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Aliases for GTF2H1 Gene

Aliases for GTF2H1 Gene

  • General Transcription Factor IIH, Polypeptide 1, 62kDa 2 3
  • TFIIH Basal Transcription Factor Complex P62 Subunit 3 4
  • General Transcription Factor IIH Polypeptide 1 3 4
  • Basic Transcription Factor 2 62 KDa Subunit 3 4
  • BTF2 P62 3 4
  • BTF2 3 4
  • General Transcription Factor IIH, Polypeptide 1 (62kD Subunit) 2
  • General Transcription Factor IIH Subunit 1 3
  • TFIIH 3
  • TFB1 3
  • P62 3

External Ids for GTF2H1 Gene

Summaries for GTF2H1 Gene

GeneCards Summary for GTF2H1 Gene

GTF2H1 (General Transcription Factor IIH, Polypeptide 1, 62kDa) is a Protein Coding gene. Diseases associated with GTF2H1 include rift valley fever and xeroderma pigmentosum, group c. Among its related pathways are Disease and GPCR Pathway. GO annotations related to this gene include protein kinase activity and RNA polymerase II carboxy-terminal domain kinase activity.

UniProtKB/Swiss-Prot for GTF2H1 Gene

  • Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II

Gene Wiki entry for GTF2H1 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GTF2H1 Gene

Genomics for GTF2H1 Gene

Genomic Location for GTF2H1 Gene

Start:
18,322,269 bp from pter
End:
18,367,044 bp from pter
Size:
44,776 bases
Orientation:
Plus strand

Genomic View for GTF2H1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GTF2H1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GTF2H1 Gene

Regulatory Elements for GTF2H1 Gene

Proteins for GTF2H1 Gene

  • Protein details for GTF2H1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P32780-TF2H1_HUMAN
    Recommended name:
    General transcription factor IIH subunit 1
    Protein Accession:
    P32780
    Secondary Accessions:
    • B3KXE0
    • D3DQY2
    • Q6I9Y7
    • Q9H5K5
    • Q9NQD9

    Protein attributes for GTF2H1 Gene

    Size:
    548 amino acids
    Molecular mass:
    62032 Da
    Quaternary structure:
    • One of the 6 subunits forming the core-TFIIH basal transcription factor which associates with the CAK complex composed of CDK7, CCNH/cyclin H and MNAT1 to form the TFIIH basal transcription factor. Interacts with PUF60.

    Three dimensional structures from OCA and Proteopedia for GTF2H1 Gene

    Alternative splice isoforms for GTF2H1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GTF2H1 Gene

Proteomics data for GTF2H1 Gene at MOPED

Post-translational modifications for GTF2H1 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys93 and Lys218

Other Protein References for GTF2H1 Gene

No data available for DME Specific Peptides for GTF2H1 Gene

Domains for GTF2H1 Gene

Gene Families for GTF2H1 Gene

HGNC:
  • TFIIH :General transcription factor IIH complex subunits
  • GTF :General transcription factors

Protein Domains for GTF2H1 Gene

Graphical View of Domain Structure for InterPro Entry

P32780

UniProtKB/Swiss-Prot:

TF2H1_HUMAN
Domain:
  • Contains 2 BSD domains.:
    • P32780
genes like me logo Genes that share domains with GTF2H1: view

Function for GTF2H1 Gene

Molecular function for GTF2H1 Gene

GENATLAS Biochemistry: general transcription factor IIH,polypeptide 1 (62kDa),overexpressed in testis
UniProtKB/Swiss-Prot Function: Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA and, when complexed to CAK, in RNA transcription by RNA polymerase II

Gene Ontology (GO) - Molecular Function for GTF2H1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004672 contributes_to protein kinase activity IDA 9852112
GO:0005515 protein binding IPI 10734143
GO:0008094 contributes_to DNA-dependent ATPase activity IDA 9852112
GO:0008353 contributes_to RNA polymerase II carboxy-terminal domain kinase activity IDA 9852112
genes like me logo Genes that share ontologies with GTF2H1: view

Phenotypes for GTF2H1 Gene

GenomeRNAi human phenotypes for GTF2H1:
genes like me logo Genes that share phenotypes with GTF2H1: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for GTF2H1 Gene

Localization for GTF2H1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GTF2H1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GTF2H1 Gene COMPARTMENTS Subcellular localization image for GTF2H1 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for GTF2H1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000439 core TFIIH complex IEA --
GO:0005634 nucleus --
GO:0005654 nucleoplasm TAS --
GO:0005675 holo TFIIH complex IDA 9852112
genes like me logo Genes that share ontologies with GTF2H1: view

Pathways for GTF2H1 Gene

SuperPathways for GTF2H1 Gene

Superpath Contained pathways
1 Formation of RNA Pol II elongation complex
2 Assembly of RNA Polymerase-II Initiation Complex
3 DNA Repair
4 Global Genomic NER (GG-NER)
5 RNA Polymerase I Promoter Opening
genes like me logo Genes that share pathways with GTF2H1: view

Gene Ontology (GO) - Biological Process for GTF2H1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity TAS 7533895
GO:0000718 nucleotide-excision repair, DNA damage removal TAS --
GO:0006200 obsolete ATP catabolic process --
GO:0006281 DNA repair TAS --
GO:0006283 transcription-coupled nucleotide-excision repair TAS --
genes like me logo Genes that share ontologies with GTF2H1: view

Transcripts for GTF2H1 Gene

Unigene Clusters for GTF2H1 Gene

General transcription factor IIH, polypeptide 1, 62kDa:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for GTF2H1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8a · 8b · 8c ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b ^ 14a · 14b ^ 15a ·
SP1: - - - - - - -
SP2: - - - - - - - -
SP3: - - - - - - - - - -
SP4: - - -
SP5: -
SP6: -
SP7: - - - -
SP8: - - - - - - -
SP9:
SP10: - -
SP11:
SP12: - - -
SP13:

ExUns: 15b · 15c ^ 16a · 16b ^ 17 ^ 18a · 18b · 18c ^ 19
SP1: - -
SP2: - -
SP3: - -
SP4: - -
SP5:
SP6: - -
SP7:
SP8:
SP9: -
SP10:
SP11:
SP12:
SP13:

Relevant External Links for GTF2H1 Gene

GeneLoc Exon Structure for
GTF2H1
ECgene alternative splicing isoforms for
GTF2H1

Expression for GTF2H1 Gene

mRNA expression in normal human tissues for GTF2H1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for GTF2H1 Gene

SOURCE GeneReport for Unigene cluster for GTF2H1 Gene Hs.577202

genes like me logo Genes that share expressions with GTF2H1: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for GTF2H1 Gene

Orthologs for GTF2H1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for GTF2H1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia GTF2H1 35
  • 99.76 (n)
  • 99.64 (a)
GTF2H1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia GTF2H1 35
  • 94 (n)
  • 97.51 (a)
GTF2H1 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GTF2H1 35
  • 94.28 (n)
  • 98.18 (a)
GTF2H1 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gtf2h1 35
  • 91.77 (n)
  • 97.26 (a)
Gtf2h1 16
Gtf2h1 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia GTF2H1 36
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia GTF2H1 36
  • 89 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gtf2h1 35
  • 91.54 (n)
  • 96.9 (a)
chicken
(Gallus gallus)
Aves GTF2H1 35
  • 84.58 (n)
  • 89.58 (a)
GTF2H1 36
  • 89 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GTF2H1 36
  • 86 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia gtf2h1-prov 35
tropical clawed frog
(Silurana tropicalis)
Amphibia gtf2h1 35
  • 75.69 (n)
  • 84.1 (a)
Str.597 35
zebrafish
(Danio rerio)
Actinopterygii gtf2h1 35
  • 70.5 (n)
  • 77.01 (a)
gtf2h1 36
  • 76 (a)
OneToMany
gtf2h1 36
  • 75 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP011110 35
  • 49.75 (n)
  • 48.13 (a)
fruit fly
(Drosophila melanogaster)
Insecta Tfb1 35
  • 52.21 (n)
  • 49.72 (a)
Tfb1 36
  • 45 (a)
OneToOne
Tfb1 37
  • 44 (a)
worm
(Caenorhabditis elegans)
Secernentea CELE_R02D3.3 35
  • 46.95 (n)
  • 34.7 (a)
R02D3.3 36
  • 30 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes TFB1 36
  • 16 (a)
OneToOne
TFB1 38
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G61420 35
  • 44.02 (n)
  • 30.26 (a)
rice
(Oryza sativa)
Liliopsida Os08g0338200 35
  • 43.29 (n)
  • 30.37 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2806 36
  • 46 (a)
OneToOne
Species with no ortholog for GTF2H1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for GTF2H1 Gene

ENSEMBL:
Gene Tree for GTF2H1 (if available)
TreeFam:
Gene Tree for GTF2H1 (if available)

Paralogs for GTF2H1 Gene

Pseudogenes.org Pseudogenes for GTF2H1 Gene

genes like me logo Genes that share paralogs with GTF2H1: view

No data available for Paralogs for GTF2H1 Gene

Variants for GTF2H1 Gene

Sequence variations from dbSNP and Humsavar for GTF2H1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs4596 -- 18,366,581(-) ATATT(C/G)CCTCT utr-variant-3-prime
rs1973849 -- 18,364,399(-) GAATA(C/T)GTTTC intron-variant
rs2037867 -- 18,360,474(+) GTGAT(A/G)TAATT intron-variant
rs2068545 -- 18,329,504(+) TCTCC(A/T)GTCTC intron-variant
rs2068546 -- 18,329,572(+) TCAGA(A/T)GTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GTF2H1 Gene

Variant ID Type Subtype PubMed ID
nsv7695 CNV Insertion 18451855
nsv509392 CNV Insertion 20534489
nsv510999 CNV Complex 20534489
nsv523373 CNV Loss 19592680

Relevant External Links for GTF2H1 Gene

HapMap Linkage Disequilibrium report
GTF2H1
Human Gene Mutation Database (HGMD)
GTF2H1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GTF2H1 Gene

Disorders for GTF2H1 Gene

Relevant External Links for GTF2H1

Genetic Association Database (GAD)
GTF2H1
Human Genome Epidemiology (HuGE) Navigator
GTF2H1
genes like me logo Genes that share disorders with GTF2H1: view

No data available for UniProtKB/Swiss-Prot for GTF2H1 Gene

Publications for GTF2H1 Gene

  1. Genetic variants in GTF2H1 and risk of lung cancer: a case-control analysis in a Chinese population. (PMID: 18692935) Wu W. … Lu D. (Lung Cancer 2009) 3 23 48
  2. Cloning of the 62-kilodalton component of basic transcription factor BTF2. (PMID: 1529339) Fischer L. … Egly J.-M. (Science 1992) 2 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. Structural insight into the TFIIE-TFIIH interaction: TFIIE and p53 share the binding region on TFIIH. (PMID: 18354501) Okuda M. … Nishimura Y. (EMBO J. 2008) 3 23
  5. Genome-wide association study identifies two novel regions at 11p15.5-p13 and 1p31 with major impact on acute-phase serum amyloid A. (PMID: 21124955) Marzi C. … Gieger C. (PLoS Genet. 2010) 3 48

Products for GTF2H1 Gene

Sources for GTF2H1 Gene

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