Free for academic non-profit institutions. Other users need a Commercial license

Aliases for CORO1C Gene

Aliases for CORO1C Gene

  • Coronin 1C 2 3 5
  • Coronin-3 3 4
  • HCRNN4 3 4
  • Coronin, Actin-Binding Protein, 1C 2
  • Coronin, Actin Binding Protein, 1C 3
  • Coronin-1C 3
  • CRNN4 4
  • CRN2 4

External Ids for CORO1C Gene

Previous GeneCards Identifiers for CORO1C Gene

  • GC12M108144
  • GC12M108919
  • GC12M108971
  • GC12M107541
  • GC12M109038
  • GC12M106103

Summaries for CORO1C Gene

Entrez Gene Summary for CORO1C Gene

  • This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. Three transcript variants encoding two different isoforms have been found for this gene. [provided by RefSeq, Feb 2013]

GeneCards Summary for CORO1C Gene

CORO1C (Coronin 1C) is a Protein Coding gene. Diseases associated with CORO1C include Coronin-1A Deficiency. GO annotations related to this gene include actin filament binding. An important paralog of this gene is CORO1B.

UniProtKB/Swiss-Prot for CORO1C Gene

  • May be involved in cytokinesis, motility, and signal transduction.

  • Isoform 3: Involved in myogenic differentiation.

Gene Wiki entry for CORO1C Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CORO1C Gene

Genomics for CORO1C Gene

Regulatory Elements for CORO1C Gene

Enhancers for CORO1C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G108626 2.1 FANTOM5 Ensembl ENCODE dbSUPER 29.4 +92.7 92733 24.2 CREB3L1 MLX ZFP64 DMAP1 FEZF1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 PWP1 CORO1C SART3 PRDM4 UBE3B FICD KCTD10 SELPLG TMEM119 RPL17P38
GH12G108684 2 FANTOM5 Ensembl ENCODE dbSUPER 20.6 +40.0 39961 13.6 CREB3L1 FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC TBX21 MEF2D SSRP1 CORO1C RNU7-169P SELPLG ENSG00000257221 MVK SSH1 GC12P108678 GC12P108720
GH12G108699 2 FANTOM5 Ensembl ENCODE dbSUPER 20.1 +29.9 29854 4.6 CREB3L1 MLX ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 SART3 CORO1C WSCD2 RNU7-169P UBE3B RNU4-32P LOC101929162 PRDM4 ENSG00000257221 MVK
GH12G108820 2.1 FANTOM5 Ensembl ENCODE dbSUPER 18.1 -100.1 -100115 23.4 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A FEZF1 YY1 ZNF766 CBX5 SART3 SSH1 CORO1C RNU4-32P SELPLG UBE3B ACACB CMKLR1 FICD ENSG00000274598
GH12G108663 1.9 FANTOM5 Ensembl ENCODE dbSUPER 19.2 +65.6 65580 5.8 HDGF PKNOX1 FOXA2 ARNT WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143 CORO1C SELPLG SSH1 SART3 ISCU ENSG00000257221 MVK ACACB RNU7-169P GC12P108645
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around CORO1C on UCSC Golden Path with GeneCards custom track

Promoters for CORO1C Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000057095 996 3601 HDGF HNRNPUL1 PKNOX1 MLX ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1

Genomic Location for CORO1C Gene

Chromosome:
12
Start:
108,645,109 bp from pter
End:
108,731,596 bp from pter
Size:
86,488 bases
Orientation:
Minus strand

Genomic View for CORO1C Gene

Genes around CORO1C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CORO1C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CORO1C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CORO1C Gene

Proteins for CORO1C Gene

  • Protein details for CORO1C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9ULV4-COR1C_HUMAN
    Recommended name:
    Coronin-1C
    Protein Accession:
    Q9ULV4
    Secondary Accessions:
    • A7MAP0
    • A7MAP1
    • B3KU12
    • Q9NSK5

    Protein attributes for CORO1C Gene

    Size:
    474 amino acids
    Molecular mass:
    53249 Da
    Quaternary structure:
    • Binds F-actin. Isoform 1 and isoform 2 appear as homotrimers, while isoform 3 seems to exist as monomers.
    SequenceCaution:
    • Sequence=CAB82406.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for CORO1C Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CORO1C Gene

Post-translational modifications for CORO1C Gene

  • Ubiquitination at isoforms=2, 3311 and isoforms=2, 3391
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for CORO1C Gene

Domains & Families for CORO1C Gene

Gene Families for CORO1C Gene

Suggested Antigen Peptide Sequences for CORO1C Gene

Graphical View of Domain Structure for InterPro Entry

Q9ULV4

UniProtKB/Swiss-Prot:

COR1C_HUMAN :
  • The C-terminal coiled-coil domain is essential for cortical membrane localization and oligomerization.
  • Belongs to the WD repeat coronin family.
Domain:
  • The C-terminal coiled-coil domain is essential for cortical membrane localization and oligomerization.
Family:
  • Belongs to the WD repeat coronin family.
genes like me logo Genes that share domains with CORO1C: view

Function for CORO1C Gene

Molecular function for CORO1C Gene

UniProtKB/Swiss-Prot Function:
May be involved in cytokinesis, motility, and signal transduction.
UniProtKB/Swiss-Prot Function:
Isoform 3: Involved in myogenic differentiation.

Gene Ontology (GO) - Molecular Function for CORO1C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003779 actin binding IEA --
GO:0005515 protein binding IPI 25074804
GO:0048365 Rac GTPase binding IEA --
GO:0051015 actin filament binding IMP 22364218
genes like me logo Genes that share ontologies with CORO1C: view
genes like me logo Genes that share phenotypes with CORO1C: view

Animal Models for CORO1C Gene

MGI Knock Outs for CORO1C:

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CORO1C Gene

Localization for CORO1C Gene

Subcellular locations from UniProtKB/Swiss-Prot for CORO1C Gene

Cell membrane. Cell projection, lamellipodium. Cytoplasm, cytoskeleton. Note=All isoforms localize in a diffuse and punctate pattern in the cytosol and are highly enriched in F-actin-rich areas. Isoform 3 colocalizes with the thin filaments of the sarcomere and with the postsynaptic area and the junctional sarcoplasm of motor end plates.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for CORO1C gene
Compartment Confidence
plasma membrane 5
cytoskeleton 5
cytosol 3
mitochondrion 2
nucleus 1

Gene Ontology (GO) - Cellular Components for CORO1C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
GO:0005886 plasma membrane IEA --
GO:0005925 NOT colocalizes_with focal adhesion IDA 19913511
GO:0015629 actin cytoskeleton TAS,IDA 22364218
genes like me logo Genes that share ontologies with CORO1C: view

Pathways & Interactions for CORO1C Gene

SuperPathways for CORO1C Gene

No Data Available

SIGNOR curated interactions for CORO1C Gene

Is activated by:

Gene Ontology (GO) - Biological Process for CORO1C Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001755 neural crest cell migration IMP 25074804
GO:0001932 regulation of protein phosphorylation IGI 19913511
GO:0001933 negative regulation of protein phosphorylation IMP 19913511
GO:0006909 phagocytosis TAS 9778037
GO:0007165 signal transduction TAS 9778037
genes like me logo Genes that share ontologies with CORO1C: view

No data available for Pathways by source for CORO1C Gene

Transcripts for CORO1C Gene

Unigene Clusters for CORO1C Gene

Coronin, actin binding protein, 1C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CORO1C Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11 ^ 12 ^ 13
SP1: - - - - - - -
SP2: - - - - -
SP3: - - - - -
SP4: - - -
SP5: -
SP6: - - - - -
SP7:

Relevant External Links for CORO1C Gene

GeneLoc Exon Structure for
CORO1C
ECgene alternative splicing isoforms for
CORO1C

Expression for CORO1C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for CORO1C Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for CORO1C Gene

This gene is overexpressed in Platelet (8.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CORO1C Gene



Protein tissue co-expression partners for CORO1C Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of CORO1C Gene:

CORO1C

SOURCE GeneReport for Unigene cluster for CORO1C Gene:

Hs.330384

mRNA Expression by UniProt/SwissProt for CORO1C Gene:

Q9ULV4-COR1C_HUMAN
Tissue specificity: Ubiquitous.

Evidence on tissue expression from TISSUES for CORO1C Gene

  • Lung(4.6)
  • Nervous system(4.5)
  • Liver(4.3)
  • Skin(3.5)
  • Intestine(2.3)
  • Kidney(2.2)
genes like me logo Genes that share expression patterns with CORO1C: view

Primer Products

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for CORO1C Gene

Orthologs for CORO1C Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for CORO1C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia CORO1C 34 35
  • 99.43 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia CORO1C 35
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CORO1C 34 35
  • 93.82 (n)
cow
(Bos Taurus)
Mammalia CORO1C 34 35
  • 92.12 (n)
rat
(Rattus norvegicus)
Mammalia Coro1c 34
  • 89.59 (n)
mouse
(Mus musculus)
Mammalia Coro1c 34 16 35
  • 88.68 (n)
oppossum
(Monodelphis domestica)
Mammalia CORO1C 35
  • 60 (a)
OneToOne
chicken
(Gallus gallus)
Aves CORO1C 34 35
  • 82.1 (n)
lizard
(Anolis carolinensis)
Reptilia CORO1C 35
  • 69 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia coro1c 34
  • 76.27 (n)
MGC76199 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.908 34
zebrafish
(Danio rerio)
Actinopterygii coro1ca 35
  • 81 (a)
OneToMany
coro1cb 34 35
  • 76.15 (n)
coro1c 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005891 34
  • 58.56 (n)
fruit fly
(Drosophila melanogaster)
Insecta coro 36 34
  • 57.69 (n)
worm
(Caenorhabditis elegans)
Secernentea cor-1 36 34
  • 55.85 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes CRN1 34 37
  • 49.83 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D02530g 34
  • 48.94 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AER114W 34
  • 48.7 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU00202 34
  • 51.64 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes crn1 34
  • 47.54 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.313 35
  • 42 (a)
OneToMany
Species where no ortholog for CORO1C was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for CORO1C Gene

ENSEMBL:
Gene Tree for CORO1C (if available)
TreeFam:
Gene Tree for CORO1C (if available)

Paralogs for CORO1C Gene

Paralogs for CORO1C Gene

Pseudogenes.org Pseudogenes for CORO1C Gene

genes like me logo Genes that share paralogs with CORO1C: view

Variants for CORO1C Gene

Sequence variations from dbSNP and Humsavar for CORO1C Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000004618 -- 108,728,119(+) TGGTG(C/T)AGCTG intron-variant
rs1000015425 -- 108,708,557(+) CCCAG(G/T)TTCAA intron-variant
rs1000048968 -- 108,687,456(+) CACTC(C/T)AGCCT intron-variant
rs1000054860 -- 108,671,333(+) AAAAG(-/AAAGA)AAAGG intron-variant
rs1000069126 -- 108,708,933(+) TTGGT(A/T)GAGAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CORO1C Gene

Variant ID Type Subtype PubMed ID
esv3549756 CNV deletion 23714750

Variation tolerance for CORO1C Gene

Residual Variation Intolerance Score: 21.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.53; 29.65% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CORO1C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
CORO1C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CORO1C Gene

Disorders for CORO1C Gene

MalaCards: The human disease database

(1) MalaCards diseases for CORO1C Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
coronin-1a deficiency
  • coronin 1a
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CORO1C

Genetic Association Database (GAD)
CORO1C
Human Genome Epidemiology (HuGE) Navigator
CORO1C
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CORO1C
genes like me logo Genes that share disorders with CORO1C: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CORO1C Gene

Publications for CORO1C Gene

  1. Structural and functional diversity of novel coronin 1C (CRN2) isoforms in muscle. (PMID: 19651142) Xavier C.P. … Clemen C.S. (J. Mol. Biol. 2009) 3 4 22 64
  2. Oligomerization, F-actin interaction, and membrane association of the ubiquitous mammalian coronin 3 are mediated by its carboxyl terminus. (PMID: 12377779) Spoerl Z. … Hasse A. (J. Biol. Chem. 2002) 3 4 22 64
  3. Isolation and chromosomal assignment of a novel human gene, CORO1C, homologous to coronin-like actin-binding proteins. (PMID: 10828594) Iizaka M. … Nakamura Y. (Cytogenet. Cell Genet. 2000) 3 4 22 64
  4. Coronin 1C negatively regulates cell-matrix adhesion and motility of intestinal epithelial cells. (PMID: 19913511) Samarin S.N. … Nusrat A. (Biochem. Biophys. Res. Commun. 2010) 3 22 64
  5. Risk of meningioma and common variation in genes related to innate immunity. (PMID: 20406964) Rajaraman P. … Inskip P.D. (Cancer Epidemiol. Biomarkers Prev. 2010) 3 46 64

Products for CORO1C Gene

Sources for CORO1C Gene

Content
Loading form....