfamily D, Member 16 2
  • Olfactory Receptor 5D16 3
  • OR11-154 3

External Ids for OR5D16 Gene

Previous GeneCards Identifiers for OR5D16 Gene

  • GC11U990431
  • GC11P055382
  • GC11P055365
  • GC11P055607

Summaries for OR5D16 Gene

Entrez Gene Summary for OR5D16 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR5D16 Gene

OR5D16 (Olfactory Receptor Family 5 Subfamily D Member 16) is a Protein Coding gene. Among its related pathways are Olfactory Signaling Pathway and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and odorant binding. An important paralog of this gene is OR5D18.

UniProtKB/Swiss-Prot for OR5D16 Gene

  • Odorant receptor.

Gene Wiki entry for OR5D16 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR5D16 Gene

Genomics for OR5D16 Gene

Regulatory Elements for OR5D16 Gene

Enhancers for OR5D16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G055430 0.3 FANTOM5 6 -408.4 -408421 0.0 OR5D14 OR5D18 OR4C15 OR5L2 OR4C16 OR5D16 OR4C6 OR4S2 OR4A16 OR4C11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around OR5D16 on UCSC Golden Path with GeneCards custom track

Genomic Location for OR5D16 Gene

Chromosome:
11
Start:
55,838,752 bp from pter
End:
55,839,738 bp from pter
Size:
987 bases
Orientation:
Plus strand

Genomic View for OR5D16 Gene

Genes around OR5D16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OR5D16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OR5D16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR5D16 Gene

Proteins for OR5D16 Gene

  • Protein details for OR5D16 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NGK9-OR5DG_HUMAN
    Recommended name:
    Olfactory receptor 5D16
    Protein Accession:
    Q8NGK9
    Secondary Accessions:
    • Q6IF65
    • Q96RB4

    Protein attributes for OR5D16 Gene

    Size:
    328 amino acids
    Molecular mass:
    37278 Da
    Quaternary structure:
    No Data Available

neXtProt entry for OR5D16 Gene

Post-translational modifications for OR5D16 Gene

Other Protein References for OR5D16 Gene

ENSEMBL proteins:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR5D16 Gene

Domains & Families for OR5D16 Gene

Gene Families for OR5D16 Gene

Protein Domains for OR5D16 Gene

Suggested Antigen Peptide Sequences for OR5D16 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NGK9

UniProtKB/Swiss-Prot:

OR5DG_HUMAN :
  • Belongs to the G-protein coupled receptor 1 family.
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR5D16: view

Function for OR5D16 Gene

Molecular function for OR5D16 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR5D16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IBA --
GO:0005549 odorant binding IBA --
genes like me logo Genes that share ontologies with OR5D16: view

Phenotypes for OR5D16 Gene

MGI mutant phenotypes for OR5D16:
inferred from 1 alleles
GenomeRNAi human phenotypes for OR5D16:
genes like me logo Genes that share phenotypes with OR5D16: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OR5D16 Gene

Localization for OR5D16 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR5D16 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OR5D16 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR5D16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR5D16: view

Pathways & Interactions for OR5D16 Gene

genes like me logo Genes that share pathways with OR5D16: view

Pathways by source for OR5D16 Gene

Interacting Proteins for OR5D16 Gene

Gene Ontology (GO) - Biological Process for OR5D16 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
GO:0007186 G-protein coupled receptor signaling pathway IBA --
GO:0007608 sensory perception of smell IEA --
GO:0050896 response to stimulus IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR5D16: view

No data available for SIGNOR curated interactions for OR5D16 Gene

Transcripts for OR5D16 Gene

mRNA/cDNA for OR5D16 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OR5D16 Gene

No ASD Table

Relevant External Links for OR5D16 Gene

GeneLoc Exon Structure for
OR5D16
ECgene alternative splicing isoforms for
OR5D16

Expression for OR5D16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OR5D16 Gene

NURSA nuclear receptor signaling pathways regulating expression of OR5D16 Gene:

OR5D16

SOURCE GeneReport for Unigene cluster for OR5D16 Gene:

Hs.554527
genes like me logo Genes that share expression patterns with OR5D16: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OR5D16 Gene

Orthologs for OR5D16 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR5D16 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia OR5D18 34
  • 83.92 (n)
-- 35
  • 60 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia OR5D18 34
  • 82.42 (n)
-- 35
  • 62 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Or5d16 55 Olfr1155 35
  • 81 (a)
OneToOne
Olfr73 34 16
  • 77.49 (n)
rat
(Rattus norvegicus)
Mammalia LOC686683 34
  • 78.67 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 67 (a)
OneToMany
Species where no ortholog for OR5D16 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR5D16 Gene

ENSEMBL:
Gene Tree for OR5D16 (if available)
TreeFam:
Gene Tree for OR5D16 (if available)

Paralogs for OR5D16 Gene

Paralogs for OR5D16 Gene

(441) SIMAP similar genes for OR5D16 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR5D16: view

Variants for OR5D16 Gene

Sequence variations from dbSNP and Humsavar for OR5D16 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000166586 -- 55,839,691(+) TTCAT(A/G)TTAAA reference, missense
rs1001133544 -- 55,837,549(+) ATAAC(C/T)CCGCC upstream-variant-2KB
rs1001288259 -- 55,837,813(+) ATTCT(C/G)TATGT upstream-variant-2KB
rs1002285349 -- 55,836,954(+) GAGAT(A/G)CTGCC upstream-variant-2KB
rs1002701655 -- 55,837,256(+) TCTTA(A/C)TTATA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for OR5D16 Gene

Variant ID Type Subtype PubMed ID
dgv1204n100 CNV loss 25217958
dgv1205n100 CNV gain 25217958
dgv1905n54 CNV gain 21841781
dgv50e55 CNV loss 17911159
dgv51e55 CNV loss 17911159
esv2751030 CNV gain 17911159
esv2759828 CNV gain+loss 17122850
esv2760216 CNV loss 21179565
esv3579771 CNV gain 25503493
esv3579782 CNV gain 25503493
esv3626453 CNV loss 21293372
esv3626454 CNV gain 21293372
esv3626458 CNV gain 21293372
esv3892013 CNV gain 25118596
nsv1044174 CNV loss 25217958
nsv428256 CNV loss 18775914
nsv437717 CNV loss 16327808
nsv469885 CNV loss 16826518
nsv554801 CNV loss 21841781
nsv821668 CNV loss 15273396
nsv832158 CNV gain 17160897

Variation tolerance for OR5D16 Gene

Residual Variation Intolerance Score: 56.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.67; 65.87% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for OR5D16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OR5D16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR5D16 Gene

Disorders for OR5D16 Gene

Relevant External Links for OR5D16

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
OR5D16

No disorders were found for OR5D16 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OR5D16 Gene

Publications for OR5D16 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4 64
  2. DEFOG: a practical scheme for deciphering families of genes. (PMID: 12213199) Fuchs T. … Shamir R. (Genomics 2002) 3 4 64

Products for OR5D16 Gene

Sources for OR5D16 Gene

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