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Aliases for ID3 Gene

Aliases for ID3 Gene

  • Inhibitor Of DNA Binding 3, Dominant Negative Helix-Loop-Helix Protein 2 3
  • Class B Basic Helix-Loop-Helix Protein 25 3 4
  • ID-Like Protein Inhibitor HLH 1R21 3 4
  • Helix-Loop-Helix Protein HEIR-1 3 4
  • Inhibitor Of Differentiation 3 3 4
  • BHLHb25 3 4
  • DNA-Binding Protein Inhibitor ID-3 3
  • Inhibitor Of DNA Binding 3 4
  • HEIR-1 3
  • HEIR1 4
  • 1R21 4

External Ids for ID3 Gene

Summaries for ID3 Gene

Entrez Gene Summary for ID3 Gene

  • The protein encoded by this gene is a helix-loop-helix (HLH) protein that can form heterodimers with other HLH proteins. However, the encoded protein lacks a basic DNA-binding domain and therefore inhibits the DNA binding of any HLH protein with which it interacts. [provided by RefSeq, Aug 2011]

GeneCards Summary for ID3 Gene

ID3 (Inhibitor Of DNA Binding 3, Dominant Negative Helix-Loop-Helix Protein) is a Protein Coding gene. Among its related pathways are Adipogenesis and TGF-beta/Smad Signaling. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and transcription corepressor activity. An important paralog of this gene is ID1.

UniProtKB/Swiss-Prot for ID3 Gene

  • Transcriptional regulator (lacking a basic DNA binding domain) which negatively regulates the basic helix-loop-helix (bHLH) transcription factors by forming heterodimers and inhibiting their DNA binding and transcriptional activity. Implicated in regulating a variety of cellular processes, including cellular growth, senescence, differentiation, apoptosis, angiogenesis, and neoplastic transformation. Involved in myogenesis by inhibiting skeletal muscle and cardiac myocyte differentiation and promoting muscle precursor cells proliferation. Inhibits the binding of E2A-containing protein complexes to muscle creatine kinase E-box enhancer. Regulates the circadian clock by repressing the transcriptional activator activity of the CLOCK-ARNTL/BMAL1 heterodimer.

Gene Wiki entry for ID3 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ID3 Gene

Genomics for ID3 Gene

Genomic Location for ID3 Gene

Start:
23,557,918 bp from pter
End:
23,559,794 bp from pter
Size:
1,877 bases
Orientation:
Minus strand

Genomic View for ID3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ID3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ID3 Gene

Regulatory Elements for ID3 Gene

Proteins for ID3 Gene

  • Protein details for ID3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q02535-ID3_HUMAN
    Recommended name:
    DNA-binding protein inhibitor ID-3
    Protein Accession:
    Q02535
    Secondary Accessions:
    • A8K1T8
    • O75641

    Protein attributes for ID3 Gene

    Size:
    119 amino acids
    Molecular mass:
    12999 Da
    Quaternary structure:
    • Homodimer, and heterodimer with other HLH proteins. Interacts with COPS5 and COPS7A. Interacts with IFI204. Interacts with GATA4 and NKX2-5. Interacts with ANKRD2; both proteins cooperate in myoblast differentiation (By similarity). Interacts with CLOCK and ARNTL/BMAL1.
    SequenceCaution:
    • Sequence=CAA47360.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for ID3 Gene

neXtProt entry for ID3 Gene

Proteomics data for ID3 Gene at MOPED

Post-translational modifications for ID3 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys30

Other Protein References for ID3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for ID3 Gene

Domains for ID3 Gene

Gene Families for ID3 Gene

HGNC:
  • bHLH :Basic helix-loop-helix proteins

Protein Domains for ID3 Gene

Suggested Antigen Peptide Sequences for ID3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q02535

UniProtKB/Swiss-Prot:

ID3_HUMAN
Domain:
  • Contains 1 bHLH (basic helix-loop-helix) domain.:
    • Q02535
genes like me logo Genes that share domains with ID3: view

Function for ID3 Gene

Molecular function for ID3 Gene

GENATLAS Biochemistry: inhibitor of DNA binding 3,mouse ld-3 related,expressed during early development and in adult tissues,inhibing transcription factors of the basic helix loop helix family, required for neurogenesis and angiogenesis
UniProtKB/Swiss-Prot Function: Transcriptional regulator (lacking a basic DNA binding domain) which negatively regulates the basic helix-loop-helix (bHLH) transcription factors by forming heterodimers and inhibiting their DNA binding and transcriptional activity. Implicated in regulating a variety of cellular processes, including cellular growth, senescence, differentiation, apoptosis, angiogenesis, and neoplastic transformation. Involved in myogenesis by inhibiting skeletal muscle and cardiac myocyte differentiation and promoting muscle precursor cells proliferation. Inhibits the binding of E2A-containing protein complexes to muscle creatine kinase E-box enhancer. Regulates the circadian clock by repressing the transcriptional activator activity of the CLOCK-ARNTL/BMAL1 heterodimer.
UniProtKB/Swiss-Prot Induction: By phorbol 12-myristate 13-acetate (PMA)

Gene Ontology (GO) - Molecular Function for ID3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003700 sequence-specific DNA binding transcription factor activity IEA --
GO:0003714 transcription corepressor activity TAS 8437843
GO:0005515 protein binding IPI 20861012
GO:0008134 transcription factor binding IEA --
GO:0019904 protein domain specific binding IEA --
genes like me logo Genes that share ontologies with ID3: view
genes like me logo Genes that share phenotypes with ID3: view

Animal Models for ID3 Gene

MGI Knock Outs for ID3:

miRNA for ID3 Gene

miRTarBase miRNAs that target ID3

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for ID3 Gene

Localization for ID3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ID3 Gene

Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ID3 Gene COMPARTMENTS Subcellular localization image for ID3 gene
Compartment Confidence
nucleus 5
mitochondrion 3
cytosol 2
extracellular 2
plasma membrane 2
cytoskeleton 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for ID3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IC 14627819
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IEA --
GO:0015630 microtubule cytoskeleton IDA --
genes like me logo Genes that share ontologies with ID3: view

Pathways for ID3 Gene

genes like me logo Genes that share pathways with ID3: view

Pathways by source for ID3 Gene

2 Cell Signaling Technology pathways for ID3 Gene
2 BioSystems pathways for ID3 Gene
1 KEGG pathway for ID3 Gene

Gene Ontology (GO) - Biological Process for ID3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IEA --
GO:0001656 metanephros development IEA --
GO:0006275 regulation of DNA replication IEA --
GO:0006351 transcription, DNA-templated IEA --
GO:0007275 multicellular organismal development TAS 1628620
genes like me logo Genes that share ontologies with ID3: view

Compounds for ID3 Gene

(1) HMDB Compounds for ID3 Gene

Compound Synonyms Cas Number PubMed IDs
Creatine
  • ((amino(imino)methyl)(methyl)amino)acetate
57-00-1

(3) Novoseek inferred chemical compound relationships for ID3 Gene

Compound -log(P) Hits PubMed IDs
zinc 10.5 1
vegf 9.72 4
oxygen 0 2
genes like me logo Genes that share compounds with ID3: view

Transcripts for ID3 Gene

mRNA/cDNA for ID3 Gene

Unigene Clusters for ID3 Gene

Inhibitor of DNA binding 3, dominant negative helix-loop-helix protein:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ID3 Gene

No ASD Table

Relevant External Links for ID3 Gene

GeneLoc Exon Structure for
ID3
ECgene alternative splicing isoforms for
ID3

Expression for ID3 Gene

mRNA expression in normal human tissues for ID3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ID3 Gene

SOURCE GeneReport for Unigene cluster for ID3 Gene Hs.76884

mRNA Expression by UniProt/SwissProt for ID3 Gene

Q02535-ID3_HUMAN
Tissue specificity: Expressed abundantly in lung, kidney and adrenal gland, but not in adult brain
genes like me logo Genes that share expressions with ID3: view

No data available for mRNA differential expression in normal tissues for ID3 Gene

Orthologs for ID3 Gene

This gene was present in the common ancestor of animals.

Orthologs for ID3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ID3 35
  • 99.44 (n)
  • 99.16 (a)
ID3 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ID3 35
  • 91.6 (n)
  • 97.48 (a)
ID3 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ID3 35
  • 92.16 (n)
  • 99.16 (a)
ID3 36
  • 79 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Id3 35
  • 88.52 (n)
  • 96.64 (a)
Id3 16
Id3 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ID3 36
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia ID3 36
  • 70 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Id3 35
  • 87.96 (n)
  • 97.48 (a)
chicken
(Gallus gallus)
Aves ID3 35
  • 69.49 (n)
  • 66.95 (a)
ID3 36
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia id3 35
  • 64.04 (n)
  • 61.4 (a)
zebrafish
(Danio rerio)
Actinopterygii id3 35
  • 60.66 (n)
  • 54.05 (a)
id3 36
  • 47 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta emc 36
  • 5 (a)
OneToMany
Species with no ortholog for ID3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for ID3 Gene

ENSEMBL:
Gene Tree for ID3 (if available)
TreeFam:
Gene Tree for ID3 (if available)

Paralogs for ID3 Gene

Paralogs for ID3 Gene

Selected SIMAP similar genes for ID3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with ID3: view

Variants for ID3 Gene

Sequence variations from dbSNP and Humsavar for ID3 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs2920 -- 23,558,289(-) AGACT(A/G)AACCT utr-variant-3-prime
rs11574 - 23,559,007(-) AGCTC(A/G)CTCCG reference, missense
rs14779 -- 23,558,070(-) TGTTG(C/T)CCTGA utr-variant-3-prime
rs1018369 -- 23,560,358(+) CCCCC(A/C)CCCAA upstream-variant-2KB
rs1050096 -- 23,558,170(-) GGTCT(C/T)TTCAG utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for ID3 Gene

Variant ID Type Subtype PubMed ID
nsv834435 CNV Loss 17160897
nsv871598 CNV Loss 21882294

Relevant External Links for ID3 Gene

HapMap Linkage Disequilibrium report
ID3
Human Gene Mutation Database (HGMD)
ID3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ID3 Gene

Disorders for ID3 Gene

(7) Novoseek inferred disease relationships for ID3 Gene

Disease -log(P) Hits PubMed IDs
thyroid cancer 23.1 2
leukemia t-cell 21.2 2
tumors 15.5 10
lymphoma 12.3 2
retinoblastoma 5.26 2

Relevant External Links for ID3

Genetic Association Database (GAD)
ID3
Human Genome Epidemiology (HuGE) Navigator
ID3
genes like me logo Genes that share disorders with ID3: view

No data available for UniProtKB/Swiss-Prot for ID3 Gene

Publications for ID3 Gene

  1. Structural organisation and chromosomal mapping of the human Id-3 gene. (PMID: 7828896) Deed R.W. … Norton J.D. (Gene 1994) 3 4 23
  2. Mutually exclusive expression of a helix-loop-helix gene and N-myc in human neuroblastomas and in normal development. (PMID: 1628620) Ellmeier W. … Weith A. (EMBO J. 1992) 2 3 4
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  4. Influence of multiple genetic polymorphisms on genitourinary morbidity after carbon ion radiotherapy for prostate cancer. (PMID: 18374504) Suga T. … Imai T. (Int. J. Radiat. Oncol. Biol. Phys. 2008) 3 48
  5. Integrative predictive model of coronary artery calcification in atherosclerosis. (PMID: 19948975) McGeachie M. … Ramoni M.F. (Circulation 2009) 3 48

Products for ID3 Gene

  • Addgene plasmids for ID3

Sources for ID3 Gene

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