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Aliases for ABCC6 Gene

Aliases for ABCC6 Gene

  • ATP-Binding Cassette, Sub-Family C (CFTR/MRP), Member 6 2 3
  • ARA 3 4 6
  • Anthracycline Resistance-Associated Protein 3 4
  • Multi-Specific Organic Anion Transporter E 3 4
  • ATP-Binding Cassette Sub-Family C Member 6 3 4
  • MOAT-E 3 4
  • ABC34 3 6
  • GACI2 3 6
  • MLP1 3 6
  • MRP6 3 4
  • PXE 3 6
  • Multidrug Resistance-Associated Protein 6 3
  • Pseudoxanthoma Elasticum 2
  • EST349056 3
  • MOATE 3
  • PXE1 3
  • URG7 3

External Ids for ABCC6 Gene

Previous HGNC Symbols for ABCC6 Gene

  • ARA
  • PXE

Previous GeneCards Identifiers for ABCC6 Gene

  • GC16M016071
  • GC16M015526
  • GC16M016210
  • GC16M016151
  • GC16M015637

Summaries for ABCC6 Gene

Entrez Gene Summary for ABCC6 Gene

  • The protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). The encoded protein, a member of the MRP subfamily, is involved in multi-drug resistance. Mutations in this gene cause pseudoxanthoma elasticum. Alternatively spliced transcript variants that encode different proteins have been described for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for ABCC6 Gene

ABCC6 (ATP-Binding Cassette, Sub-Family C (CFTR/MRP), Member 6) is a Protein Coding gene. Diseases associated with ABCC6 include pseudoxanthoma elasticum and arterial calcification, generalized, of infancy, 2. Among its related pathways are Transport of glucose and other sugars, bile salts and organic acids, metal ions and amine compounds and ABC-family proteins mediated transport. GO annotations related to this gene include transporter activity and ATPase activity, coupled to transmembrane movement of substances. An important paralog of this gene is ABCC5.

UniProtKB/Swiss-Prot for ABCC6 Gene

  • Isoform 1: May participate directly in the active transport of drugs into subcellular organelles or influence drug distribution indirectly. Transports glutathione conjugates as leukotriene-c4 (LTC4) and N-ethylmaleimide S-glutathione (NEM-GS).

  • Isoform 2: Inhibits TNF-alpha-mediated apoptosis through blocking one or more caspases.

Gene Wiki entry for ABCC6 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ABCC6 Gene

Genomics for ABCC6 Gene

Regulatory Elements for ABCC6 Gene

Genomic Location for ABCC6 Gene

Start:
16,148,928 bp from pter
End:
16,223,522 bp from pter
Size:
74,595 bases
Orientation:
Minus strand

Genomic View for ABCC6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ABCC6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ABCC6 Gene

Proteins for ABCC6 Gene

  • Protein details for ABCC6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95255-MRP6_HUMAN
    Recommended name:
    Multidrug resistance-associated protein 6
    Protein Accession:
    O95255
    Secondary Accessions:
    • A2RRN8
    • A8KIG6
    • A8Y988
    • E7ESW8
    • P78420
    • Q8TCY8
    • Q9UMZ7

    Protein attributes for ABCC6 Gene

    Size:
    1503 amino acids
    Molecular mass:
    164906 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAC15785.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for ABCC6 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ABCC6 Gene

Proteomics data for ABCC6 Gene at MOPED

Post-translational modifications for ABCC6 Gene

  • Glycosylation at Asn15
  • Modification sites at PhosphoSitePlus

Other Protein References for ABCC6 Gene

No data available for DME Specific Peptides for ABCC6 Gene

Domains for ABCC6 Gene

Gene Families for ABCC6 Gene

HGNC:
  • ABCC :ATP binding cassette transporters / subfamily C
IUPHAR :

Graphical View of Domain Structure for InterPro Entry

O95255

UniProtKB/Swiss-Prot:

MRP6_HUMAN :
  • O95255
Domain:
  • Contains 2 ABC transmembrane type-1 domains.
  • Contains 2 ABC transporter domains.
Family:
  • Belongs to the ABC transporter superfamily. ABCC family. Conjugate transporter (TC 3.A.1.208) subfamily.
genes like me logo Genes that share domains with ABCC6: view

Function for ABCC6 Gene

Molecular function for ABCC6 Gene

GENATLAS Biochemistry: ATP binding cassette superfamily,subfamily C (CFTR/MRP),member 6,expressed in normal hematopoietic precursors
UniProtKB/Swiss-Prot Function: Isoform 1: May participate directly in the active transport of drugs into subcellular organelles or influence drug distribution indirectly. Transports glutathione conjugates as leukotriene-c4 (LTC4) and N-ethylmaleimide S-glutathione (NEM-GS).
UniProtKB/Swiss-Prot Function: Isoform 2: Inhibits TNF-alpha-mediated apoptosis through blocking one or more caspases.
UniProtKB/Swiss-Prot Induction: Isoform 2 is induced by HBV x antigen upon hepatitis B viral infection.

Gene Ontology (GO) - Molecular Function for ABCC6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005215 transporter activity TAS 8912525
GO:0005524 ATP binding IEA --
GO:0016887 ATPase activity --
GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA --
genes like me logo Genes that share ontologies with ABCC6: view
genes like me logo Genes that share phenotypes with ABCC6: view

Animal Models for ABCC6 Gene

MGI Knock Outs for ABCC6:

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for ABCC6 Gene

Localization for ABCC6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ABCC6 Gene

Isoform 1: Basolateral cell membrane; Multi-pass membrane protein.
Isoform 2: Endoplasmic reticulum membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ABCC6 Gene COMPARTMENTS Subcellular localization image for ABCC6 gene
Compartment Confidence
plasma membrane 4
extracellular 1

Gene Ontology (GO) - Cellular Components for ABCC6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0005886 plasma membrane TAS --
GO:0016020 membrane --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with ABCC6: view

Pathways for ABCC6 Gene

genes like me logo Genes that share pathways with ABCC6: view

Pathways by source for ABCC6 Gene

1 KEGG pathway for ABCC6 Gene

Interacting Proteins for ABCC6 Gene

Gene Ontology (GO) - Biological Process for ABCC6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006200 obsolete ATP catabolic process --
GO:0006810 transport TAS 8912525
GO:0007601 visual perception IEA --
GO:0008152 metabolic process IEA --
GO:0042493 response to drug TAS 8912525
genes like me logo Genes that share ontologies with ABCC6: view

Compounds for ABCC6 Gene

(10) Drugbank Compounds for ABCC6 Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
Cisplatin
  • CDDP
15663-27-1 transporter substrate
Dactinomycin
  • ActD
50-76-0 transporter substrate
Daunorubicin
20830-81-3 transporter substrate
Doxorubicin
  • Adria
23214-92-8 transporter substrate inhibitor
Etoposide
  • EPEG
33419-42-0 transporter substrate inhibitor

(9) Novoseek inferred chemical compound relationships for ABCC6 Gene

Compound -log(P) Hits PubMed IDs
benzbromarone 67.4 1
mk 571 54.7 1
probenecid 28.7 1
glucuronic acid 21.3 1
atp 19.5 7

(2) PharmGKB related drug/compound annotations for ABCC6 Gene

Drug/compound Annotation
docetaxel CA
thalidomide CA
genes like me logo Genes that share compounds with ABCC6: view

Transcripts for ABCC6 Gene

Unigene Clusters for ABCC6 Gene

ATP-binding cassette, sub-family C (CFTR/MRP), member 6:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for ABCC6

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for ABCC6
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for ABCC6 Gene

No ASD Table

Relevant External Links for ABCC6 Gene

GeneLoc Exon Structure for
ABCC6
ECgene alternative splicing isoforms for
ABCC6

Expression for ABCC6 Gene

mRNA expression in normal human tissues for ABCC6 Gene

mRNA differential expression in normal tissues according to GTEx for ABCC6 Gene

This gene is overexpressed in Liver (25.8), Kidney - Cortex (4.5), and Pancreas (4.1).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ABCC6 Gene

SOURCE GeneReport for Unigene cluster for ABCC6 Gene Hs.442182

mRNA Expression by UniProt/SwissProt for ABCC6 Gene

O95255-MRP6_HUMAN
Tissue specificity: Expressed in kidney and liver. Very low expression in other tissues
genes like me logo Genes that share expressions with ABCC6: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for ABCC6 Gene

Orthologs for ABCC6 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for ABCC6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ABCC6 35
  • 99.05 (n)
  • 98.77 (a)
ABCC6 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ABCC6 35
  • 85.61 (n)
  • 83.77 (a)
ABCC6 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ABCC6 35
  • 83.97 (n)
  • 80.44 (a)
ABCC6 36
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Abcc6 35
  • 80.94 (n)
  • 79.77 (a)
Abcc6 16
Abcc6 36
  • 79 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ABCC6 36
  • 63 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ABCC6 36
  • 63 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Abcc6 35
  • 80.81 (n)
  • 79.72 (a)
chicken
(Gallus gallus)
Aves ABCC6 35
  • 60.05 (n)
  • 54.78 (a)
ABCC6 36
  • 54 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia ABCC6 36
  • 53 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii ABCC6 36
  • 27 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea mrp-1 36
  • 35 (a)
ManyToMany
C18C4.2 37
  • 23 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YCF1 36
  • 33 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 29 (a)
ManyToMany
Species with no ortholog for ABCC6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for ABCC6 Gene

ENSEMBL:
Gene Tree for ABCC6 (if available)
TreeFam:
Gene Tree for ABCC6 (if available)

Paralogs for ABCC6 Gene

Paralogs for ABCC6 Gene

Pseudogenes.org Pseudogenes for ABCC6 Gene

genes like me logo Genes that share paralogs with ABCC6: view

Variants for ABCC6 Gene

Sequence variations from dbSNP and Humsavar for ABCC6 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs129083 -- 16,149,320(+) gcact(C/T)cagcc downstream-variant-500B
rs150465 -- 16,179,517(+) gatgg(C/T)ccggg intron-variant
rs150466 -- 16,183,107(+) CACAT(C/T)TGTGC intron-variant
rs150467 -- 16,185,191(+) GGCTT(C/G/T)TGGGT intron-variant
rs150468 -- 16,158,143(-) ACGGG(A/C)ACAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for ABCC6 Gene

Variant ID Type Subtype PubMed ID
nsv435664 CNV Deletion 17901297
esv2714015 CNV Deletion 23290073
nsv457428 CNV Gain 19166990
esv34006 CNV Loss 18971310
dgv2616n71 CNV Gain 21882294
dgv816e1 CNV Complex 17122850
dgv817e1 CNV Complex 17122850
nsv905414 CNV Loss 21882294
nsv905415 CNV Gain 21882294
nsv905417 CNV Gain 21882294
dgv2618n71 CNV Gain 21882294
nsv457437 CNV Gain 19166990
nsv469785 CNV Complex 16826518
nsv905419 CNV Gain 21882294
nsv905421 CNV Gain 21882294
nsv905423 CNV Loss 21882294
esv27065 CNV Gain 19812545
esv1081882 CNV Insertion 17803354
esv2714028 CNV Deletion 23290073
esv1100706 CNV Deletion 17803354
esv33614 CNV Gain+Loss 17666407
nsv905424 CNV Gain 21882294
nsv428319 CNV Loss 18775914

Relevant External Links for ABCC6 Gene

HapMap Linkage Disequilibrium report
ABCC6
Human Gene Mutation Database (HGMD)
ABCC6
Locus Specific Mutation Databases (LSDB)
ABCC6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ABCC6 Gene

Disorders for ABCC6 Gene

(3) OMIM Diseases for ABCC6 Gene (603234)

UniProtKB/Swiss-Prot

MRP6_HUMAN
  • Pseudoxanthoma elasticum (PXE) [MIM:264800]: A multisystem disorder characterized by accumulation of mineralized and fragmented elastic fibers in the skin, vascular walls, and Burch membrane in the eye. Clinically, patients exhibit characteristic lesions of the posterior segment of the eye including peau dorange, angioid streaks, and choroidal neovascularizations, of the skin including soft, ivory colored papules in a reticular pattern that predominantly affect the neck and large flexor surfaces, and of the cardiovascular system with peripheral and coronary arterial occlusive disease as well as gastrointestinal bleedings. {ECO:0000269 PubMed:10811882, ECO:0000269 PubMed:10835642, ECO:0000269 PubMed:10954200, ECO:0000269 PubMed:11427982, ECO:0000269 PubMed:11536079, ECO:0000269 PubMed:11702217, ECO:0000269 PubMed:15086542, ECO:0000269 PubMed:15098239, ECO:0000269 PubMed:15459974, ECO:0000269 PubMed:16086317, ECO:0000269 PubMed:17617515, ECO:0000269 PubMed:19339160, ECO:0000269 PubMed:20034067, ECO:0000269 PubMed:25615550}. Note=The disease is caused by mutations affecting the gene represented in this entry. Homozygous or compound heterozygous ABCC6 mutations have been found in the overwhelming majority of cases. Individuals carrying heterozygous mutations express limited manifestations of the pseudoxanthoma elasticum phenotype.
  • Arterial calcification of infancy, generalized, 2 (GACI2) [MIM:614473]: A severe autosomal recessive disorder characterized by calcification of the internal elastic lamina of muscular arteries and stenosis due to myointimal proliferation. The disorder is often fatal within the first 6 months of life because of myocardial ischemia resulting in refractory heart failure. {ECO:0000269 PubMed:22209248}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(15) Novoseek inferred disease relationships for ABCC6 Gene

Disease -log(P) Hits PubMed IDs
pseudoxanthoma elasticum 98.8 81
angioid streaks 90.5 4
heritable connective tissue disorder 88.2 3
genetic disorder 72.8 7
calcification 69.2 11

Relevant External Links for ABCC6

GeneTests
ABCC6
GeneReviews
ABCC6
Genetic Association Database (GAD)
ABCC6
Human Genome Epidemiology (HuGE) Navigator
ABCC6
genes like me logo Genes that share disorders with ABCC6: view

Publications for ABCC6 Gene

  1. ABCC6 gene polymorphism associated with variation in plasma lipoproteins. (PMID: 11776382) Wang J. … Hegele R.A. (J. Hum. Genet. 2001) 3 4 23 48
  2. Mutation detection in the ABCC6 gene and genotype-phenotype analysis in a large international case series affected by pseudoxanthoma elasticum. (PMID: 17617515) Pfendner E.G. … Bercovitch L.G. (J. Med. Genet. 2007) 3 4 23 48
  3. Loss of ATP-dependent transport activity in pseudoxanthoma elasticum- associated mutants of human ABCC6 (MRP6). (PMID: 11880368) Ilias A. … Varadi A. (J. Biol. Chem. 2002) 3 4 23 25
  4. Mutational analysis of the ABCC6 gene and the proximal ABCC6 gene promoter in German patients with pseudoxanthoma elasticum (PXE). (PMID: 16835894) Schulz V. … GAPtting C. (Hum. Mutat. 2006) 3 23 48
  5. Circulating P-, L- and E-selectins in pseudoxanthoma elasticum patients. (PMID: 18191640) GAPtting C. … Kleesiek K. (Clin. Biochem. 2008) 3 23 48

Products for ABCC6 Gene

Sources for ABCC6 Gene

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