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Aliases for ALDH3A1 Gene

Aliases for ALDH3A1 Gene

  • Aldehyde Dehydrogenase 3 Family, Member A1 2 3
  • ALDH3 3 4 6
  • EC 1.2.1.5 4 63
  • ALDHIII 3 4
  • Aldehyde Dehydrogenase, Dimeric NADP-Preferring 3
  • Aldehyde Dehydrogenase Family 3 Member A1 4
  • Aldehyde Dehydrogenase Isozyme 3 3
  • Aldehyde Dehydrogenase Type III 3
  • Stomach Aldehyde Dehydrogenase 3
  • Aldehyde Dehydrogenase 3 4
  • Dimeric NADP-Preferring 2
  • Aldehyde Dehydrogenase 2
  • EC 1.2.1 63

External Ids for ALDH3A1 Gene

Previous Symbols for ALDH3A1 Gene

  • ALDH3

Summaries for ALDH3A1 Gene

Entrez Gene Summary for ALDH3A1 Gene

  • Aldehyde dehydrogenases oxidize various aldehydes to the corresponding acids. They are involved in the detoxification of alcohol-derived acetaldehyde and in the metabolism of corticosteroids, biogenic amines, neurotransmitters, and lipid peroxidation. The enzyme encoded by this gene forms a cytoplasmic homodimer that preferentially oxidizes aromatic and medium-chain (6 carbons or more) saturated and unsaturated aldehyde substrates. It is thought to promote resistance to UV and 4-hydroxy-2-nonenal-induced oxidative damage in the cornea. The gene is located within the Smith-Magenis syndrome region on chromosome 17. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Sep 2008]

GeneCards Summary for ALDH3A1 Gene

ALDH3A1 (Aldehyde Dehydrogenase 3 Family, Member A1) is a Protein Coding gene. Diseases associated with ALDH3A1 include sjogren-larsson syndrome and breast adenocarcinoma. Among its related pathways are AhR pathway (WikiPathways) and Metabolism. GO annotations related to this gene include aldehyde dehydrogenase (NAD) activity and 3-chloroallyl aldehyde dehydrogenase activity. An important paralog of this gene is ALDH3B2.

UniProtKB/Swiss-Prot for ALDH3A1 Gene

  • ALDHs play a major role in the detoxification of alcohol-derived acetaldehyde. They are involved in the metabolism of corticosteroids, biogenic amines, neurotransmitters, and lipid peroxidation. This protein preferentially oxidizes aromatic aldehyde substrates. It may play a role in the oxidation of toxic aldehydes

Gene Wiki entry for ALDH3A1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ALDH3A1 Gene

Genomics for ALDH3A1 Gene

Genomic Location for ALDH3A1 Gene

Start:
19,737,984 bp from pter
End:
19,748,943 bp from pter
Size:
10,960 bases
Orientation:
Minus strand

Genomic View for ALDH3A1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for ALDH3A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ALDH3A1 Gene

Regulatory Elements for ALDH3A1 Gene

Transcription factor binding sites by QIAGEN in the ALDH3A1 gene promoter:

Proteins for ALDH3A1 Gene

  • Protein details for ALDH3A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P30838-AL3A1_HUMAN
    Recommended name:
    Aldehyde dehydrogenase, dimeric NADP-preferring
    Protein Accession:
    P30838
    Secondary Accessions:
    • A8K828
    • Q9BT37

    Protein attributes for ALDH3A1 Gene

    Size:
    453 amino acids
    Molecular mass:
    50395 Da
    Quaternary structure:
    • Homodimer.

    Three dimensional structures from OCA and Proteopedia for ALDH3A1 Gene

neXtProt entry for ALDH3A1 Gene

Proteomics data for ALDH3A1 Gene at MOPED

Post-translational modifications for ALDH3A1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Domains for ALDH3A1 Gene

Gene Families for ALDH3A1 Gene

HGNC:
  • ALDH :Aldehyde dehydrogenases

Graphical View of Domain Structure for InterPro Entry

P30838

UniProtKB/Swiss-Prot:

AL3A1_HUMAN
Family:
  • Belongs to the aldehyde dehydrogenase family.:
    • P30838
genes like me logo Genes that share domains with ALDH3A1: view

Function for ALDH3A1 Gene

Molecular function for ALDH3A1 Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties: Kinetic parameters: Note=Has a high Km for acetaldehyde.;
UniProtKB/Swiss-Prot CatalyticActivity: An aldehyde + NAD(P)(+) + H(2)O = a carboxylate + NAD(P)H
UniProtKB/Swiss-Prot Function: ALDHs play a major role in the detoxification of alcohol-derived acetaldehyde. They are involved in the metabolism of corticosteroids, biogenic amines, neurotransmitters, and lipid peroxidation. This protein preferentially oxidizes aromatic aldehyde substrates. It may play a role in the oxidation of toxic aldehydes

Enzyme Numbers (IUBMB) for ALDH3A1 Gene

Gene Ontology (GO) - Molecular Function for ALDH3A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003995 acyl-CoA dehydrogenase activity --
GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IBA --
GO:0004029 aldehyde dehydrogenase (NAD) activity IDA 1737758
GO:0004030 aldehyde dehydrogenase [NAD(P)+] activity IEA --
GO:0008106 alcohol dehydrogenase (NADP+) activity IDA 1737758
genes like me logo Genes that share ontologies with ALDH3A1: view

Phenotypes for ALDH3A1 Gene

MGI mutant phenotypes for ALDH3A1:
inferred from 1 alleles
GenomeRNAi human phenotypes for ALDH3A1:
genes like me logo Genes that share phenotypes with ALDH3A1: view

Animal Models for ALDH3A1 Gene

MGI Knock Outs for ALDH3A1:

miRNA for ALDH3A1 Gene

miRTarBase miRNAs that target ALDH3A1

No data available for Transcription Factor Targeting and HOMER Transcription for ALDH3A1 Gene

Localization for ALDH3A1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ALDH3A1 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for ALDH3A1 Gene COMPARTMENTS Subcellular localization image for ALDH3A1 gene
Compartment Confidence
cytosol 4
endoplasmic reticulum 4
mitochondrion 2
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for ALDH3A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 22664934
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
GO:0005783 endoplasmic reticulum IDA --
GO:0005829 cytosol ISS --
genes like me logo Genes that share ontologies with ALDH3A1: view

Pathways for ALDH3A1 Gene

genes like me logo Genes that share pathways with ALDH3A1: view

Pathways by source for ALDH3A1 Gene

Gene Ontology (GO) - Biological Process for ALDH3A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001666 response to hypoxia IEA --
GO:0006081 cellular aldehyde metabolic process IDA 1737758
GO:0007568 aging IEA --
GO:0007584 response to nutrient IEA --
GO:0008152 metabolic process --
genes like me logo Genes that share ontologies with ALDH3A1: view

Compounds for ALDH3A1 Gene

(17) HMDB Compounds for ALDH3A1 Gene

Compound Synonyms Cas Number PubMed IDs
3,4-Dihydroxybenzeneacetic acid
  • (3,4-Dihydroxyphenyl)acetate
102-32-9
3,4-Dihydroxymandelaldehyde
  • 3,4-Dihydroxyphenylglycolaldehyde
13023-73-9
3,4-Dihydroxymandelic acid
  • 3,4 Dihydroxymandelate
775-01-9
3,4-Dihydroxyphenylacetaldehyde
  • Protocatechuatealdehyde
5707-55-1
3-Methoxy-4-hydroxyphenylglycolaldehyde
  • a,4-dihydroxy-3-methoxy-Benzeneacetaldehyde
17592-23-3

(2) Drugbank Compounds for ALDH3A1 Gene

Compound Synonyms Cas Number Type Actions PubMed IDs
NADH
  • beta-DPNH
606-68-8 target
Nicotinamide-Adenine-Dinucleotide
53-84-9 target

(30) Novoseek inferred chemical compound relationships for ALDH3A1 Gene

Compound -log(P) Hits PubMed IDs
4-hydroxy-2-oxovalerate 92.1 6
acetaldehyde 88.2 45
aldophosphamide 87.2 3
mafosfamide 84 5
carboxyphosphamide 80.6 1
genes like me logo Genes that share compounds with ALDH3A1: view

Transcripts for ALDH3A1 Gene

Unigene Clusters for ALDH3A1 Gene

Aldehyde dehydrogenase 3 family, member A1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ALDH3A1 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6a · 6b · 6c · 6d ^ 7 ^ 8a · 8b · 8c · 8d · 8e ^ 9a · 9b ^ 10 ^ 11a · 11b · 11c · 11d ^
SP1: - - - - - - - - - -
SP2: - - - - - - - - - -
SP3: - - - - - - - - - -
SP4: - - - - - - - - - - - -
SP5: - - - - - - - - - -
SP6: - -
SP7: - -
SP8: - - - - - -
SP9: - - - - - - - - -
SP10: - - - -
SP11: - - - - -
SP12: - -
SP13:
SP14: - - - - - - - - - - -
SP15: - - - - - - -
SP16: - - - - - - - -
SP17: - - -
SP18: - - -
SP19:
SP20: - -

ExUns: 12a · 12b · 12c ^ 13a · 13b · 13c ^ 14a · 14b ^ 15 ^ 16 ^ 17a · 17b
SP1: - - -
SP2: - - - -
SP3: - - - - - -
SP4: - - -
SP5: - - -
SP6: - - -
SP7: -
SP8:
SP9:
SP10:
SP11:
SP12: -
SP13: -
SP14:
SP15:
SP16:
SP17:
SP18:
SP19:
SP20:

Relevant External Links for ALDH3A1 Gene

GeneLoc Exon Structure for
ALDH3A1
ECgene alternative splicing isoforms for
ALDH3A1

Expression for ALDH3A1 Gene

mRNA expression in normal human tissues for ALDH3A1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for ALDH3A1 Gene

This gene is overexpressed in Esophagus - Mucosa (28.6), Stomach (10.1), and Minor Salivary Gland (4.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for ALDH3A1 Gene

SOURCE GeneReport for Unigene cluster for ALDH3A1 Gene Hs.531682

mRNA Expression by UniProt/SwissProt for ALDH3A1 Gene

P30838-AL3A1_HUMAN
Tissue specificity: High levels in stomach, esophagus and lung; low level in the liver and kidney
genes like me logo Genes that share expressions with ALDH3A1: view

Orthologs for ALDH3A1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ALDH3A1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ALDH3A1 35
  • 99.12 (n)
  • 98.68 (a)
ALDH3A1 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia ALDH3A1 35
  • 86.53 (n)
  • 86.98 (a)
ALDH3A1 36
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ALDH3A1 35
  • 88.3 (n)
  • 88.52 (a)
ALDH3A1 36
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Aldh3a1 35
  • 81.24 (n)
  • 80.35 (a)
Aldh3a1 16
Aldh3a1 36
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 78 (a)
OneToMany
-- 36
  • 75 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia ALDH3A1 36
  • 79 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Aldh3a1 35
  • 82.12 (n)
  • 81.68 (a)
chicken
(Gallus gallus)
Aves ALDH3A2 36
  • 61 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 56 (a)
OneToMany
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.864 35
zebrafish
(Danio rerio)
Actinopterygii aldh3a1 36
  • 49 (a)
ManyToMany
aldh3a2a 36
  • 53 (a)
ManyToMany
aldh3a2b 36
  • 54 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta Aldh-III 36
  • 41 (a)
OneToMany
Aldh-III 37
  • 50 (a)
worm
(Caenorhabditis elegans)
Secernentea alh-4 36
  • 46 (a)
ManyToMany
alh-5 36
  • 49 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes HFD1 36
  • 30 (a)
OneToMany
HFD1 38
thale cress
(Arabidopsis thaliana)
eudicotyledons ALDH3H1 35
  • 48.75 (n)
  • 47.61 (a)
barley
(Hordeum vulgare)
Liliopsida Hv.4281 35
rice
(Oryza sativa)
Liliopsida Os.5577 35
Os11g0186200 35
  • 51.4 (n)
  • 47.62 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6683 36
  • 43 (a)
ManyToMany
CSA.9635 36
  • 40 (a)
ManyToMany
Species with no ortholog for ALDH3A1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for ALDH3A1 Gene

ENSEMBL:
Gene Tree for ALDH3A1 (if available)
TreeFam:
Gene Tree for ALDH3A1 (if available)

Paralogs for ALDH3A1 Gene

Paralogs for ALDH3A1 Gene

Pseudogenes.org Pseudogenes for ALDH3A1 Gene

genes like me logo Genes that share paralogs with ALDH3A1: view

Variants for ALDH3A1 Gene

Sequence variations from dbSNP and Humsavar for ALDH3A1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs887239 -- 19,743,480(-) CACTC(C/T)GGCTC intron-variant, upstream-variant-2KB
rs887240 -- 19,742,801(-) ATGTG(C/T)CCGTG intron-variant, reference, missense
rs887241 - 19,742,625(-) GGAAC(G/T)CAGTG missense, reference
rs917520 -- 19,738,134(-) AGAAT(C/T)GCTCC utr-variant-3-prime, reference, missense
rs1042172 -- 19,745,095(-) CGCCC(C/G)CGCCG missense, reference, utr-variant-5-prime, intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ALDH3A1 Gene

Variant ID Type Subtype PubMed ID
dgv3101n71 CNV Loss 21882294
nsv526290 CNV Loss 19592680
nsv457704 CNV Loss 19166990
nsv470582 CNV Loss 18288195

Relevant External Links for ALDH3A1 Gene

HapMap Linkage Disequilibrium report
ALDH3A1
Locus Specific Mutation Databases (LSDB)
ALDH3A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ALDH3A1 Gene

Disorders for ALDH3A1 Gene

(7) Novoseek inferred disease relationships for ALDH3A1 Gene

Disease -log(P) Hits PubMed IDs
breast cancer metastatic 26.9 5
hepatocellular carcinoma 20.8 3
adenocarcinoma 19.9 6
cancer 10.4 4
breast cancer 0 3

Relevant External Links for ALDH3A1

Genetic Association Database (GAD)
ALDH3A1
Human Genome Epidemiology (HuGE) Navigator
ALDH3A1
genes like me logo Genes that share disorders with ALDH3A1: view

No data available for UniProtKB/Swiss-Prot for ALDH3A1 Gene

Publications for ALDH3A1 Gene

  1. Human stomach aldehyde dehydrogenase cDNA and genomic cloning, primary structure, and expression in Escherichia coli. (PMID: 1737758) Hsu L.C. … Yoshida A. (J. Biol. Chem. 1992) 2 3 4 23
  2. Human stomach aldehyde dehydrogenase, ALDH3. (PMID: 8493892) Hsu L.C. … Yoshida A. (Adv. Exp. Med. Biol. 1993) 3 4 23
  3. Mutations associated with Sjogren-Larsson syndrome. (PMID: 9250352) Tsukamoto N. … Yoshida A. (Ann. Hum. Genet. 1997) 3 4 23
  4. Influence of polymorphisms of drug metabolizing enzymes (CYP2B6, CYP2C9, CYP2C19, CYP3A4, CYP3A5, GSTA1, GSTP1, ALDH1A1 and ALDH3A1) on the pharmacokinetics of cyclophosphamide and 4-hydroxycyclophosphamide. (PMID: 18496131) Ekhart C. … Huitema A.D. (Pharmacogenet. Genomics 2008) 3 23 48
  5. Relations between polymorphisms in drug-metabolising enzymes and toxicity of chemotherapy with cyclophosphamide, thiotepa and carboplatin. (PMID: 18854779) Ekhart C. … Huitema A.D. (Pharmacogenet. Genomics 2008) 3 23 48

Products for ALDH3A1 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • Pathway & Disease-focused RT² Profiler PCR Arrays
  • QIAGEN qRT-PCR Assays for microRNAs that regulate ALDH3A1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for ALDH3A1
    • Block miRNA regulation of ALDH3A1 using miScript Target Protectors

    Sources for ALDH3A1 Gene

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