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Aliases for SALL3 Gene

Aliases for SALL3 Gene

  • Spalt Like Transcription Factor 3 2 3 5
  • Zinc Finger Protein 796 3 4
  • ZNF796 3 4
  • HSALL3 3 4
  • C2H2 Zinc Finger Protein SALL3 3
  • Spalt-Like Zinc Finger Protein 3
  • Zinc Finger Protein SALL3 4
  • Sal (Drosophila)-Like 3 2
  • Sal-Like 3 (Drosophila) 2
  • Sal-Like Protein 3 3

External Ids for SALL3 Gene

Previous GeneCards Identifiers for SALL3 Gene

  • GC18U990052
  • GC18P076766
  • GC18P076475
  • GC18P074839
  • GC18P074841
  • GC18P073383

Summaries for SALL3 Gene

Entrez Gene Summary for SALL3 Gene

  • This gene encodes a sal-like C2H2-type zinc-finger protein, and belongs to a family of evolutionarily conserved genes found in species as diverse as Drosophila, C. elegans, and vertebrates. Mutations in some of these genes are associated with congenital disorders in human, suggesting their importance in embryonic development. This protein binds to DNA methyltransferase 3 alpha (DNMT3A), and reduces DNMT3A-mediated CpG island methylation. It is suggested that silencing of this gene, resulting in acceleration of DNA methylation, may have a role in oncogenesis. [provided by RefSeq, Oct 2011]

GeneCards Summary for SALL3 Gene

SALL3 (Spalt Like Transcription Factor 3) is a Protein Coding gene. An important paralog of this gene is SALL1.

UniProtKB/Swiss-Prot for SALL3 Gene

  • Probable transcription factor.

Gene Wiki entry for SALL3 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SALL3 Gene

Genomics for SALL3 Gene

Regulatory Elements for SALL3 Gene

Enhancers for SALL3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18G078814 0.3 FANTOM5 4.7 -165.4 -165401 0.2 SALL3 ENSG00000266273 PIR40267 GC18M078901
GH18G078980 1.8 ENCODE 0.7 +1.1 1084 2.3 ZBTB21 SUZ12 JUN RBBP5 FOSL1 HIC1 ZFHX2 ZNF366 FOSL2 NFE2 SALL3 ATP9B
GH18G078984 0.7 ENCODE 0.7 +4.8 4779 0.5 CTCF RFX1 CHD1 REST RAD21 FOXA1 POLR2A SMARCA4 SMC3 ZNF652 SALL3 ATP9B
GH18G078983 0.5 ENCODE 0.7 +3.3 3259 0.9 HLF TEAD4 CHD1 POU5F1 CHD7 SALL3 ATP9B
GH18G078986 0.7 ENCODE 0.4 +6.1 6081 0.2 SCRT1 CTCF ZNF654 L3MBTL2 ZNF792 CEBPB CBX2 REST ZIC2 RAD21 SALL3 ATP9B
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SALL3 on UCSC Golden Path with GeneCards custom track

Genomic Location for SALL3 Gene

Chromosome:
18
Start:
78,980,275 bp from pter
End:
79,002,677 bp from pter
Size:
22,403 bases
Orientation:
Plus strand

Genomic View for SALL3 Gene

Genes around SALL3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SALL3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SALL3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SALL3 Gene

Proteins for SALL3 Gene

  • Protein details for SALL3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BXA9-SALL3_HUMAN
    Recommended name:
    Sal-like protein 3
    Protein Accession:
    Q9BXA9
    Secondary Accessions:
    • Q9UGH1

    Protein attributes for SALL3 Gene

    Size:
    1300 amino acids
    Molecular mass:
    135346 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SALL3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SALL3 Gene

Post-translational modifications for SALL3 Gene

  • Ubiquitination at Lys1198
  • Modification sites at PhosphoSitePlus

Other Protein References for SALL3 Gene

No data available for DME Specific Peptides for SALL3 Gene

Domains & Families for SALL3 Gene

Gene Families for SALL3 Gene

Protein Domains for SALL3 Gene

Suggested Antigen Peptide Sequences for SALL3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BXA9

UniProtKB/Swiss-Prot:

SALL3_HUMAN :
  • Belongs to the sal C2H2-type zinc-finger protein family.
Family:
  • Belongs to the sal C2H2-type zinc-finger protein family.
genes like me logo Genes that share domains with SALL3: view

Function for SALL3 Gene

Molecular function for SALL3 Gene

GENATLAS Biochemistry:
spalt (sal)-like,Drosophila SAL like gene 3,expressed in fetal brain and in several adult tissues,haploinsufficency in the 18q deletion syndrome and may be contributing to the phenotype
UniProtKB/Swiss-Prot Function:
Probable transcription factor.

Gene Ontology (GO) - Molecular Function for SALL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IBA --
GO:0043565 sequence-specific DNA binding IBA --
GO:0044212 transcription regulatory region DNA binding IBA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with SALL3: view
genes like me logo Genes that share phenotypes with SALL3: view

Animal Models for SALL3 Gene

MGI Knock Outs for SALL3:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SALL3 Gene

Localization for SALL3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SALL3 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SALL3 gene
Compartment Confidence
nucleus 3

Gene Ontology (GO) - Cellular Components for SALL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA,IBA --
genes like me logo Genes that share ontologies with SALL3: view

Pathways & Interactions for SALL3 Gene

SuperPathways for SALL3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SALL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA,IBA --
GO:0006366 transcription from RNA polymerase II promoter IBA --
GO:0007165 signal transduction IBA --
GO:0021891 olfactory bulb interneuron development IEA --
genes like me logo Genes that share ontologies with SALL3: view

No data available for Pathways by source and SIGNOR curated interactions for SALL3 Gene

Drugs & Compounds for SALL3 Gene

No Compound Related Data Available

Transcripts for SALL3 Gene

mRNA/cDNA for SALL3 Gene

Unigene Clusters for SALL3 Gene

Sal-like 3 (Drosophila):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SALL3 Gene

No ASD Table

Relevant External Links for SALL3 Gene

GeneLoc Exon Structure for
SALL3
ECgene alternative splicing isoforms for
SALL3

Expression for SALL3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SALL3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SALL3 Gene

This gene is overexpressed in Vagina (x6.1), Brain - Spinal cord (cervical c-1) (x5.5), Brain - Caudate (basal ganglia) (x4.4), Brain - Amygdala (x4.2), and Brain - Nucleus accumbens (basal ganglia) (x4.1).

Protein differential expression in normal tissues from HIPED for SALL3 Gene

This gene is overexpressed in Saliva (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SALL3 Gene



Protein tissue co-expression partners for SALL3 Gene

NURSA nuclear receptor signaling pathways regulating expression of SALL3 Gene:

SALL3

SOURCE GeneReport for Unigene cluster for SALL3 Gene:

Hs.700557

mRNA Expression by UniProt/SwissProt for SALL3 Gene:

Q9BXA9-SALL3_HUMAN
Tissue specificity: Widely expressed in adult with highest levels in heart. Expressed in fetal brain (in neurons of hippocampus, cortex, mediodorsal and ventrolateral thalamic nuclei, putamen, cerebellum and brainstem).
genes like me logo Genes that share expression patterns with SALL3: view

Primer Products

No data available for Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SALL3 Gene

Orthologs for SALL3 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SALL3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SALL3 34 35
  • 98.4 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia SALL3 35
  • 85 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SALL3 34
  • 83.16 (n)
dog
(Canis familiaris)
Mammalia SALL3 35
  • 81 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sall3 34
  • 80.99 (n)
mouse
(Mus musculus)
Mammalia Sall3 34 16 35
  • 79 (n)
oppossum
(Monodelphis domestica)
Mammalia SALL3 35
  • 77 (a)
OneToOne
chicken
(Gallus gallus)
Aves SALL3 34 35
  • 71.51 (n)
lizard
(Anolis carolinensis)
Reptilia SALL3 35
  • 74 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sall3 34
  • 65.82 (n)
African clawed frog
(Xenopus laevis)
Amphibia sal1-A 34
zebrafish
(Danio rerio)
Actinopterygii LOC560775 34
  • 65.3 (n)
sall3a 35
  • 56 (a)
OneToMany
sall3b 35
  • 53 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta salr 35
  • 27 (a)
ManyToMany
salm 35
  • 26 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea sem-4 35
  • 30 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes FZF1 35
  • 27 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 29 (a)
ManyToMany
-- 35
  • 25 (a)
ManyToMany
Species where no ortholog for SALL3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SALL3 Gene

ENSEMBL:
Gene Tree for SALL3 (if available)
TreeFam:
Gene Tree for SALL3 (if available)

Paralogs for SALL3 Gene

Paralogs for SALL3 Gene

Pseudogenes.org Pseudogenes for SALL3 Gene

genes like me logo Genes that share paralogs with SALL3: view

Variants for SALL3 Gene

Sequence variations from dbSNP and Humsavar for SALL3 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
VAR_035552 A colorectal cancer sample
rs1789251 -- 78,998,016(-) aaaaa(A/G)GGCTT utr-variant-3-prime
rs2447437 --
rs34639588 -- 78,997,889(+) TGTGA(-/T)TTTTT utr-variant-3-prime
rs35983860 -- 78,998,016(+) AAGCC(-/TT)TTTTT utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SALL3 Gene

Variant ID Type Subtype PubMed ID
dgv564n67 CNV gain 20364138
dgv565n67 CNV gain 20364138
dgv6099n54 CNV gain 21841781
dgv6100n54 CNV loss 21841781
dgv6101n54 CNV gain 21841781
dgv6102n54 CNV gain+loss 21841781
dgv6103n54 CNV loss 21841781
dgv6104n54 CNV gain+loss 21841781
esv2666555 CNV deletion 23128226
esv2717497 CNV deletion 23290073
esv29012 CNV loss 19812545
esv3643277 CNV loss 21293372
esv3643278 CNV gain 21293372
nsv1065902 CNV gain 25217958
nsv1071874 CNV deletion 25765185
nsv1133432 CNV deletion 24896259
nsv1141945 CNV deletion 24896259
nsv1143887 CNV deletion 24896259
nsv2377 CNV insertion 18451855
nsv458313 CNV loss 19166990
nsv577793 CNV loss 21841781
nsv577794 CNV gain 21841781
nsv577795 CNV loss 21841781
nsv577796 CNV loss 21841781
nsv577799 CNV gain+loss 21841781
nsv577800 CNV loss 21841781
nsv577821 CNV loss 21841781
nsv828333 CNV loss 20364138
nsv828338 CNV gain 20364138
nsv828342 CNV gain 20364138

Variation tolerance for SALL3 Gene

Residual Variation Intolerance Score: 37.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.15; 69.47% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SALL3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SALL3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SALL3 Gene

Disorders for SALL3 Gene

Relevant External Links for SALL3

Genetic Association Database (GAD)
SALL3
Human Genome Epidemiology (HuGE) Navigator
SALL3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SALL3

No disorders were found for SALL3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SALL3 Gene

Publications for SALL3 Gene

  1. SALL3, a new member of the human spalt-like gene family, maps to 18q23. (PMID: 10610715) Kohlhase J. … Engel W. (Genomics 1999) 2 3 4 64
  2. Maternal genes and facial clefts in offspring: a comprehensive search for genetic associations in two population-based cleft studies from Scandinavia. (PMID: 20634891) Jugessur A. … Murray J.C. (PLoS ONE 2010) 3 46 64
  3. Genome-wide association study of rheumatoid arthritis in the Spanish population: KLF12 as a risk locus for rheumatoid arthritis susceptibility. (PMID: 18668548) JuliA A. … Marsal S. (Arthritis Rheum. 2008) 3 46 64
  4. The variant Polycomb Repressor Complex 1 component PCGF1 interacts with a pluripotency sub-network that includes DPPA4, a regulator of embryogenesis. (PMID: 26687479) Oliviero G. … Cagney G. (Sci. Rep. 2015) 3 64
  5. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3 64

Products for SALL3 Gene

Sources for SALL3 Gene

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