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Aliases for OR6S1 Gene

Aliases for OR6S1 Gene

  • Olfactory Receptor, Family 6, Subfamily S, Member 1 2 3
  • Olfactory Receptor OR14-37 3 4
  • Olfactory Receptor 6S1 3
  • OR14-37 3
  • OR6S1Q 3

External Ids for OR6S1 Gene

Previous GeneCards Identifiers for OR6S1 Gene

  • GC14U990430
  • GC14M019099
  • GC14M020151
  • GC14M021109

Summaries for OR6S1 Gene

Entrez Gene Summary for OR6S1 Gene

  • Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

GeneCards Summary for OR6S1 Gene

OR6S1 (Olfactory Receptor, Family 6, Subfamily S, Member 1) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Signaling by GPCR. GO annotations related to this gene include G-protein coupled receptor activity and olfactory receptor activity. An important paralog of this gene is OR9A4.

UniProtKB/Swiss-Prot for OR6S1 Gene

  • Odorant receptor.

Gene Wiki entry for OR6S1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OR6S1 Gene

Genomics for OR6S1 Gene

Regulatory Elements for OR6S1 Gene

Genomic Location for OR6S1 Gene

Start:
20,640,696 bp from pter
End:
20,641,691 bp from pter
Size:
996 bases
Orientation:
Minus strand

Genomic View for OR6S1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for OR6S1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OR6S1 Gene

Proteins for OR6S1 Gene

  • Protein details for OR6S1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NH40-OR6S1_HUMAN
    Recommended name:
    Olfactory receptor 6S1
    Protein Accession:
    Q8NH40
    Secondary Accessions:
    • Q6IFJ9

    Protein attributes for OR6S1 Gene

    Size:
    331 amino acids
    Molecular mass:
    36127 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC05799.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for OR6S1 Gene

Proteomics data for OR6S1 Gene at MOPED

Post-translational modifications for OR6S1 Gene

Other Protein References for OR6S1 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:
HORDE protein sequence:

No data available for DME Specific Peptides for OR6S1 Gene

Domains for OR6S1 Gene

Gene Families for OR6S1 Gene

HGNC:
  • OR6 :GPCR / Class A : Olfactory receptors

Protein Domains for OR6S1 Gene

Suggested Antigen Peptide Sequences for OR6S1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8NH40

UniProtKB/Swiss-Prot:

OR6S1_HUMAN :
  • Q8NH40
Family:
  • Belongs to the G-protein coupled receptor 1 family.
genes like me logo Genes that share domains with OR6S1: view

Function for OR6S1 Gene

Molecular function for OR6S1 Gene

UniProtKB/Swiss-Prot Function:
Odorant receptor.

Gene Ontology (GO) - Molecular Function for OR6S1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004930 G-protein coupled receptor activity IEA --
GO:0004984 olfactory receptor activity IEA --
genes like me logo Genes that share ontologies with OR6S1: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OR6S1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for OR6S1 Gene

Localization for OR6S1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for OR6S1 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for OR6S1 Gene COMPARTMENTS Subcellular localization image for OR6S1 gene
Compartment Confidence
plasma membrane 5

Gene Ontology (GO) - Cellular Components for OR6S1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with OR6S1: view

Pathways for OR6S1 Gene

genes like me logo Genes that share pathways with OR6S1: view

Pathways by source for OR6S1 Gene

Interacting Proteins for OR6S1 Gene

Gene Ontology (GO) - Biological Process for OR6S1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007186 G-protein coupled receptor signaling pathway IEA --
GO:0050911 detection of chemical stimulus involved in sensory perception of smell IEA --
genes like me logo Genes that share ontologies with OR6S1: view

Transcripts for OR6S1 Gene

mRNA/cDNA for OR6S1 Gene

(1) REFSEQ mRNAs :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for OR6S1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for OR6S1 Gene

No ASD Table

Relevant External Links for OR6S1 Gene

GeneLoc Exon Structure for
OR6S1
ECgene alternative splicing isoforms for
OR6S1

Expression for OR6S1 Gene

mRNA expression in normal human tissues for OR6S1 Gene

SOURCE GeneReport for Unigene cluster for OR6S1 Gene Hs.513132

genes like me logo Genes that share expressions with OR6S1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for OR6S1 Gene

Orthologs for OR6S1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for OR6S1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia OR6S1 35
  • 85.8 (n)
  • 84.89 (a)
OR6S1 36
  • 85 (a)
OneToOne
dog
(Canis familiaris)
Mammalia OR6S1 35
  • 85.2 (n)
  • 86.71 (a)
OR6S1 36
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Olfr750 35
  • 81.4 (n)
  • 83.84 (a)
Olfr750 16
Olfr750 36
  • 83 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia LOC473323 35
  • 98.29 (n)
  • 97.89 (a)
OR6S1 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Olr1637 35
  • 80.56 (n)
  • 83.08 (a)
oppossum
(Monodelphis domestica)
Mammalia OR6S1 36
  • 72 (a)
OneToOne
Species with no ortholog for OR6S1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OR6S1 Gene

ENSEMBL:
Gene Tree for OR6S1 (if available)
TreeFam:
Gene Tree for OR6S1 (if available)

Paralogs for OR6S1 Gene

Paralogs for OR6S1 Gene

Selected SIMAP similar genes for OR6S1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with OR6S1: view

Variants for OR6S1 Gene

Sequence variations from dbSNP and Humsavar for OR6S1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs1986315 -- 20,642,883(+) cgggc(A/G)cagag upstream-variant-2KB
rs1986316 -- 20,643,214(+) gtttt(A/C)tcctc upstream-variant-2KB
rs2115655 -- 20,643,001(+) actaa(A/G)atagg upstream-variant-2KB
rs4601953 -- 20,643,343(+) AAGAC(A/C)CTTGG upstream-variant-2KB
rs6571326 -- 20,643,435(+) gcaca(A/G)tcttg upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for OR6S1 Gene

Variant ID Type Subtype PubMed ID
esv23438 CNV Gain+Loss 19812545
nsv901468 CNV Gain 21882294

Relevant External Links for OR6S1 Gene

HapMap Linkage Disequilibrium report
OR6S1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OR6S1 Gene

Disorders for OR6S1 Gene

No disorders were found for OR6S1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for OR6S1 Gene

Publications for OR6S1 Gene

  1. The human olfactory receptor gene family. (PMID: 14983052) Malnic B. … Buck L.B. (Proc. Natl. Acad. Sci. U.S.A. 2004) 3 4
  2. Genome-scale RNAi screen for host factors required for HIV replication. (PMID: 18976975) Zhou H. … Espeseth A.S. (Cell Host Microbe 2008) 3

Products for OR6S1 Gene

Sources for OR6S1 Gene

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