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Aliases for GLI1 Gene

Aliases for GLI1 Gene

  • GLI Family Zinc Finger 1 2 3
  • Glioma-Associated Oncogene Homolog 1 (Zinc Finger Protein) 2 3
  • Oncogene GLI 3 4
  • GLI 3 4
  • Glioma-Associated Oncogene Family Zinc Finger 1 2
  • GLI-Kruppel Family Member GLI1 3
  • Glioma-Associated Oncogene 1 3
  • Glioma-Associated Oncogene 4

External Ids for GLI1 Gene

Previous HGNC Symbols for GLI1 Gene

  • GLI

Previous GeneCards Identifiers for GLI1 Gene

  • GC12P056141
  • GC12P057853
  • GC12P054892

Summaries for GLI1 Gene

Entrez Gene Summary for GLI1 Gene

  • This gene encodes a member of the Kruppel family of zinc finger proteins. The encoded transcription factor is activated by the sonic hedgehog signal transduction cascade and regulates stem cell proliferation. The activity and nuclear localization of this protein is negatively regulated by p53 in an inhibitory loop. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2009]

GeneCards Summary for GLI1 Gene

GLI1 (GLI Family Zinc Finger 1) is a Protein Coding gene. Diseases associated with GLI1 include necrobiosis lipoidica and granuloma annulare. Among its related pathways are Signaling by GPCR and Pathways in cancer. GO annotations related to this gene include chromatin binding and microtubule binding. An important paralog of this gene is ZIC4.

UniProtKB/Swiss-Prot for GLI1 Gene

  • Acts as a transcriptional activator (PubMed:19706761, PubMed:10806483, PubMed:19878745, PubMed:24311597, PubMed:24217340). Binds to the DNA consensus sequence 5-GACCACCCA-3 (PubMed:2105456, PubMed:8378770, PubMed:24217340). May regulate the transcription of specific genes during normal development (PubMed:19706761). May play a role in craniofacial development and digital development, as well as development of the central nervous system and gastrointestinal tract. Mediates SHH signaling (PubMed:19706761). Plays a role in cell proliferation and differentiation via its role in SHH signaling (Probable).

  • Isoform 2: Acts as a transcriptional activator, but activates a different set of genes than isoform 1. Activates expression of CD24, unlike isoform 1. Mediates SHH signaling. Promotes cancer cell migration.

Tocris Summary for GLI1 Gene

  • The Hedgehog (Hh) signaling pathway is crucial in the development of all animals. In the embryo, it regulates morphogenesis of a variety of tissues and organs; in the adult, it controls stem cell proliferation. There are three known human Hh proteins: Shh, Dhh and Ihh.

Gene Wiki entry for GLI1 Gene

No data available for PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for GLI1 Gene

Genomics for GLI1 Gene

Regulatory Elements for GLI1 Gene

Genomic Location for GLI1 Gene

Chromosome:
12
Start:
57,460,135 bp from pter
End:
57,472,268 bp from pter
Size:
12,134 bases
Orientation:
Plus strand

Genomic View for GLI1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for GLI1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for GLI1 Gene

Proteins for GLI1 Gene

  • Protein details for GLI1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P08151-GLI1_HUMAN
    Recommended name:
    Zinc finger protein GLI1
    Protein Accession:
    P08151
    Secondary Accessions:
    • D0EUY3
    • E9PQQ9
    • F5H6H8
    • Q8TDN9

    Protein attributes for GLI1 Gene

    Size:
    1106 amino acids
    Molecular mass:
    117904 Da
    Quaternary structure:
    • Interacts with KIF7 (By similarity). Interacts with STK36 (PubMed:10806483). Interacts with ZIC1; the interaction enhances transcription activation (PubMed:11238441). Interacts with SUFU; this inhibits transcriptional activation by GLI1 (PubMed:10806483, PubMed:24311597, PubMed:24217340).

    Three dimensional structures from OCA and Proteopedia for GLI1 Gene

    Alternative splice isoforms for GLI1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for GLI1 Gene

Proteomics data for GLI1 Gene at MOPED

Post-translational modifications for GLI1 Gene

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for GLI1 (GLI1)

No data available for DME Specific Peptides for GLI1 Gene

Domains & Families for GLI1 Gene

Gene Families for GLI1 Gene

Protein Domains for GLI1 Gene

Suggested Antigen Peptide Sequences for GLI1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P08151

UniProtKB/Swiss-Prot:

GLI1_HUMAN :
  • Belongs to the GLI C2H2-type zinc-finger protein family.
  • Contains 5 C2H2-type zinc fingers.
Family:
  • Belongs to the GLI C2H2-type zinc-finger protein family.
Similarity:
  • Contains 5 C2H2-type zinc fingers.
genes like me logo Genes that share domains with GLI1: view

Function for GLI1 Gene

Molecular function for GLI1 Gene

UniProtKB/Swiss-Prot Function:
Acts as a transcriptional activator (PubMed:19706761, PubMed:10806483, PubMed:19878745, PubMed:24311597, PubMed:24217340). Binds to the DNA consensus sequence 5-GACCACCCA-3 (PubMed:2105456, PubMed:8378770, PubMed:24217340). May regulate the transcription of specific genes during normal development (PubMed:19706761). May play a role in craniofacial development and digital development, as well as development of the central nervous system and gastrointestinal tract. Mediates SHH signaling (PubMed:19706761). Plays a role in cell proliferation and differentiation via its role in SHH signaling (Probable).
UniProtKB/Swiss-Prot Function:
Isoform 2: Acts as a transcriptional activator, but activates a different set of genes than isoform 1. Activates expression of CD24, unlike isoform 1. Mediates SHH signaling. Promotes cancer cell migration.
UniProtKB/Swiss-Prot Induction:
Isoform 1 and isoform 2 are amplified in glioblastoma cells.

Gene Ontology (GO) - Molecular Function for GLI1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding IDA 9118802
GO:0003682 chromatin binding IEA --
GO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IEA --
GO:0005515 protein binding IPI 10564661
genes like me logo Genes that share ontologies with GLI1: view
genes like me logo Genes that share phenotypes with GLI1: view

Animal Models for GLI1 Gene

MGI Knock Outs for GLI1:

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GLI1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for GLI1 Gene

Localization for GLI1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for GLI1 Gene

Cytoplasm. Nucleus. Note=Tethered in the cytoplasm by binding to SUFU (PubMed:10806483). Activation and translocation to the nucleus is promoted by interaction with STK36 (PubMed:10806483). Phosphorylation by ULK3 may promote nuclear localization (PubMed:19878745). Translocation to the nucleus is promoted by interaction with ZIC1 (PubMed:11238441). {ECO:0000269 PubMed:10806483, ECO:0000269 PubMed:11238441, ECO:0000269 PubMed:19878745}.
Isoform 2: Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for GLI1 Gene COMPARTMENTS Subcellular localization image for GLI1 gene
Compartment Confidence
cytosol 5
nucleus 5
cytoskeleton 2
plasma membrane 2
extracellular 1

Gene Ontology (GO) - Cellular Components for GLI1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 10806483
GO:0005654 nucleoplasm TAS --
GO:0005737 cytoplasm IDA 10504446
GO:0005829 cytosol TAS --
GO:0005929 cilium --
genes like me logo Genes that share ontologies with GLI1: view

Pathways & Interactions for GLI1 Gene

genes like me logo Genes that share pathways with GLI1: view

PCR Array Products

SIGNOR curated interactions for GLI1 Gene

Activates:
Is activated by:
Is inactivated by:

Gene Ontology (GO) - Biological Process for GLI1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001649 osteoblast differentiation IDA 12165851
GO:0006351 transcription, DNA-templated IEA --
GO:0007224 smoothened signaling pathway TAS 11001584
GO:0007283 spermatogenesis IEA --
GO:0007418 ventral midline development IEA --
genes like me logo Genes that share ontologies with GLI1: view

Drugs & Compounds for GLI1 Gene

(3) Drugs for GLI1 Gene - From: NovoSeek, ApexBio, and Tocris

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Zinc Approved Pharma 1404
Cyclopamine Pharma Hedgehog (Hh) signaling Inhibitor, Inhibitor of Hedgehog (Hh) signaling 0
GANT 58 Pharma GLI antagonist,novel and potent 0

(8) Additional Compounds for GLI1 Gene - From: Tocris and NovoSeek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
20(S)-Hydroxycholesterol
516-72-3
AY 9944 dihydrochloride
366-93-8
thiostrepton
1393-48-2
U 18666A
3039-71-2
ACTB
genes like me logo Genes that share compounds with GLI1: view

Drug Products

Transcripts for GLI1 Gene

Unigene Clusters for GLI1 Gene

GLI family zinc finger 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for GLI1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for GLI1 Gene

No ASD Table

Relevant External Links for GLI1 Gene

GeneLoc Exon Structure for
GLI1
ECgene alternative splicing isoforms for
GLI1

Expression for GLI1 Gene

mRNA expression in normal human tissues for GLI1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for GLI1 Gene

This gene is overexpressed in Nerve - Tibial (x9.7) and Cervix - Endocervix (x4.9).

Protein differential expression in normal tissues from HIPED for GLI1 Gene

This gene is overexpressed in Pancreatic juice (51.0) and Peripheral blood mononuclear cells (14.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for GLI1 Gene



SOURCE GeneReport for Unigene cluster for GLI1 Gene Hs.632702

mRNA Expression by UniProt/SwissProt for GLI1 Gene

P08151-GLI1_HUMAN
Tissue specificity: Detected in testis (at protein level) (PubMed:2105456). Testis, myometrium and fallopian tube. Also expressed in the brain with highest expression in the cerebellum, optic nerve and olfactory tract (PubMed:19878745). Isoform 1 is detected in brain, spleen, pancreas, liver, kidney and placenta; isoform 2 is not detectable in these tissues (PubMed:19706761).
genes like me logo Genes that share expression patterns with GLI1: view

Protein tissue co-expression partners for GLI1 Gene

Primer Products

In Situ Assay Products

Orthologs for GLI1 Gene

This gene was present in the common ancestor of animals.

Orthologs for GLI1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia GLI1 35
  • 88.87 (n)
  • 90.05 (a)
GLI1 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia GLI1 35
  • 89.77 (n)
  • 91.22 (a)
GLI1 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gli1 35
  • 84.03 (n)
  • 86.05 (a)
Gli1 16
Gli1 36
  • 85 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia GLI1 35
  • 99.52 (n)
  • 99.19 (a)
GLI1 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Gli1 35
  • 83.88 (n)
  • 86.23 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 18 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 28 (a)
ManyToMany
chicken
(Gallus gallus)
Aves GLI1 36
  • 62 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia GLI1 36
  • 44 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii -- 35
gli1 36
  • 36 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta ci 36
  • 20 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea ref-2 36
  • 32 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 20 (a)
OneToMany
Species with no ortholog for GLI1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for GLI1 Gene

ENSEMBL:
Gene Tree for GLI1 (if available)
TreeFam:
Gene Tree for GLI1 (if available)

Paralogs for GLI1 Gene

Paralogs for GLI1 Gene

genes like me logo Genes that share paralogs with GLI1: view

Variants for GLI1 Gene

Sequence variations from dbSNP and Humsavar for GLI1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs492239 -- 57,469,018(+) aagtg(C/T)tggga intron-variant
rs2228224 - 57,471,538(+) GGGGG(A/G)TTCCC missense, reference
rs2228225 -- 57,465,648(+) CGGGA(A/C/G)GAACC synonymous-codon, reference
rs2242578 -- 57,459,370(+) CTAGG(C/G)AAAGG upstream-variant-2KB
rs2292657 -- 57,466,149(-) TTCCA(C/T)GACTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for GLI1 Gene

Variant ID Type Subtype PubMed ID
nsv899117 CNV Loss 21882294
nsv899118 CNV Gain 21882294
dgv513e1 CNV Complex 17122850
nsv428283 CNV Gain 18775914
nsv469411 CNV Loss 19166990
nsv899119 CNV Loss 21882294
nsv8974 CNV Gain 18304495

Variation tolerance for GLI1 Gene

Residual Variation Intolerance Score: 12.62% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.43; 90.94% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for GLI1 Gene

HapMap Linkage Disequilibrium report
GLI1
Human Gene Mutation Database (HGMD)
GLI1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for GLI1 Gene

Disorders for GLI1 Gene

MalaCards: The human disease database

(17) MalaCards diseases for GLI1 Gene - From: DISEASES, NovoSeek, and GeneCards

Disorder Aliases PubMed IDs
necrobiosis lipoidica
granuloma annulare
  • granulome annulare
gastric squamous cell carcinoma
  • squamous cell carcinoma of stomach
pallister-hall syndrome
  • hypothalamic hamartoblastoma, hypopituitarism, imperforate anus, and postaxial polydactyly
gastric tubular adenocarcinoma
  • tubular adenocarcinoma of stomach
- elite association
Search GLI1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for GLI1

Genetic Association Database (GAD)
GLI1
Human Genome Epidemiology (HuGE) Navigator
GLI1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
GLI1
genes like me logo Genes that share disorders with GLI1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for GLI1 Gene

Publications for GLI1 Gene

  1. Expression of Gli1 correlates with the transition of breast cancer cells to estrogen-independent growth. (PMID: 19191023) Zhao J. … Lu J. (Breast Cancer Res. Treat. 2010) 23 67
  2. Contrasting activity of Hedgehog and Wnt pathways according to gastric cancer cell differentiation: relevance of crosstalk mechanisms. (PMID: 19930158) Kim J.H. … Lee Y.C. (Cancer Sci. 2010) 23 67
  3. Beta1 integrins mediate cell proliferation in three-dimensional cultures by regulating expression of the sonic hedgehog effector protein, GLI1. (PMID: 20333644) Goel H.L. … Languino L.R. (J. Cell. Physiol. 2010) 23 67
  4. Histone deacetylase and Cullin3-REN(KCTD11) ubiquitin ligase interplay regulates Hedgehog signalling through Gli acetylation. (PMID: 20081843) Canettieri G. … Gulino A. (Nat. Cell Biol. 2010) 23 67
  5. Hedgehog promotes neovascularization in pancreatic cancers by regulating Ang-1 and IGF-1 expression in bone-marrow derived pro-angiogenic cells. (PMID: 20098680) Nakamura K. … Kohgo Y. (PLoS ONE 2010) 23 67

Products for GLI1 Gene

  • Addgene plasmids for GLI1

Sources for GLI1 Gene

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