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Aliases for EGR3 Gene

Aliases for EGR3 Gene

  • Early Growth Response 3 2 3
  • Zinc Finger Protein Pilot 2 3 4
  • EGR-3 3 4
  • PILOT 3 4
  • Early Growth Response Protein 3 3

External Ids for EGR3 Gene

Previous GeneCards Identifiers for EGR3 Gene

  • GC08P022058
  • GC08M022898
  • GC08M022365
  • GC08M022567
  • GC08M022601
  • GC08M022545
  • GC08M021088

Summaries for EGR3 Gene

Entrez Gene Summary for EGR3 Gene

  • This gene encodes a transcriptional regulator that belongs to the EGR family of C2H2-type zinc-finger proteins. It is an immediate-early growth response gene which is induced by mitogenic stimulation. The protein encoded by this gene participates in the transcriptional regulation of genes in controling biological rhythm. It may also play a role in a wide variety of processes including muscle development, lymphocyte development, endothelial cell growth and migration, and neuronal development. Alternative splicing results in multiple transcript variants encoding distinct isoforms.[provided by RefSeq, Dec 2010]

GeneCards Summary for EGR3 Gene

EGR3 (Early Growth Response 3) is a Protein Coding gene. Diseases associated with EGR3 include chondromalacia patellae and ancylostomiasis. Among its related pathways are Neuroscience and Viral carcinogenesis. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity. An important paralog of this gene is WT1.

UniProtKB/Swiss-Prot for EGR3 Gene

  • Probable transcription factor involved in muscle spindle development

Gene Wiki entry for EGR3 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EGR3 Gene

Genomics for EGR3 Gene

Regulatory Elements for EGR3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for EGR3 Gene

Start:
22,687,659 bp from pter
End:
22,693,302 bp from pter
Size:
5,644 bases
Orientation:
Minus strand

Genomic View for EGR3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for EGR3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EGR3 Gene

Proteins for EGR3 Gene

  • Protein details for EGR3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q06889-EGR3_HUMAN
    Recommended name:
    Early growth response protein 3
    Protein Accession:
    Q06889
    Secondary Accessions:
    • A8K8U9
    • B4DHJ5
    • E7EW38
    • Q2M3W2

    Protein attributes for EGR3 Gene

    Size:
    387 amino acids
    Molecular mass:
    42613 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for EGR3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for EGR3 Gene

Proteomics data for EGR3 Gene at MOPED

Post-translational modifications for EGR3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for EGR3 Gene

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for EGR3 (EGR3)

No data available for DME Specific Peptides for EGR3 Gene

Domains for EGR3 Gene

Gene Families for EGR3 Gene

HGNC:
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for EGR3 Gene

Suggested Antigen Peptide Sequences for EGR3 Gene

Graphical View of Domain Structure for InterPro Entry

Q06889

UniProtKB/Swiss-Prot:

EGR3_HUMAN :
  • Q06889
Family:
  • Belongs to the EGR C2H2-type zinc-finger protein family.
Similarity:
  • Contains 3 C2H2-type zinc fingers.
genes like me logo Genes that share domains with EGR3: view

Function for EGR3 Gene

Molecular function for EGR3 Gene

GENATLAS Biochemistry:
immediate early growth response,gene 3,homologous to EGR1,EGR2
UniProtKB/Swiss-Prot Function:
Probable transcription factor involved in muscle spindle development

Gene Ontology (GO) - Molecular Function for EGR3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity TAS 1906159
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with EGR3: view
genes like me logo Genes that share phenotypes with EGR3: view

Animal Models for EGR3 Gene

MGI Knock Outs for EGR3:

Animal Model Products

miRNA for EGR3 Gene

miRTarBase miRNAs that target EGR3

Transcription Factor Targeting for EGR3 Gene

Selected GeneGlobe predicted Target genes for EGR3

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for EGR3

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) and HOMER Transcription for EGR3 Gene

Localization for EGR3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for EGR3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for EGR3 Gene COMPARTMENTS Subcellular localization image for EGR3 gene
Compartment Confidence
nucleus 4
cytoskeleton 2
cytosol 2
extracellular 1

Gene Ontology (GO) - Cellular Components for EGR3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
GO:0005737 cytoplasm IBA --
genes like me logo Genes that share ontologies with EGR3: view

Pathways for EGR3 Gene

genes like me logo Genes that share pathways with EGR3: view

Pathways by source for EGR3 Gene

1 Cell Signaling Technology pathway for EGR3 Gene
2 KEGG pathways for EGR3 Gene

PCR Array Products

Interacting Proteins for EGR3 Gene

Gene Ontology (GO) - Biological Process for EGR3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001938 positive regulation of endothelial cell proliferation IMP 18059339
GO:0002042 cell migration involved in sprouting angiogenesis IDA 18059339
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0007274 neuromuscular synaptic transmission IEA --
genes like me logo Genes that share ontologies with EGR3: view

Compounds for EGR3 Gene

(5) Novoseek inferred chemical compound relationships for EGR3 Gene

Compound -log(P) Hits PubMed IDs
zinc 47.7 3
oligonucleotide 24 1
serine 16.5 1
cyclosporin a 8.35 2
estrogen 0.235 2
genes like me logo Genes that share compounds with EGR3: view

Transcripts for EGR3 Gene

Unigene Clusters for EGR3 Gene

Early growth response 3:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for EGR3

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for EGR3 Gene

No ASD Table

Relevant External Links for EGR3 Gene

GeneLoc Exon Structure for
EGR3
ECgene alternative splicing isoforms for
EGR3

Expression for EGR3 Gene

mRNA expression in normal human tissues for EGR3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for EGR3 Gene

This gene is overexpressed in Skin - Not Sun Exposed (Suprapubic) (4.2) and Skin - Sun Exposed (Lower leg) (4.0).

SOURCE GeneReport for Unigene cluster for EGR3 Gene Hs.534313

genes like me logo Genes that share expressions with EGR3: view

In Situ Assay Products

No data available for Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for EGR3 Gene

Orthologs for EGR3 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for EGR3 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia EGR3 35
  • 95 (n)
  • 98.97 (a)
EGR3 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia EGR3 35
  • 96.3 (n)
  • 99.48 (a)
EGR3 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Egr3 35
  • 94.32 (n)
  • 98.97 (a)
Egr3 16
Egr3 36
  • 99 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia EGR3 35
  • 100 (n)
  • 100 (a)
EGR3 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Egr3 35
  • 93.97 (n)
  • 98.71 (a)
oppossum
(Monodelphis domestica)
Mammalia EGR3 36
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia EGR3 36
  • 91 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia egr3 35
  • 68.01 (n)
  • 71.51 (a)
zebrafish
(Danio rerio)
Actinopterygii egr3 35
  • 68.74 (n)
  • 70.13 (a)
egr3 36
  • 64 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta sr 37
  • 82 (a)
sr 36
  • 12 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea C27C12.2 37
  • 80 (a)
Y55F3AM.7 37
  • 72 (a)
ZC328.2 36
  • 18 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes MIG2 36
  • 12 (a)
ManyToMany
MIG3 36
  • 11 (a)
ManyToMany
RIM101 38
Species with no ortholog for EGR3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for EGR3 Gene

ENSEMBL:
Gene Tree for EGR3 (if available)
TreeFam:
Gene Tree for EGR3 (if available)

Paralogs for EGR3 Gene

Paralogs for EGR3 Gene

Selected SIMAP similar genes for EGR3 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with EGR3: view

Variants for EGR3 Gene

Sequence variations from dbSNP and Humsavar for EGR3 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs1049155 -- 22,688,472(-) AGAAG(G/T)AGAGA utr-variant-3-prime
rs1130425 -- 22,693,262(-) CGAGA(C/T)CCCCC upstream-variant-2KB, utr-variant-5-prime
rs1533306 -- 22,694,660(-) GGAGC(A/G)GGCCC upstream-variant-2KB
rs1533307 -- 22,694,184(-) CCTAG(A/G)GTCAG upstream-variant-2KB
rs1877670 -- 22,689,048(+) TCACA(C/T)GTATA utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for EGR3 Gene

Variant ID Type Subtype PubMed ID
essv19243 CNV CNV 17122850
essv21913 CNV CNV 17122850
nsv6117 CNV Insertion 18451855
nsv890677 CNV Loss 21882294
nsv8322 CNV Gain 18304495
nsv890678 CNV Loss 21882294

Relevant External Links for EGR3 Gene

HapMap Linkage Disequilibrium report
EGR3
Human Gene Mutation Database (HGMD)
EGR3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for EGR3 Gene

Disorders for EGR3 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for EGR3 Gene in MalaCards »

(5) Diseases for EGR3 Gene including...

(4) University of Copenhagen DISEASES for EGR3 Gene

(1) Novoseek inferred disease relationships for EGR3 Gene

Disease -log(P) Hits PubMed IDs
cancer 0 1

Relevant External Links for EGR3

Genetic Association Database (GAD)
EGR3
Human Genome Epidemiology (HuGE) Navigator
EGR3
genes like me logo Genes that share disorders with EGR3: view

No data available for OMIM , UniProtKB/Swiss-Prot and Genatlas for EGR3 Gene

Publications for EGR3 Gene

  1. EGR3, a novel member of the Egr family of genes encoding immediate- early transcription factors. (PMID: 1906159) Patwardhan S. … Sukhatme V.P. (Oncogene 1991) 2 3 4 23
  2. Vascular endothelial growth factor-regulated gene expression in endothelial cells: KDR-mediated induction of Egr3 and the related nuclear receptors Nur77, Nurr1, and Nor1. (PMID: 14525795) Liu D. … Zachary I. (Arterioscler. Thromb. Vasc. Biol. 2003) 3 23
  3. Transcription factor EGR3 is involved in the estrogen-signaling pathway in breast cancer cells. (PMID: 15171706) Inoue A. … Hayashi S.I. (J. Mol. Endocrinol. 2004) 3 23
  4. The zinc-finger transcription factor, early growth response 3, mediates VEGF-induced angiogenesis. (PMID: 18059339) Liu D. … Zachary I. (Oncogene 2008) 3 23
  5. Vascular endothelial growth factor activation of endothelial cells is mediated by early growth response-3. (PMID: 19965691) Suehiro J. … Minami T. (Blood 2010) 3 23

Products for EGR3 Gene

Sources for EGR3 Gene

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