Free for academic non-profit institutions. Other users need a Commercial license

Aliases for RAD54B Gene

Aliases for RAD54B Gene

  • RAD54 Homolog B (S. Cerevisiae) 2 3 5
  • RAD54 Homolog B 4
  • EC 3.6.4.- 4
  • EC 3.6.1 63
  • RDH54 3

External Ids for RAD54B Gene

Previous GeneCards Identifiers for RAD54B Gene

  • GC08M094130
  • GC08M095230
  • GC08M095052
  • GC08M095340
  • GC08M095453
  • GC08M095384
  • GC08M090593

Summaries for RAD54B Gene

Entrez Gene Summary for RAD54B Gene

  • The protein encoded by this gene belongs to the DEAD-like helicase superfamily. It shares similarity with Saccharomyces cerevisiae RAD54 and RDH54, both of which are involved in homologous recombination and repair of DNA. This protein binds to double-stranded DNA, and displays ATPase activity in the presence of DNA. This gene is highly expressed in testis and spleen, which suggests active roles in meiotic and mitotic recombination. Homozygous mutations of this gene were observed in primary lymphoma and colon cancer. [provided by RefSeq, Jul 2008]

GeneCards Summary for RAD54B Gene

RAD54B (RAD54 Homolog B (S. Cerevisiae)) is a Protein Coding gene. Diseases associated with RAD54B include lymphoma, non-hodgkin and colorectal cancer. Among its related pathways are Homologous recombination. GO annotations related to this gene include hydrolase activity and RNA helicase activity.

UniProtKB/Swiss-Prot for RAD54B Gene

  • Involved in DNA repair and mitotic recombination. May play an active role in recombination processes in concert with other members of the RAD52 epistasis group.

Gene Wiki entry for RAD54B Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for RAD54B Gene

Genomics for RAD54B Gene

Regulatory Elements for RAD54B Gene

Enhancers for RAD54B Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around RAD54B on UCSC Golden Path with GeneCards custom track

Promoters for RAD54B Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around RAD54B on UCSC Golden Path with GeneCards custom track

Genomic Location for RAD54B Gene

Chromosome:
8
Start:
94,371,960 bp from pter
End:
94,475,115 bp from pter
Size:
103,156 bases
Orientation:
Minus strand

Genomic View for RAD54B Gene

Genes around RAD54B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
RAD54B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for RAD54B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for RAD54B Gene

Proteins for RAD54B Gene

  • Protein details for RAD54B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9Y620-RA54B_HUMAN
    Recommended name:
    DNA repair and recombination protein RAD54B
    Protein Accession:
    Q9Y620
    Secondary Accessions:
    • F6WBS8

    Protein attributes for RAD54B Gene

    Size:
    910 amino acids
    Molecular mass:
    102967 Da
    Quaternary structure:
    • Interacts with RAD51 through the NH2-terminal domain. Immunoprecipitation experiments show that the interaction is constitutive and not induced by ionizing radiation. The interaction may be indirect.

    Alternative splice isoforms for RAD54B Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for RAD54B Gene

Proteomics data for RAD54B Gene at MOPED

Selected DME Specific Peptides for RAD54B Gene

Post-translational modifications for RAD54B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for RAD54B Gene

Antibody Products

Domains & Families for RAD54B Gene

Protein Domains for RAD54B Gene

Suggested Antigen Peptide Sequences for RAD54B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9Y620

UniProtKB/Swiss-Prot:

RA54B_HUMAN :
  • Contains 1 helicase ATP-binding domain.
  • Belongs to the SNF2/RAD54 helicase family.
Domain:
  • Contains 1 helicase ATP-binding domain.
  • Contains 1 helicase C-terminal domain.
Family:
  • Belongs to the SNF2/RAD54 helicase family.
genes like me logo Genes that share domains with RAD54B: view

No data available for Gene Families for RAD54B Gene

Function for RAD54B Gene

Molecular function for RAD54B Gene

GENATLAS Biochemistry:
yeast (S cerevisiae) RAD54 homolog,recombination gene,highly expressed in testis and spleen,homozygously mutated in primary lymphoma and colon cancer
UniProtKB/Swiss-Prot Function:
Involved in DNA repair and mitotic recombination. May play an active role in recombination processes in concert with other members of the RAD52 epistasis group.

Enzyme Numbers (IUBMB) for RAD54B Gene

Gene Ontology (GO) - Molecular Function for RAD54B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
genes like me logo Genes that share ontologies with RAD54B: view
genes like me logo Genes that share phenotypes with RAD54B: view

Human Phenotype Ontology for RAD54B Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for RAD54B Gene

MGI Knock Outs for RAD54B:

Animal Model Products

CRISPR Products

miRNA for RAD54B Gene

miRTarBase miRNAs that target RAD54B

No data available for Transcription Factor Targets and HOMER Transcription for RAD54B Gene

Localization for RAD54B Gene

Subcellular locations from UniProtKB/Swiss-Prot for RAD54B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for RAD54B Gene COMPARTMENTS Subcellular localization image for RAD54B gene
Compartment Confidence
nucleus 5
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for RAD54B Gene

Pathways & Interactions for RAD54B Gene

genes like me logo Genes that share pathways with RAD54B: view

Pathways by source for RAD54B Gene

1 BioSystems pathway for RAD54B Gene
1 KEGG pathway for RAD54B Gene

Gene Ontology (GO) - Biological Process for RAD54B Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000724 double-strand break repair via homologous recombination IDA 16428451
GO:0006312 mitotic recombination TAS 10362364
GO:0008340 determination of adult lifespan IEA --
genes like me logo Genes that share ontologies with RAD54B: view

No data available for SIGNOR curated interactions for RAD54B Gene

Drugs & Compounds for RAD54B Gene

No Compound Related Data Available

Transcripts for RAD54B Gene

Unigene Clusters for RAD54B Gene

RAD54 homolog B (S. cerevisiae):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for RAD54B Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11a · 11b ^ 12a · 12b ^ 13a · 13b
SP1: - -
SP2: - -
SP3:
SP4:
SP5: -
SP6:

Relevant External Links for RAD54B Gene

GeneLoc Exon Structure for
RAD54B
ECgene alternative splicing isoforms for
RAD54B

Expression for RAD54B Gene

mRNA expression in normal human tissues for RAD54B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for RAD54B Gene



SOURCE GeneReport for Unigene cluster for RAD54B Gene Hs.744229

mRNA Expression by UniProt/SwissProt for RAD54B Gene

Q9Y620-RA54B_HUMAN
Tissue specificity: Abundantly expressed in testis and spleen. Relatively low levels observed in thymus, prostate, ovary and colon.
genes like me logo Genes that share expression patterns with RAD54B: view

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues and Protein tissue co-expression partners for RAD54B Gene

Orthologs for RAD54B Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for RAD54B Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia RAD54B 35
  • 89.46 (n)
  • 85.79 (a)
RAD54B 36
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia RAD54B 35
  • 89.66 (n)
  • 85.48 (a)
RAD54B 36
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Rad54b 35
  • 83.07 (n)
  • 80.61 (a)
Rad54b 16
Rad54b 36
  • 80 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia RAD54B 35
  • 99.63 (n)
  • 99.56 (a)
RAD54B 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Rad54b 35
  • 81.35 (n)
  • 78.03 (a)
oppossum
(Monodelphis domestica)
Mammalia RAD54B 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia RAD54B 36
  • 77 (a)
OneToOne
chicken
(Gallus gallus)
Aves RAD54B 35
  • 72.2 (n)
  • 70.24 (a)
RAD54B 36
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia RAD54B 36
  • 71 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia rad54b 35
  • 65.83 (n)
  • 66.33 (a)
Str.5565 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.32066 35
zebrafish
(Danio rerio)
Actinopterygii rad54b 35
  • 57.95 (n)
  • 57.16 (a)
rad54b 36
  • 53 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006945 35
  • 48.5 (n)
  • 46.17 (a)
worm
(Caenorhabditis elegans)
Secernentea Y116A8C.13 37
  • 41 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AGL212W 35
  • 48.74 (n)
  • 43.6 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F11814g 35
  • 55.53 (n)
  • 50.57 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RDH54 35
  • 49.37 (n)
  • 43.3 (a)
RAD54 36
  • 33 (a)
OneToMany
RDH54 38
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes rdh54 35
  • 49.9 (n)
  • 41.34 (a)
Species with no ortholog for RAD54B:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for RAD54B Gene

ENSEMBL:
Gene Tree for RAD54B (if available)
TreeFam:
Gene Tree for RAD54B (if available)

Paralogs for RAD54B Gene

(2) SIMAP similar genes for RAD54B Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with RAD54B: view

No data available for Paralogs for RAD54B Gene

Variants for RAD54B Gene

Sequence variations from dbSNP and Humsavar for RAD54B Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
VAR_019563 A colon cancer sample
rs114216685 A non-Hodgkin lymphoma sample 94,391,640(+) GGTGA(C/T)TGCAC reference, missense
rs28910279 - 94,467,452(-) CAGGT(C/G)TGAAT reference, missense
rs2919661 - 94,458,283(-) CATTA(C/G)ATCCA reference, missense
VAR_075089 -

Structural Variations from Database of Genomic Variants (DGV) for RAD54B Gene

Variant ID Type Subtype PubMed ID
nsv831401 CNV Loss 17160897
nsv6313 CNV Insertion 18451855
nsv891202 CNV Loss 21882294

Variation tolerance for RAD54B Gene

Residual Variation Intolerance Score: 68.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 3.05; 50.50% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for RAD54B Gene

HapMap Linkage Disequilibrium report
RAD54B
Human Gene Mutation Database (HGMD)
RAD54B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for RAD54B Gene

Disorders for RAD54B Gene

MalaCards: The human disease database

(2) MalaCards diseases for RAD54B Gene - From: OMIM, ClinVar, and DISEASES

Disorder Aliases PubMed IDs
lymphoma, non-hodgkin
  • lymphoma, non-hodgkin, somatic
colorectal cancer
  • colorectal cancer, somatic
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for RAD54B

Genetic Association Database (GAD)
RAD54B
Human Genome Epidemiology (HuGE) Navigator
RAD54B
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
RAD54B
genes like me logo Genes that share disorders with RAD54B: view

No data available for UniProtKB/Swiss-Prot and Genatlas for RAD54B Gene

Publications for RAD54B Gene

  1. Mutations of a novel human RAD54 homologue, RAD54B, in primary cancer. (PMID: 10362364) Hiramoto T. … Kamiya K. (Oncogene 1999) 2 3 4 23 67
  2. A novel human Rad54 homologue, Rad54B, associates with Rad51. (PMID: 10851248) Tanaka K. … Miyagawa K. (J. Biol. Chem. 2000) 2 3 23
  3. [Analysis of loss of heterozygosity and microsatellite instability RAD52, RAD54 and RAD54B gene and BRCA1 gene mutation in breast cancer]. (PMID: 17405295) Romanowicz-Makowska H. … Smolarz B. (Pol. Merkur. Lekarski 2006) 3 23
  4. Human Rad54B is a double-stranded DNA-dependent ATPase and has biochemical properties different from its structural homolog in yeast, Tid1/Rdh54. (PMID: 11884632) Tanaka K. … Miyagawa K. (Nucleic Acids Res. 2002) 3 23
  5. Interaction of amyotrophic lateral sclerosis/frontotemporal lobar degeneration-associated fused-in-sarcoma with proteins involved in metabolic and protein degradation pathways. (PMID: 25192599) Wang T. … Xu J. (Neurobiol. Aging 2015) 3

Products for RAD54B Gene

Sources for RAD54B Gene

Content