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Aliases for TRPM5 Gene

Aliases for TRPM5 Gene

  • Transient Receptor Potential Cation Channel, Subfamily M, Member 5 2 3
  • MTR1 3 4 6
  • Long Transient Receptor Potential Channel 5 3 4
  • MLSN1- And TRP-Related Gene 1 Protein 3 4
  • LTrpC-5 3 4
  • LTRPC5 3 4
  • Transient Receptor Potential Cation Channel Subfamily M Member 5 3
  • MLSN1 And TRP-Related 3

External Ids for TRPM5 Gene

Previous GeneCards Identifiers for TRPM5 Gene

  • GC11M002487
  • GC11M002626
  • GC11M002385
  • GC11M002390
  • GC11M002382
  • GC11M002216

Summaries for TRPM5 Gene

Entrez Gene Summary for TRPM5 Gene

  • This gene encodes a member of the transient receptor potential (TRP) protein family, which is a diverse group of proteins with structural features typical of ion channels. This protein plays an important role in taste transduction, and has characteristics of a calcium-activated, non-selective cation channel that carries Na+, K+, and Cs+ ions equally well, but not Ca(2+) ions. It is activated by lower concentrations of intracellular Ca(2+), and inhibited by higher concentrations. It is also a highly temperature-sensitive, heat activated channel showing a steep increase of inward currents at temperatures between 15 and 35 degrees Celsius. This gene is located within the Beckwith-Wiedemann syndrome critical region-1 on chromosome 11p15.5, and has been shown to be imprinted, with exclusive expression from the paternal allele. [provided by RefSeq, Oct 2010]

GeneCards Summary for TRPM5 Gene

TRPM5 (Transient Receptor Potential Cation Channel, Subfamily M, Member 5) is a Protein Coding gene. Diseases associated with TRPM5 include beckwith-wiedemann syndrome. Among its related pathways are CREB Pathway and Ion channel transport. GO annotations related to this gene include potassium channel activity and ion channel activity. An important paralog of this gene is TRPM1.

UniProtKB/Swiss-Prot for TRPM5 Gene

  • Voltage-modulated Ca(2+)-activated, monovalent cation channel (VCAM) that mediates a transient membrane depolarization and plays a central role in taste transduction. Monovalent-specific, non-selective cation channel that mediates the transport of Na(+), K(+) and Cs(+) ions equally well. Activated directly by increases in intracellular Ca(2+), but is impermeable to it. Gating is voltage-dependent and displays rapid activation and deactivation kinetics upon channel stimulation even during sustained elevations in Ca(2+). Also activated by a fast intracellular Ca(2+) increase in response to inositol 1,4,5-triphosphate-producing receptor agonists. The channel is blocked by extracellular acidification. External acidification has 2 effects, a fast reversible block of the current and a slower irreversible enhancement of current inactivation. Is a highly temperature-sensitive, heat activated channel showing a steep increase of inward currents at temperatures between 15 and 35 degrees Celsius. Heat activation is due to a shift of the voltage-dependent activation curve to negative potentials. Activated by arachidonic acid in vitro. May be involved in perception of bitter, sweet and umami tastes. May also be involved in sensing semiochemicals.

Gene Wiki entry for TRPM5 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TRPM5 Gene

Genomics for TRPM5 Gene

Regulatory Elements for TRPM5 Gene

Genomic Location for TRPM5 Gene

Start:
2,404,515 bp from pter
End:
2,423,402 bp from pter
Size:
18,888 bases
Orientation:
Minus strand

Genomic View for TRPM5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TRPM5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TRPM5 Gene

Proteins for TRPM5 Gene

  • Protein details for TRPM5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NZQ8-TRPM5_HUMAN
    Recommended name:
    Transient receptor potential cation channel subfamily M member 5
    Protein Accession:
    Q9NZQ8
    Secondary Accessions:
    • A6NHS0
    • Q52LU2
    • Q9NY34

    Protein attributes for TRPM5 Gene

    Size:
    1165 amino acids
    Molecular mass:
    131451 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for TRPM5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TRPM5 Gene

Proteomics data for TRPM5 Gene at MOPED

Post-translational modifications for TRPM5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TRPM5 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for TRPM5 Gene

Domains for TRPM5 Gene

Gene Families for TRPM5 Gene

HGNC:
  • TRP :Voltage-gated ion channels / Transient receptor potential cation channels
IUPHAR :

Protein Domains for TRPM5 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TRPM5 Gene

Graphical View of Domain Structure for InterPro Entry

Q9NZQ8

UniProtKB/Swiss-Prot:

TRPM5_HUMAN :
  • Q9NZQ8
Family:
  • Belongs to the transient receptor (TC 1.A.4) family. LTrpC subfamily. TRPM5 sub-subfamily.
genes like me logo Genes that share domains with TRPM5: view

Function for TRPM5 Gene

Molecular function for TRPM5 Gene

UniProtKB/Swiss-Prot Function: Voltage-modulated Ca(2+)-activated, monovalent cation channel (VCAM) that mediates a transient membrane depolarization and plays a central role in taste transduction. Monovalent-specific, non-selective cation channel that mediates the transport of Na(+), K(+) and Cs(+) ions equally well. Activated directly by increases in intracellular Ca(2+), but is impermeable to it. Gating is voltage-dependent and displays rapid activation and deactivation kinetics upon channel stimulation even during sustained elevations in Ca(2+). Also activated by a fast intracellular Ca(2+) increase in response to inositol 1,4,5-triphosphate-producing receptor agonists. The channel is blocked by extracellular acidification. External acidification has 2 effects, a fast reversible block of the current and a slower irreversible enhancement of current inactivation. Is a highly temperature-sensitive, heat activated channel showing a steep increase of inward currents at temperatures between 15 and 35 degrees Celsius. Heat activation is due to a shift of the voltage-dependent activation curve to negative potentials. Activated by arachidonic acid in vitro. May be involved in perception of bitter, sweet and umami tastes. May also be involved in sensing semiochemicals.

Gene Ontology (GO) - Molecular Function for TRPM5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005216 ion channel activity TAS 10607831
GO:0005227 calcium activated cation channel activity IEA --
GO:0005244 voltage-gated ion channel activity IEA --
GO:0005267 potassium channel activity IEA --
GO:0005272 sodium channel activity IEA --
genes like me logo Genes that share ontologies with TRPM5: view
genes like me logo Genes that share phenotypes with TRPM5: view

Animal Models for TRPM5 Gene

MGI Knock Outs for TRPM5:

Animal Model Products

CRISPR Products

miRNA for TRPM5 Gene

miRTarBase miRNAs that target TRPM5

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TRPM5

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for TRPM5 Gene

Localization for TRPM5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TRPM5 Gene

Cell membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TRPM5 Gene COMPARTMENTS Subcellular localization image for TRPM5 gene
Compartment Confidence
plasma membrane 5
endoplasmic reticulum 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for TRPM5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane TAS --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TRPM5: view

Pathways for TRPM5 Gene

genes like me logo Genes that share pathways with TRPM5: view

Pathways by source for TRPM5 Gene

1 KEGG pathway for TRPM5 Gene

Interacting Proteins for TRPM5 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000155858%0d%0a9606.ENSP00000363435%0d%0a
Selected Interacting proteins: ENSP00000155858 for TRPM5 Gene via STRING

Symbol External ID(s) Details
ITPR3

Gene Ontology (GO) - Biological Process for TRPM5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0034220 ion transmembrane transport TAS --
GO:0034765 regulation of ion transmembrane transport IEA --
GO:0035725 sodium ion transmembrane transport IEA --
GO:0050909 sensory perception of taste IEA --
GO:0055085 transmembrane transport TAS --
genes like me logo Genes that share ontologies with TRPM5: view

Compounds for TRPM5 Gene

(4) IUPHAR Ligand for TRPM5 Gene

Ligand Type Action Affinity Pubmed IDs
H+ (extracellular) Activator None 5.4
spermine Channel blocker None 4.43
Ca2+ Antagonist Antagonist
rosiglitazone Channel blocker None
genes like me logo Genes that share compounds with TRPM5: view

Transcripts for TRPM5 Gene

mRNA/cDNA for TRPM5 Gene

(11) Selected AceView cDNA sequences:
(6) Additional mRNA sequences :
(2) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TRPM5 Gene

Transient receptor potential cation channel, subfamily M, member 5:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TRPM5

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TRPM5 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24
SP1:
SP2:

Relevant External Links for TRPM5 Gene

GeneLoc Exon Structure for
TRPM5
ECgene alternative splicing isoforms for
TRPM5

Expression for TRPM5 Gene

mRNA expression in normal human tissues for TRPM5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TRPM5 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (12.0), Colon - Transverse (9.6), Pancreas (8.2), and Thyroid (4.9).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for TRPM5 Gene

SOURCE GeneReport for Unigene cluster for TRPM5 Gene Hs.272287

mRNA Expression by UniProt/SwissProt for TRPM5 Gene

Q9NZQ8-TRPM5_HUMAN
Tissue specificity: Strongly expressed in fetal brain, liver and kidney, and in adult prostate, testis, ovary, colon and peripheral blood leukocytes. Also expressed in a large proportion of Wilms tumors and rhabdomyosarcomas. In monochromosomal cell lines shows exclusive paternal expression.
genes like me logo Genes that share expressions with TRPM5: view

In Situ Assay Products

Orthologs for TRPM5 Gene

This gene was present in the common ancestor of animals.

Orthologs for TRPM5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TRPM5 35
  • 98.04 (n)
  • 97.43 (a)
TRPM5 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TRPM5 35
  • 84.66 (n)
  • 82.96 (a)
TRPM5 36
  • 82 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TRPM5 35
  • 86.81 (n)
  • 84.55 (a)
TRPM5 36
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Trpm5 35
  • 82.54 (n)
  • 85.02 (a)
Trpm5 16
Trpm5 36
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TRPM5 36
  • 70 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Trpm5 35
  • 82.37 (n)
  • 83.81 (a)
chicken
(Gallus gallus)
Aves TRPM5 35
  • 65.47 (n)
  • 67.86 (a)
TRPM5 36
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 65 (a)
OneToMany
-- 36
  • 65 (a)
OneToMany
African clawed frog
(Xenopus laevis)
Amphibia Xl.13379 35
zebrafish
(Danio rerio)
Actinopterygii trpm5 35
  • 64.19 (n)
  • 61.32 (a)
trpm5 36
  • 57 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta trpm 36
  • 15 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea gon-2 36
  • 15 (a)
ManyToMany
gtl-1 36
  • 16 (a)
ManyToMany
gtl-2 36
  • 19 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 32 (a)
OneToMany
Species with no ortholog for TRPM5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for TRPM5 Gene

ENSEMBL:
Gene Tree for TRPM5 (if available)
TreeFam:
Gene Tree for TRPM5 (if available)

Paralogs for TRPM5 Gene

Paralogs for TRPM5 Gene

Selected SIMAP similar genes for TRPM5 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with TRPM5: view

Variants for TRPM5 Gene

Sequence variations from dbSNP and Humsavar for TRPM5 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs753135 -- 2,418,878(+) AGCCC(C/T)ACAGG intron-variant
rs753136 -- 2,418,889(+) TGCAC(C/T)GCCAC intron-variant
rs753137 -- 2,418,993(+) GAAGA(A/G)GTACA intron-variant
rs753138 -- 2,419,046(+) TGAGA(C/T)GTCTA intron-variant
rs757088 -- 2,419,519(+) GCTGA(A/G)GCAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TRPM5 Gene

Variant ID Type Subtype PubMed ID
nsv467645 CNV Gain 19166990
nsv896806 CNV Loss 21882294
nsv469928 CNV Loss 18288195
dgv1000n71 CNV Loss 21882294
nsv896811 CNV Loss 21882294
nsv896812 CNV Loss 21882294
nsv509382 CNV Insertion 20534489
nsv896820 CNV Loss 21882294
nsv896821 CNV Loss 21882294
esv2744007 CNV Deletion 23290073
esv25890 CNV Gain 19812545
dgv189n67 CNV Gain 20364138
nsv825714 CNV Gain 20364138

Relevant External Links for TRPM5 Gene

HapMap Linkage Disequilibrium report
TRPM5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TRPM5 Gene

Disorders for TRPM5 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for TRPM5 Gene including...

Search for TRPM5 Gene in MalaCards »

Relevant External Links for TRPM5

Genetic Association Database (GAD)
TRPM5
Human Genome Epidemiology (HuGE) Navigator
TRPM5
genes like me logo Genes that share disorders with TRPM5: view

No data available for UniProtKB/Swiss-Prot for TRPM5 Gene

Publications for TRPM5 Gene

  1. Identification and characterization of MTR1, a novel gene with homology to melastatin (MLSN1) and the trp gene family located in the BWS-WT2 critical region on chromosome 11p15.5 and showing allele- specific expression. (PMID: 10607831) Prawitt D. … Zabel B. (Hum. Mol. Genet. 2000) 2 3 4
  2. TRPM5 is a transient Ca2+-activated cation channel responding to rapid changes in [Ca2+]i. (PMID: 14634208) Prawitt D. … Penner R. (Proc. Natl. Acad. Sci. U.S.A. 2003) 3 4
  3. International Union of Pharmacology. XLIX. Nomenclature and structure-function relationships of transient receptor potential channels. (PMID: 16382100) Clapham D.E. … Schultz G. (Pharmacol. Rev. 2005) 2 3
  4. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PMID: 19773279) Hosgood H.D. … Lan Q. (Occup Environ Med 2009) 3 48
  5. Association between common variation in genes encoding sweet taste signaling components and human sucrose perception. (PMID: 20660057) Fushan A.A. … Drayna D. (Chem. Senses 2010) 3

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