Aliases for FGF9 Gene
Aliases for FGF9 Gene
External Ids for FGF9 Gene
- HGNC: 3687
- Entrez Gene: 2254
- Ensembl: ENSG00000102678
- OMIM: 600921
- UniProtKB: P31371
Previous GeneCards Identifiers for FGF9 Gene
- GC13P020225
- GC13P016225
- GC13P021175
- GC13P020044
- GC13P020045
- GC13P021144
- GC13P022245
- GC13P003046
Summaries for FGF9 Gene
-
The protein encoded by this gene is a member of the fibroblast growth factor (FGF) family. FGF family members possess broad mitogenic and cell survival activities, and are involved in a variety of biological processes, including embryonic development, cell growth, morphogenesis, tissue repair, tumor growth and invasion. This protein was isolated as a secreted factor that exhibits a growth-stimulating effect on cultured glial cells. In nervous system, this protein is produced mainly by neurons and may be important for glial cell development. Expression of the mouse homolog of this gene was found to be dependent on Sonic hedgehog (Shh) signaling. Mice lacking the homolog gene displayed a male-to-female sex reversal phenotype, which suggested a role in testicular embryogenesis. [provided by RefSeq, Jul 2008]
GeneCards Summary for FGF9 Gene
FGF9 (Fibroblast Growth Factor 9) is a Protein Coding gene. Diseases associated with FGF9 include Multiple Synostoses Syndrome 3 and Multiple Synostoses Syndrome. Among its related pathways are RET signaling and Downstream signaling of activated FGFR2. GO annotations related to this gene include growth factor activity and fibroblast growth factor receptor binding. An important paralog of this gene is FGF16.
UniProtKB/Swiss-Prot for FGF9 Gene
-
Plays an important role in the regulation of embryonic development, cell proliferation, cell differentiation and cell migration. May have a role in glial cell growth and differentiation during development, gliosis during repair and regeneration of brain tissue after damage, differentiation and survival of neuronal cells, and growth stimulation of glial tumors.
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FGF9 Gene
Genomics for FGF9 Gene
Regulatory Elements for FGF9 Gene
Enhancers for FGF9 Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH13G021635 | 1.1 | Ensembl ENCODE | 11.5 | -33.9 | -33870 | 3.1 | ZFP64 ZBTB40 RAD21 SCRT2 FOS ZNF654 REST ZFP69B NFIC SMARCA4 | FGF9 MICU2 RPS7P10 |
| GH13G021638 | 0.5 | ENCODE | 11.5 | -32.0 | -32045 | 0.5 | PRDM4 SP7 SPI1 ZNF558 ZNF18 | FGF9 RPS7P10 |
| GH13G021668 | 1.4 | FANTOM5 ENCODE | 3.4 | +2.1 | 2086 | 8.8 | PKNOX1 ARNT WRNIP1 SIN3A GLI4 ZNF48 GLIS2 ZNF207 ZNF143 ZNF263 | FGF9 RN7SL766P |
| GH13G021682 | 0.6 | ENCODE | 0.4 | +12.2 | 12232 | 1.3 | ZNF366 BHLHE40 ZNF629 FOS ZNF394 PRDM10 ZIC2 SP7 | FGF9 RN7SL766P |
| GH13G021738 | 0.5 | ENCODE | 0.2 | +68.0 | 68005 | 1.1 | ZNF366 ZNF512 PRDM1 | RN7SL766P FGF9 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around FGF9 on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the FGF9 gene promoter:
Regulatory Element Products
Genomic Location for FGF9 Gene
- Chromosome:
- 13
- Start:
- 21,671,076 bp from pter
- End:
- 21,704,501 bp from pter
- Size:
- 33,426 bases
- Orientation:
- Plus strand
Genomic View for FGF9 Gene
Genes around FGF9 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 13q12.11 by Ensembl
- 13q12.11 by Entrez Gene
- 13q12.11 by HGNC
FGF9 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for FGF9 Gene
Proteins for FGF9 Gene
-
Protein details for FGF9 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- P31371-FGF9_HUMAN
- Recommended name:
- Fibroblast growth factor 9
- Protein Accession:
- P31371
- A8K427
- Q3SY32
Protein attributes for FGF9 Gene
- Size:
- 208 amino acids
- Molecular mass:
- 23441 Da
- Quaternary structure:
-
- Monomer. Homodimer. Interacts with FGFR1, FGFR2, FGFR3 and FGFR4. Affinity between fibroblast growth factors (FGFs) and their receptors is increased by heparan sulfate glycosaminoglycans that function as coreceptors.
- Miscellaneous:
-
- Biochemical analysis of the Asn-99 mutation reveals a significantly impaired FGF signaling, as evidenced by diminished activity of the MAPK1/MAPK2 pathway and decreases CTNNB1 and MYC expression when compared with wild-type protein. Binding of mutant protein to the receptor FGFR3 is severely impaired, although homodimerization of mutant to itself or wild-type is not detectably affected, providing a basis for the observed defective FGF9 signaling.
Post-translational modifications for FGF9 Gene
- N-glycosylated.
- Three molecular species were found (30 kDa, 29 kDa and 25 kDa), cleaved at Leu-4, Val-13 and Ser-34 respectively. The smaller ones might be products of proteolytic digestion. Furthermore, there may be a functional signal sequence in the 30 kDa species which is uncleavable in the secretion step.
- Glycosylation at isoforms=79
- Modification sites at PhosphoSitePlus
Other Protein References for FGF9 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- R&D Systems Antibodies for FGF9 (FGF-9)
-
Custom Antibody ServicesOriGene Antibodies for FGF9
- Novus Biologicals Antibodies for FGF9
-
Cloud-Clone Corp. Antibodies for FGF9
- Invitrogen Antibodies for FGF9
- GeneTex FGF9 antibody for FGF9
-
Santa Cruz Biotechnology (SCBT) Antibodies for FGF9
Protein Products
- R&D Systems Proteins and Enzymes for FGF9 (FGF-9)
-
OriGene Purified Proteins for FGF9
- Search Origene for MassSpec and Protein Over-expression Lysates for FGF9
- Origene Custom Protein Services for FGF9
- Sino Biological Recombinant Proteins for FGF9
- Sino Biological Cell Lysates for FGF9
- ProSpec Recombinant Proteins for FGF9
-
Cloud-Clone Corp. Proteins for FGF9
- GeneTex Proteins for FGF9
Assay Products
-
Custom Assay ServicesOriGene ELISA Kits for FGF9
- R&D Systems ELISAs and other biochemical assays for FGF9 (FGF-9)
No data available for DME Specific Peptides for FGF9 Gene
Domains & Families for FGF9 Gene
Gene Families for FGF9 Gene
- HGNC:
Protein Domains for FGF9 Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for FGF9 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
P31371- Family:
-
- Belongs to the heparin-binding growth factors family.
Function for FGF9 Gene
Molecular function for FGF9 Gene
- GENATLAS Biochemistry:
- fibroblast growth factor 9
- UniProtKB/Swiss-Prot Function:
- Plays an important role in the regulation of embryonic development, cell proliferation, cell differentiation and cell migration. May have a role in glial cell growth and differentiation during development, gliosis during repair and regeneration of brain tissue after damage, differentiation and survival of neuronal cells, and growth stimulation of glial tumors.
LifeMap Function Summary for FGF9 Gene
During embryonic development, FGF9 as signaling molecule is secreted from the following cells
- Head Mesenchyme
- Bone
- Heart
It affects the following cells:
- Neural Tube
- Heart
- Head Mesenchyme
- Gonad
-
Bone
- Hypertrophic Chondrocytes (Vertebrae)
- Hypertrophic Chondrocytes (Stylopod Growth Plate)
- Hypertrophic Chondrocytes (Zeugopod Growth Plate)
- Hypertrophic Chondrocytes (Autopod Growth Plate)
- Hypertrophic Chondrocytes (Rib)
- Prehypertrophic Chondrocytes (Rib)
- Prehypertrophic Chondrocytes (Zeugopod Growth Plate)
- Prehypertrophic Chondrocytes (Autopod Growth Plate)
- Prehypertrophic Chondrocytes (Stylopod Growth Plate)
- Prehypertrophic Chondrocytes (Vertebrae)
- Testis
FGF9 as growth factor is involved in stem cell differentiation protocols towards the derivation of the following cells:
- Kidney
- Intermediate Mesoderm
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0004713 | protein tyrosine kinase activity | TAS | -- |
| GO:0005088 | Ras guanyl-nucleotide exchange factor activity | TAS | -- |
| GO:0005104 | fibroblast growth factor receptor binding | IEA | -- |
| GO:0008083 | growth factor activity | TAS,IEA | -- |
| GO:0008201 | heparin binding | IEA | -- |
Phenotypes for FGF9 Gene
- MGI mutant phenotypes for FGF9:
-
inferred from 7 alleles
- mortality/aging
- cellular phenotype
- behavior/neurological phenotype
- normal phenotype
- growth/size/body region phenotype
- muscle phenotype
- homeostasis/metabolism phenotype
- cardiovascular system phenotype
- respiratory system phenotype
- digestive/alimentary phenotype
- reproductive system phenotype
- endocrine/exocrine gland phenotype
- vision/eye phenotype
- hearing/vestibular/ear phenotype
- integument phenotype
- limbs/digits/tail phenotype
- skeleton phenotype
- craniofacial phenotype
- GenomeRNAi human phenotypes for FGF9:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for FGF9
-
-
ViGene Biosciences lentiviral particle packaged cDNA for FGF9 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for FGF9 gene
- Search ViGene Biosciences for FGF9
CRISPR Products
-
OriGene CRISPR knockouts for FGF9
-
Santa Cruz Biotechnology (SCBT) CRISPR for FGF9
- GenScript: Design CRISPR guide RNA sequences for FGF9
miRNA for FGF9 Gene
- miRTarBase miRNAs that target FGF9
-
- hsa-mir-182-5p (MIRT006823)
- hsa-mir-140-5p (MIRT007378)
- hsa-mir-26b-5p (MIRT029384)
- hsa-mir-26a-5p (MIRT053574)
- hsa-mir-599 (MIRT441711)
- hsa-mir-5007-3p (MIRT441712)
- hsa-mir-4662a-5p (MIRT441713)
- hsa-mir-4480 (MIRT441714)
- hsa-mir-1279 (MIRT441715)
- hsa-mir-3941 (MIRT608291)
- hsa-mir-4789-3p (MIRT608292)
- hsa-mir-603 (MIRT608293)
- hsa-mir-362-3p (MIRT608294)
- hsa-mir-8485 (MIRT608295)
- hsa-mir-329-3p (MIRT608296)
- hsa-mir-483-3p (MIRT613055)
- hsa-mir-6833-3p (MIRT632924)
- hsa-mir-4768-5p (MIRT632925)
- hsa-mir-6873-3p (MIRT632926)
- hsa-mir-6881-3p (MIRT632927)
- hsa-mir-433-3p (MIRT632928)
- hsa-mir-6895-3p (MIRT632929)
- hsa-mir-942-5p (MIRT632930)
- hsa-mir-6817-3p (MIRT632931)
- hsa-mir-7110-3p (MIRT632932)
- hsa-mir-6845-3p (MIRT632933)
- hsa-mir-4264 (MIRT632934)
- hsa-mir-877-3p (MIRT632935)
- hsa-mir-622 (MIRT632936)
miRNA Products
- Search ViGene Biosciences for FGF9
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FGF9
- Browse OriGene Inhibitory RNA Products For FGF9
-
ViGene Biosciences ready-to-package AAV shRNAs for FGF9 gene
Clone Products
- Sino Biological Human cDNA Clone for FGF9
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for FGF9
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for FGF9
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for FGF9
-
ViGene Biosciences adenoviral particle packaged cDNA for FGF9 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for FGF9 gene
-
ViGene Biosciences ready-to-package AAV shRNAs for FGF9 gene
No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for FGF9 Gene
Localization for FGF9 Gene
Subcellular locations from UniProtKB/Swiss-Prot for FGF9 Gene
- Secreted.
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| nucleus | 2 |
| cytosol | 2 |
| mitochondrion | 1 |
| peroxisome | 1 |
| endoplasmic reticulum | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005576 | extracellular region | TAS | -- |
| GO:0005604 | basement membrane | IEA | -- |
| GO:0005615 | extracellular space | IDA | 8321227 |
| GO:0005737 | cytoplasm | IEA | -- |
| GO:0070062 | extracellular exosome | IDA | 23376485 |
Pathways & Interactions for FGF9 Gene
| SuperPathway | Contained pathways | ||
|---|---|---|---|
| 1 | RET signaling |
.92
|
.92
|
| 2 | Downstream signaling of activated FGFR2 | ||
| 3 | Negative regulation of FGFR1 signaling | ||
| 4 | GAB1 signalosome |
.89
|
|
| 5 | Signaling by activated point mutants of FGFR3 | ||
Pathways by source for FGF9 Gene
1 BioSystems pathway for FGF9 Gene
108 Reactome pathways for FGF9 Gene
8 KEGG pathways for FGF9 Gene
1 GeneGo (Thomson Reuters) pathway for FGF9 Gene
5 Qiagen pathways for FGF9 Gene
Interacting Proteins for FGF9 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0000122 | negative regulation of transcription from RNA polymerase II promoter | IEA | -- |
| GO:0000165 | MAPK cascade | TAS | -- |
| GO:0001525 | angiogenesis | IEA | -- |
| GO:0001649 | osteoblast differentiation | IEA | -- |
| GO:0001654 | eye development | IEA | -- |
Transcripts for FGF9 Gene
mRNA/cDNA for FGF9 Gene
- (2) REFSEQ mRNAs :
- (6) Additional mRNA sequences :
- (38) Selected AceView cDNA sequences:
- (3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for FGF9 Gene
CRISPR Products
-
OriGene CRISPR knockouts for FGF9
-
Santa Cruz Biotechnology (SCBT) CRISPR for FGF9
- GenScript: Design CRISPR guide RNA sequences for FGF9
miRNA Products
- Search ViGene Biosciences for FGF9
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FGF9
- Browse OriGene Inhibitory RNA Products For FGF9
-
ViGene Biosciences ready-to-package AAV shRNAs for FGF9 gene
Clone Products
- Sino Biological Human cDNA Clone for FGF9
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for FGF9
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for FGF9
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
| ExUns: | 1 | ^ | 2a | · | 2b | · | 2c | ^ | 3a | · | 3b |
|---|---|---|---|---|---|---|---|---|---|---|---|
| SP1: | - | ||||||||||
| SP2: |
Expression for FGF9 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Bone (Muscoskeletal System)
- Chondrocytes Zeugopod Epiphyseal End
- Endochondral Preosteoblasts Stylopod Perichondrium
- Endochondral Preosteoblasts Zeugopod Perichondrium
- Presumptive Suture Cells Rostral Sutures
- Endochondral Preosteoblasts Rib
- Mesenchymal Stem Cells
-
Cartilage (Muscoskeletal System)
- Chondrocytes Zeugopod Epiphyseal End
- Chondrocytes Stylopod Epiphyseal End
- Chondrocytes Autopod Epiphyseal End
-
Ectoderm (Gastrulation Derivatives)
- Apical Ectodermal Ridge Cells Limb Ectoderm
- Surface Ectoderm Cells Surface Ectoderm
- Ectoderm Cells Branchial Arch 1
- Umbilical Cord (Extraembryonic Tissues)
- Neural Tube (Nervous System)
-
Testis (Reproductive System)
- Pre-Sertoli Cells Testis Cord
- Sertoli cells Seminiferous Tubules
-
Tooth (Integumentary System)
- Dental Placode Cells Dental Placode
- Inner Enamel Epithelial Cells Dental Enamel
-
Epithelial Cells
- Dental Placode Cells Dental Placode
- Inner Enamel Epithelial Cells Dental Enamel
-
Limb (Muscoskeletal System)
- Apical Ectodermal Ridge Cells Limb Ectoderm
- Limb Muscle Progenitor Cells Forelimb Myotome
-
Surface Ectoderm (Integumentary System)
- Surface Ectoderm Cells Surface Ectoderm
- Surface Ectoderm
- Placenta (Extraembryonic Tissues)
-
Heart (Cardiovascular System)
- Epicardial Progenitors Cells Epicardium
-
Epidermis (Integumentary System)
- Surface Ectoderm Cells Surface Ectoderm
-
Head Mesenchyme (Muscoskeletal System)
- Ectoderm Cells Branchial Arch 1
-
Skeletal Muscle (Muscoskeletal System)
- Limb Muscle Progenitor Cells Forelimb Myotome
- Brain (Nervous System)
- Uterus (Reproductive System)
- Neural Ectoderm (Nervous System)
mRNA differential expression in normal tissues according to GTEx for FGF9 Gene
This gene is overexpressed in Brain - Cerebellar Hemisphere (x7.8) and Brain - Cerebellum (x6.7).
NURSA nuclear receptor signaling pathways regulating expression of FGF9 Gene:
FGF9SOURCE GeneReport for Unigene cluster for FGF9 Gene:
Hs.111mRNA Expression by UniProt/SwissProt for FGF9 Gene:
P31371-FGF9_HUMAN
Tissue specificity:
Glial cells.
Evidence on tissue expression from TISSUES for FGF9 Gene
- Kidney(4.3)
- Lung(2.3)
- Nervous system(2.2)
Phenotype-based relationships between genes and organs from Gene ORGANizer for FGF9 Gene
Germ Layers:
- ectoderm
- endoderm
- mesoderm
Systems:
- integumentary
- nervous
- skeletal muscle
- skeleton
Organs:
Head and neck:
- brain
- cheek
- cranial nerve
- ear
- eye
- face
- head
- jaw
- lip
- mandible
- maxilla
- middle ear
- mouth
- nose
- outer ear
- skull
Thorax:
- chest wall
- clavicle
- rib
- rib cage
- sternum
Limb:
- ankle
- arm
- digit
- elbow
- femur
- fibula
- finger
- foot
- forearm
- hand
- hip
- humerus
- knee
- lower limb
- nail
- radius
- shin
- shoulder
- thigh
- tibia
- toe
- ulna
- upper limb
- wrist
General:
- peripheral nerve
- peripheral nervous system
- skin
- spinal column
- spinal cord
- vertebrae
Primer Products
-
OriGene qPCR primer pairs for FGF9
No data available for Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for FGF9 Gene
Orthologs for FGF9 Gene
This gene was present in the common ancestor of chordates.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | FGF9 34 35 |
|
||
| dog (Canis familiaris) |
Mammalia | FGF9 34 35 |
|
||
| oppossum (Monodelphis domestica) |
Mammalia | FGF9 35 |
|
OneToOne | |
| platypus (Ornithorhynchus anatinus) |
Mammalia | FGF9 35 |
|
OneToOne | |
| rat (Rattus norvegicus) |
Mammalia | Fgf9 34 |
|
||
| mouse (Mus musculus) |
Mammalia | Fgf9 34 16 35 |
|
||
| cow (Bos Taurus) |
Mammalia | FGF9 34 35 |
|
||
| chicken (Gallus gallus) |
Aves | FGF9 34 35 |
|
||
| lizard (Anolis carolinensis) |
Reptilia | FGF9 35 |
|
OneToOne | |
| tropical clawed frog (Silurana tropicalis) |
Amphibia | fgf9 34 |
|
||
| African clawed frog (Xenopus laevis) |
Amphibia | fgf9-A 34 |
|
||
| sea squirt (Ciona savignyi) |
Ascidiacea | CS-FGF9/16/20 35 |
|
OneToMany |
- Species where no ortholog for FGF9 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for FGF9 Gene
Paralogs for FGF9 Gene
(15) SIMAP similar genes for FGF9 Gene using alignment to 1 proteins:
Variants for FGF9 Gene
| SNP ID | Clin | Chr 13 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs121918322 | Pathogenic, Multiple synostoses syndrome 3 (SYNS3) [MIM:612961] | 21,681,060(+) | TATCA(A/G)TATAG | reference, missense | |
| rs111765283 | Likely benign | 21,703,039(+) | GCAAG(C/G)GAGAC | utr-variant-3-prime | |
| rs115025644 | Likely benign | 21,671,484(+) | AGCCC(A/G)TGCAT | utr-variant-5-prime | |
| rs143740722 | Likely benign | 21,703,760(+) | GTCTT(A/G)AAGTA | utr-variant-3-prime | |
| rs147999718 | Likely benign | 21,701,790(+) | GCGGC(C/G)TGATG | utr-variant-3-prime |
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| esv3396861 | CNV | duplication | 20981092 |
| nsv1071085 | CNV | deletion | 25765185 |
| nsv1078303 | OTHER | inversion | 25765185 |
| nsv1140246 | OTHER | inversion | 24896259 |
| nsv1151909 | OTHER | inversion | 26484159 |
| nsv509497 | CNV | insertion | 20534489 |
| nsv832560 | CNV | loss | 17160897 |
Residual Variation Intolerance Score:
39.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
0.80;
16.89% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for FGF9 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FGF9 Gene
Disorders for FGF9 Gene
(15) MalaCards diseases for FGF9 Gene - From: OMIM, ClinVar, GeneTests, Orphanet, Swiss-Prot, DISEASES, and GeneCards
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| multiple synostoses syndrome 3 |
|
|
| multiple synostoses syndrome |
|
|
| pleuropulmonary blastoma |
|
|
| myotonia congenita, recessive |
|
|
| apert syndrome |
|
|
Search FGF9 in MalaCards
View complete list of genes associated with diseases
UniProtKB/Swiss-Prot
FGF9_HUMAN- Multiple synostoses syndrome 3 (SYNS3) [MIM:612961]: A bone disease characterized by multiple progressive joint fusions that commonly involve proximal interphalangeal, tarsal-carpal, humeroradial and cervical spine joints. Additional features can include progressive conductive deafness and facial dysmorphism. {ECO:0000269 PubMed:19589401}. Note=The disease is caused by mutations affecting the gene represented in this entry.
Relevant External Links for FGF9
No data available for Genatlas for FGF9 Gene
Publications for FGF9 Gene
- Molecular cloning of a novel cytokine cDNA encoding the ninth member of the fibroblast growth factor family, which has a unique secretion property. (PMID: 8321227) Miyamoto M. … Kurokawa T. (Mol. Cell. Biol. 1993) 2 3 4 22 64
- Multiple synostoses syndrome is due to a missense mutation in exon 2 of FGF9 gene. (PMID: 19589401) Wu X.L. … Wang Z.G. (Am. J. Hum. Genet. 2009) 3 4 22 64
- Crystal structure of fibroblast growth factor 9 reveals regions implicated in dimerization and autoinhibition. (PMID: 11060292) Plotnikov A.N. … Mohammadi M. (J. Biol. Chem. 2001) 3 4 22 64
- Structure of fibroblast growth factor 9 shows a symmetric dimer with unique receptor- and heparin-binding interfaces. (PMID: 11223514) Hecht H.J. … Yayon A. (Acta Crystallogr. D 2001) 3 4 22 64
- L-type voltage-dependent calcium channel alpha subunit 1C is a novel candidate gene associated with secondary hyperparathyroidism: an application of haplotype-based analysis for multiple linked single nucleotide polymorphisms. (PMID: 20424473) Yokoyama K. … Hosoya T. (Nephron Clin Pract 2010) 3 46 64
Products for FGF9 Gene
- R&D Systems Antibodies for FGF9 (FGF-9)
- R&D Systems Proteins and Enzymes for FGF9 (FGF-9)
- R&D Systems ELISAs and other biochemical assays for FGF9 (FGF-9)
- Browse Primary Antibodies
- Browse Proteins and Enzymes
- Browse ELISAs
- Browse Activity Assays
- Browse cDNA Clones
- Browse Cell Culture Products
- Browse Cell Selection and Detection Kits
- Browse DNA Damage and Repair Kits
- Browse ELISpot/FluoroSpot Kits and Development Modules
- Browse Flow Cytometry Kits
- Browse Immunoprecipitation Assays
- Browse Luminex Assays
- Browse Peptides
- Browse Proteome Profiler Antibody Arrays
- Browse Small Molecules
- Custom Antibody ServicesOriGene Antibodies for FGF9
- Custom Assay ServicesOriGene ELISA Kits for FGF9
- OriGene Purified Proteins for FGF9
- Search Origene for MassSpec and Protein Over-expression Lysates for FGF9
- Origene Custom Protein Services for FGF9
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for FGF9
- Browse OriGene Inhibitory RNA Products For FGF9
- OriGene qPCR primer pairs for FGF9
- OriGene CRISPR knockouts for FGF9
- OriGene ORF clones in human for FGF9
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For FGF9
- GenScript: Next-day shipping cDNA ORF clone for FGF9 in any vector
- GenScript Purified and Recombinant Proteins for FGF9
- GenScript Custom Purified and Recombinant Proteins Services for FGF9
- GenScript Custom Assay Services for FGF9
- GenScript Custom overexpressing Cell Line Services for FGF9
- GenScript: Design CRISPR guide RNA sequences for FGF9
- Design optimal peptide antigens
- CloneReady with Over 120,000 Genes
- Gene Synthesis: Any Gene in Any Vector
- Vector-based siRNA and miRNA, Ready for Transfection
- Gene Mutant Library, Variants up to 10^11
- Plasmid Preparation
- GenScript Custom Peptide Services for FGF9
- Sino Biological Human cDNA Clone for FGF9
- Sino Biological Recombinant Proteins for FGF9
- Sino Biological Cell Lysates for FGF9
- Sino Biological Antibodies
- Sino Biological ELISA Kits and Pair Sets
- Sino Biological Cell Lysates
- Sino Biological qPCR Primers
- Sino Biological CRO Services for Proteins, Antibodies and Genes
- Sino Biological Transfection Reagents
- Novus Biologicals Antibodies for FGF9
- Novus Biologicals proteins and lysates for FGF9
- Novus Biologicals
- Novus Biologicals Tissue Microarrays
- ProSpec Recombinant Proteins for FGF9
- Cloud-Clone Corp. Antibodies for FGF9
- Cloud-Clone Corp. Proteins for FGF9
- Invitrogen Antibodies for FGF9
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- GeneTex FGF9 antibody for FGF9
- GeneTex Proteins for FGF9
- ViGene Biosciences adenoviral particle packaged cDNA for FGF9 gene
- ViGene Biosciences lentiviral particle packaged cDNA for FGF9 gene
- ViGene Biosciences ready-to-package AAV shRNAs for FGF9 gene
- Search ViGene Biosciences for FGF9
- Santa Cruz Biotechnology (SCBT) Antibodies for FGF9
- Search Santa Cruz Biotechnology (SCBT) for FGF9 siRNA/shRNA
- Santa Cruz Biotechnology (SCBT) CRISPR for FGF9
- Horizon Cell Lines for FGF9
- Cyagen custom Knockout/knockin (KOKI) mouse models for FGF9
- VectorBuilder custom plasmid, inducible vectors for FGF9
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for FGF9
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for FGF9 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
- (93) ESI-BIO
- (94) RefSeq
- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
- (99) Illumina
- (100) COMPARTMENTS
- (101) HOMER
- (102) PaxDb
- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
- (113) Taconic Biosciences
- (114) GTEx
- (115) ProteomicsDB
- (116) SCBT
- (117) DGIdb
- (118) ClinicalTrials
- (119) FDA Approved Drugs
- (120) RVIS
- (121) SIGNOR
- (122) diseasecard
- (123) NIH Rare Diseases
- (124) Orphanet
- (125) UMLS
- (126) GTR
- (127) Disease Ontology
- (128) Genetics Home Reference
- (129) MeSH
- (130) MedlinePlus
- (131) CDC
- (132) NINDS
- (133) NCBI Bookshelf
- (134) ClinVar
- (135) Gene Damage Index
- (136) ViGene Biosciences
- (137) HPO
- (138) UDN
- (139) VISTA
- (140) FANTOM5
- (141) ENCODE
- (142) ProSci
- (143) Horizon
- (144) NURSA
- (145) IID
- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
- (149) BRCA Exchange
- (150) St John's Lab
- (151) CIViC
- (152) ProteoGenix
- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer