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Aliases for MUC20 Gene

Aliases for MUC20 Gene

  • Mucin 20, Cell Surface Associated 2 3
  • MUC-20 3 4
  • Transmembrane Mucin MUC20S 3
  • Mucin-20 3
  • KIAA1359 4

External Ids for MUC20 Gene

Previous GeneCards Identifiers for MUC20 Gene

  • GC03P196775
  • GC03P196937
  • GC03P195447
  • GC03P192723
  • GC03P195343

Summaries for MUC20 Gene

Entrez Gene Summary for MUC20 Gene

  • This gene encodes a member of the mucin protein family. Mucins are high molecular weight glycoproteins secreted by many epithelial tissues to form an insoluble mucous barrier. The C-terminus of this family member associates with the multifunctional docking site of the MET proto-oncogene and suppresses activation of some downstream MET signaling cascades. The protein features a mucin tandem repeat domain that varies between two and six copies in most individuals. Multiple variants encoding different isoforms have been found for this gene. A related pseudogene, which is also located on chromosome 3, has been identified. [provided by RefSeq, Apr 2014]

UniProtKB/Swiss-Prot for MUC20 Gene

  • May regulate MET signaling cascade. Seems to decrease hepatocyte growth factor (HGF)-induced transient MAPK activation. Blocks GRB2 recruitment to MET thus suppressing the GRB2-RAS pathway. Inhibits HGF-induced proliferation of MMP1 and MMP9 expression.

Gene Wiki entry for MUC20 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MUC20 Gene

Genomics for MUC20 Gene

Regulatory Elements for MUC20 Gene

Genomic Location for MUC20 Gene

Start:
195,720,882 bp from pter
End:
195,741,123 bp from pter
Size:
20,242 bases
Orientation:
Plus strand

Genomic View for MUC20 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MUC20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for MUC20 Gene

  • Protein details for MUC20 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N307-MUC20_HUMAN
    Recommended name:
    Mucin-20
    Protein Accession:
    Q8N307
    Secondary Accessions:
    • Q6UX97
    • Q76I83
    • Q76I85
    • Q86ST8
    • Q8NBY6
    • Q96KA1
    • Q9P2I8

    Protein attributes for MUC20 Gene

    Size:
    709 amino acids
    Molecular mass:
    71982 Da
    Quaternary structure:
    • Interacts with MET; oligomerization increases affinity for MET.
    SequenceCaution:
    • Sequence=AAQ88814.1; Type=Frameshift; Positions=638; Evidence={ECO:0000305}; Sequence=BAA92597.1; Type=Miscellaneous discrepancy; Note=Dubious isoform. Probable cloning artifact.; Evidence={ECO:0000305};

    Alternative splice isoforms for MUC20 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MUC20 Gene

Proteomics data for MUC20 Gene at MOPED

Post-translational modifications for MUC20 Gene

  • Glycosylation at Ser69, Thr70, Thr80, Asn423, Ser547, Ser553, Ser558, Asn616, Asn622, Thr648, Thr651, and Thr652
  • Modification sites at PhosphoSitePlus

Other Protein References for MUC20 Gene

No data available for DME Specific Peptides for MUC20 Gene

Domains for MUC20 Gene

Gene Families for MUC20 Gene

HGNC:

Protein Domains for MUC20 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for MUC20 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MUC20: view

No data available for UniProtKB/Swiss-Prot for MUC20 Gene

Function for MUC20 Gene

Molecular function for MUC20 Gene

UniProtKB/Swiss-Prot Function: May regulate MET signaling cascade. Seems to decrease hepatocyte growth factor (HGF)-induced transient MAPK activation. Blocks GRB2 recruitment to MET thus suppressing the GRB2-RAS pathway. Inhibits HGF-induced proliferation of MMP1 and MMP9 expression.

Gene Ontology (GO) - Molecular Function for MUC20 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with MUC20: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MUC20 Gene

Localization for MUC20 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MUC20 Gene

Secreted. Apical cell membrane. Basolateral cell membrane. Cell projection, microvillus membrane.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MUC20 Gene COMPARTMENTS Subcellular localization image for MUC20 gene
Compartment Confidence
plasma membrane 5
golgi apparatus 4
extracellular 3
cytosol 1
endoplasmic reticulum 1
mitochondrion 1
nucleus 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for MUC20 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005796 Golgi lumen TAS --
GO:0009925 basal plasma membrane IDA 15314156
GO:0016324 apical plasma membrane IEA --
GO:0031528 microvillus membrane IEA --
genes like me logo Genes that share ontologies with MUC20: view

Pathways for MUC20 Gene

genes like me logo Genes that share pathways with MUC20: view

Gene Ontology (GO) - Biological Process for MUC20 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000187 activation of MAPK activity IEA --
GO:0006493 protein O-linked glycosylation TAS --
GO:0016266 O-glycan processing TAS --
GO:0043687 post-translational protein modification TAS --
GO:0044267 cellular protein metabolic process TAS --
genes like me logo Genes that share ontologies with MUC20: view

Transcripts for MUC20 Gene

Unigene Clusters for MUC20 Gene

Mucin 20, cell surface associated:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MUC20 Gene

No ASD Table

Relevant External Links for MUC20 Gene

GeneLoc Exon Structure for
MUC20
ECgene alternative splicing isoforms for
MUC20

Expression for MUC20 Gene

mRNA expression in normal human tissues for MUC20 Gene

mRNA differential expression in normal tissues according to GTEx for MUC20 Gene

This gene is overexpressed in Kidney - Cortex (5.1), Esophagus - Mucosa (4.3), and Minor Salivary Gland (4.3).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for MUC20 Gene

SOURCE GeneReport for Unigene cluster for MUC20 Gene Hs.308992

mRNA Expression by UniProt/SwissProt for MUC20 Gene

Q8N307-MUC20_HUMAN
Tissue specificity: Highly expressed in kidney, moderately in placenta, lung, prostate, liver, and digestive system. In the kidney, localized in the proximal tubules but not in the glomerulus or distal tubules. Detected in most of the male urogenital tract epithelia, with the exception of epididymis.
genes like me logo Genes that share expressions with MUC20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for MUC20 Gene

Orthologs for MUC20 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MUC20 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC750356 35
  • 95.51 (n)
  • 92.24 (a)
cow
(Bos Taurus)
Mammalia MUC20 36
  • 45 (a)
OneToOne
dog
(Canis familiaris)
Mammalia MUC20 35
  • 72.9 (n)
  • 58.66 (a)
MUC20 36
  • 51 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Muc20 35
  • 63.39 (n)
  • 45.45 (a)
Muc20 16
Muc20 36
  • 32 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MUC20 36
  • 18 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Muc20 35
  • 63.92 (n)
  • 47.87 (a)
Species with no ortholog for MUC20:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MUC20 Gene

ENSEMBL:
Gene Tree for MUC20 (if available)
TreeFam:
Gene Tree for MUC20 (if available)

Paralogs for MUC20 Gene

genes like me logo Genes that share paralogs with MUC20: view

No data available for Paralogs for MUC20 Gene

Variants for MUC20 Gene

Polymorphic Variants from UniProtKB/Swiss-Prot for MUC20 Gene

Q8N307-MUC20_HUMAN
The region encoding the tandem repeats is highly polymorphic. Divergence of the number of tandem repeats was seen in different cDNA libraries

Sequence variations from dbSNP and Humsavar for MUC20 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs1862 -- 195,729,966(-) GGCTC(C/T)AGGAG intron-variant
rs1863 -- 195,729,955(-) TCACA(A/T)GTTTA intron-variant
rs712010 -- 195,733,416(+) TATGT(A/G)TGGGG utr-variant-3-prime
rs712011 -- 195,733,365(+) CCCCT(A/G)ACCCC utr-variant-3-prime
rs1060477 -- 195,729,871(+) GAATT(A/G)GGAGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MUC20 Gene

Variant ID Type Subtype PubMed ID
nsv878138 CNV Gain 21882294
dgv1549e1 CNV Complex 17122850
nsv428430 CNV Gain+Loss 18775914
nsv878146 CNV Loss 21882294
dgv5366n71 CNV Gain 21882294
nsv820189 CNV Gain 19587683
esv2726477 CNV Deletion 23290073
nsv822408 CNV Gain 20364138
dgv905e199 CNV Deletion 23128226
essv12347 CNV CNV 17122850
dgv1551e1 CNV Complex 17122850
dgv1552e1 CNV Complex 17122850
dgv1553e1 CNV Complex 17122850
esv22821 CNV Gain+Loss 19812545
nsv878154 CNV Loss 21882294
dgv1554e1 CNV Complex 17122850
dgv5368n71 CNV Gain 21882294
esv2429380 CNV Gain 19546169
nsv469606 CNV Complex 16826518
nsv471621 CNV Gain+Loss 15918152
esv32809 CNV Gain+Loss 17666407
nsv829825 CNV Loss 17160897
dgv5369n71 CNV Loss 21882294
nsv436932 CNV Loss 16327808
nsv878159 CNV Gain 21882294
dgv1555e1 CNV Complex 17122850
esv2751988 CNV Gain 17911159
nsv822410 CNV Loss 20364138
nsv436752 CNV Insertion 17901297
nsv878160 CNV Gain 21882294
nsv471428 CNV Duplication 19718026
esv2726488 CNV Deletion 23290073
nsv237976 CNV Loss 16902084
nsv236267 CNV Loss 16902084
esv2726489 CNV Deletion 23290073
dgv850n67 CNV Loss 20364138
nsv820762 CNV Duplication 20802225
nsv819699 CNV Loss 19587683
nsv822413 CNV Gain 20364138
nsv821242 CNV Duplication 20802225
dgv906e199 CNV Deletion 23128226
esv2726490 CNV Deletion 23290073
nsv878161 CNV Loss 21882294

Relevant External Links for MUC20 Gene

HapMap Linkage Disequilibrium report
MUC20

Disorders for MUC20 Gene

Relevant External Links for MUC20

Genetic Association Database (GAD)
MUC20
Human Genome Epidemiology (HuGE) Navigator
MUC20
genes like me logo Genes that share disorders with MUC20: view

No data available for UniProtKB/Swiss-Prot for MUC20 Gene

Publications for MUC20 Gene

  1. MUC20 suppresses the hepatocyte growth factor-induced Grb2-Ras pathway by binding to a multifunctional docking site of met. (PMID: 15314156) Higuchi T. … Nakamura M. (Mol. Cell. Biol. 2004) 3 4 23
  2. Molecular cloning, genomic structure, and expression analysis of MUC20, a novel mucin protein, up-regulated in injured kidney. (PMID: 14565953) Higuchi T. … Nakamura M. (J. Biol. Chem. 2004) 2 3 4
  3. Tandem repeats polymorphism of MUC20 is an independent factor for the progression of immunoglobulin A nephropathy. (PMID: 16508246) Li G. … Wang H. (Am. J. Nephrol. 2006) 3 4 48
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4

Products for MUC20 Gene

Sources for MUC20 Gene

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