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Aliases for HOXA3 Gene

Aliases for HOXA3 Gene

  • Homeobox A3 2 3
  • Homeobox Protein Hox-1E 3 4
  • Homeo Box A3 2 3
  • HOX1E 3 4
  • Hox-1.5-Like Protein 3
  • Homeo Box 1E 3
  • HOX1 3

External Ids for HOXA3 Gene

Previous HGNC Symbols for HOXA3 Gene

  • HOX1E
  • HOX1

Previous GeneCards Identifiers for HOXA3 Gene

  • GC07M026788
  • GC07M026888
  • GC07M026919
  • GC07M027113
  • GC07M027026

Summaries for HOXA3 Gene

Entrez Gene Summary for HOXA3 Gene

  • In vertebrates, the genes encoding the class of transcription factors called homeobox genes are found in clusters named A, B, C, and D on four separate chromosomes. Expression of these proteins is spatially and temporally regulated during embryonic development. This gene is part of the A cluster on chromosome 7 and encodes a DNA-binding transcription factor which may regulate gene expression, morphogenesis, and differentiation. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for HOXA3 Gene

HOXA3 (Homeobox A3) is a Protein Coding gene. Diseases associated with HOXA3 include thyroid hemiagenesis. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding and HMG box domain binding. An important paralog of this gene is EVX1.

UniProtKB/Swiss-Prot for HOXA3 Gene

  • Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis

Gene Wiki entry for HOXA3 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for HOXA3 Gene

Genomics for HOXA3 Gene

Regulatory Elements for HOXA3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for HOXA3 Gene

Chromosome:
7
Start:
27,106,184 bp from pter
End:
27,152,581 bp from pter
Size:
46,398 bases
Orientation:
Minus strand

Genomic View for HOXA3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for HOXA3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for HOXA3 Gene

Proteins for HOXA3 Gene

  • Protein details for HOXA3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O43365-HXA3_HUMAN
    Recommended name:
    Homeobox protein Hox-A3
    Protein Accession:
    O43365
    Secondary Accessions:
    • A4D181

    Protein attributes for HOXA3 Gene

    Size:
    443 amino acids
    Molecular mass:
    46369 Da
    Quaternary structure:
    No Data Available

neXtProt entry for HOXA3 Gene

Proteomics data for HOXA3 Gene at MOPED

Post-translational modifications for HOXA3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for HOXA3 Gene

No data available for DME Specific Peptides for HOXA3 Gene

Domains & Families for HOXA3 Gene

Gene Families for HOXA3 Gene

Suggested Antigen Peptide Sequences for HOXA3 Gene

Graphical View of Domain Structure for InterPro Entry

O43365

UniProtKB/Swiss-Prot:

HXA3_HUMAN :
  • Contains 1 homeobox DNA-binding domain.
  • Belongs to the Antp homeobox family.
Domain:
  • Contains 1 homeobox DNA-binding domain.
Family:
  • Belongs to the Antp homeobox family.
genes like me logo Genes that share domains with HOXA3: view

Function for HOXA3 Gene

Molecular function for HOXA3 Gene

GENATLAS Biochemistry:
homeo box A3(1E),homologous to mouse Hox-1.5,Drosophila Zen1,Zen2
UniProtKB/Swiss-Prot Function:
Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis

Gene Ontology (GO) - Molecular Function for HOXA3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding --
GO:0003700 transcription factor activity, sequence-specific DNA binding IEA --
GO:0005515 protein binding IPI 21516116
GO:0043565 sequence-specific DNA binding IEA --
GO:0071837 HMG box domain binding IEA --
genes like me logo Genes that share ontologies with HOXA3: view
genes like me logo Genes that share phenotypes with HOXA3: view

Animal Models for HOXA3 Gene

MGI Knock Outs for HOXA3:

Animal Model Products

Transcription Factor Targets for HOXA3 Gene

Selected GeneGlobe predicted Target genes for HOXA3

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HOXA3

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) and HOMER Transcription for HOXA3 Gene

Localization for HOXA3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for HOXA3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for HOXA3 Gene COMPARTMENTS Subcellular localization image for HOXA3 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for HOXA3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with HOXA3: view

Pathways & Interactions for HOXA3 Gene

SuperPathways for HOXA3 Gene

No Data Available

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays
    • Molecular Toxicology PathwayFinder 384HT in human,mouse,rat
    • Stem Cell Transcription Factors in human,mouse,rat

Gene Ontology (GO) - Biological Process for HOXA3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001525 angiogenesis IEP 17972163
GO:0001974 blood vessel remodeling IEA --
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0008284 positive regulation of cell proliferation IEA --
genes like me logo Genes that share ontologies with HOXA3: view

No data available for Pathways by source and SIGNOR curated interactions for HOXA3 Gene

Drugs & Compounds for HOXA3 Gene

(1) Additional Compounds for HOXA3 Gene - From: NovoSeek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
retinoic acid
302-79-4
genes like me logo Genes that share compounds with HOXA3: view

Transcripts for HOXA3 Gene

Unigene Clusters for HOXA3 Gene

Homeobox A3:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for HOXA3

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for HOXA3 Gene

No ASD Table

Relevant External Links for HOXA3 Gene

GeneLoc Exon Structure for
HOXA3
ECgene alternative splicing isoforms for
HOXA3

Expression for HOXA3 Gene

mRNA expression in normal human tissues for HOXA3 Gene

mRNA differential expression in normal tissues according to GTEx for HOXA3 Gene

This gene is overexpressed in Fallopian Tube (x4.3).

Protein differential expression in normal tissues from HIPED for HOXA3 Gene

This gene is overexpressed in Heart (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for HOXA3 Gene



SOURCE GeneReport for Unigene cluster for HOXA3 Gene Hs.659337

genes like me logo Genes that share expression patterns with HOXA3: view

Protein tissue co-expression partners for HOXA3 Gene

- Elite partner

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for HOXA3 Gene

Orthologs for HOXA3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for HOXA3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia HOXA3 35
  • 88.08 (n)
  • 92.76 (a)
HOXA3 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia HOXA3 35
  • 90.25 (n)
  • 93.42 (a)
HOXA3 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Hoxa3 35
  • 88.84 (n)
  • 93.89 (a)
Hoxa3 16
Hoxa3 36
  • 94 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia HOXA3 35
  • 99.62 (n)
  • 99.1 (a)
HOXA3 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Hoxa3 35
  • 88.49 (n)
  • 92.55 (a)
oppossum
(Monodelphis domestica)
Mammalia HOXA3 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia HOXA3 36
  • 70 (a)
OneToOne
chicken
(Gallus gallus)
Aves HOXA3 35
  • 76.27 (n)
  • 81.11 (a)
HOXA3 36
  • 80 (a)
OneToMany
HOXA3 36
  • 80 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia HOXA3 36
  • 73 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia hoxa3 35
  • 70.62 (n)
  • 72.73 (a)
African clawed frog
(Xenopus laevis)
Amphibia hoxa3a-prov 35
zebrafish
(Danio rerio)
Actinopterygii hoxa3a 35
  • 63.43 (n)
  • 64.19 (a)
hoxa3a 36
  • 60 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 19 (a)
OneToMany
Species with no ortholog for HOXA3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for HOXA3 Gene

ENSEMBL:
Gene Tree for HOXA3 (if available)
TreeFam:
Gene Tree for HOXA3 (if available)

Paralogs for HOXA3 Gene

(5) SIMAP similar genes for HOXA3 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with HOXA3: view

Variants for HOXA3 Gene

Sequence variations from dbSNP and Humsavar for HOXA3 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs739734 -- 27,119,786(+) GTTGT(C/T)CAAAT upstream-variant-2KB, intron-variant
rs1548497 -- 27,134,697(+) TTCAA(A/G)CTCTT intron-variant
rs1978133 -- 27,107,188(+) TATTG(C/T)ATCGT utr-variant-3-prime
rs1989935 -- 27,106,519(+) TCCCC(A/G)GAGGA utr-variant-3-prime
rs2428433 -- 27,105,898(+) TTCTG(C/T)CTCTG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for HOXA3 Gene

Variant ID Type Subtype PubMed ID
nsv7393 OTHER Inversion 18451855
nsv887856 CNV Loss 21882294
dgv1094n67 CNV Gain 20364138
dgv7231n71 CNV Loss 21882294
dgv7232n71 CNV Loss 21882294
dgv7233n71 CNV Loss 21882294
dgv7234n71 CNV Loss 21882294
nsv887870 CNV Loss 21882294
dgv7235n71 CNV Loss 21882294
nsv5674 CNV Loss 18451855

Variation tolerance for HOXA3 Gene

Residual Variation Intolerance Score: 25.31% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.94; 35.99% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for HOXA3 Gene

HapMap Linkage Disequilibrium report
HOXA3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for HOXA3 Gene

Disorders for HOXA3 Gene

MalaCards: The human disease database

(1) MalaCards diseases for HOXA3 Gene - From: GeneCards

Disorder Aliases PubMed IDs
thyroid hemiagenesis
- elite association
Search HOXA3 in MalaCards View complete list of genes associated with diseases

Relevant External Links for HOXA3

Genetic Association Database (GAD)
HOXA3
Human Genome Epidemiology (HuGE) Navigator
HOXA3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
HOXA3
genes like me logo Genes that share disorders with HOXA3: view

No data available for UniProtKB/Swiss-Prot and Genatlas for HOXA3 Gene

Publications for HOXA3 Gene

  1. Hoxa3 and signaling molecules involved in aortic arch patterning and remodeling. (PMID: 19290546) Kameda Y. (Cell Tissue Res. 2009) 23 67
  2. Age-related differences in expression of signal differentiation factors for human thymic epithelial cells. (PMID: 18399289) Polyakova V.O. … Knyazkin I.V. (Bull. Exp. Biol. Med. 2007) 23 67
  3. Patterning the neural crest derivatives during development of the vertebrate head: insights from avian studies. (PMID: 16313387) Creuzet S. … Le Douarin N.M. (J. Anat. 2005) 23 67
  4. Somatic motoneurone specification in the hindbrain: the influence of somite-derived signals, retinoic acid and Hoxa3. (PMID: 12756180) Guidato S. … Guthrie S. (Development 2003) 23 67
  5. Hox3 genes coordinate mechanisms of genetic suppression and activation in the generation of branchial and somatic motoneurons. (PMID: 12954718) Gaufo G.O. … Capecchi M.R. (Development 2003) 23 67

Products for HOXA3 Gene

Sources for HOXA3 Gene

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