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Aliases for DDX10 Gene

Aliases for DDX10 Gene

  • DEAD (Asp-Glu-Ala-Asp) Box Polypeptide 10 2 3
  • DEAD/H (Asp-Glu-Ala-Asp/His) Box Polypeptide 10 (RNA Helicase) 2 3
  • DEAD Box Protein 10 3 4
  • Probable ATP-Dependent RNA Helicase DDX10 3
  • DDX10-NUP98 Fusion Protein Type 2 3
  • DEAD Box-10 3
  • EC 3.6.4.13 4
  • EC 3.6.1 64
  • HRH-J8 3

External Ids for DDX10 Gene

Summaries for DDX10 Gene

Entrez Gene Summary for DDX10 Gene

  • DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. This gene encodes a DEAD box protein, and it may be involved in ribosome assembly. Fusion of this gene and the nucleoporin gene, NUP98, by inversion 11 (p15q22) chromosome translocation is found in the patients with de novo or therapy-related myeloid malignancies. [provided by RefSeq, Jul 2008]

GeneCards Summary for DDX10 Gene

DDX10 (DEAD (Asp-Glu-Ala-Asp) Box Polypeptide 10) is a Protein Coding gene. GO annotations related to this gene include RNA binding and RNA helicase activity.

UniProtKB/Swiss-Prot for DDX10 Gene

  • Putative ATP-dependent RNA helicase

Gene Wiki entry for DDX10 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DDX10 Gene

Genomics for DDX10 Gene

Genomic Location for DDX10 Gene

Start:
108,665,025 bp from pter
End:
108,940,930 bp from pter
Size:
275,906 bases
Orientation:
Plus strand

Genomic View for DDX10 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DDX10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DDX10 Gene

Regulatory Elements for DDX10 Gene

Proteins for DDX10 Gene

  • Protein details for DDX10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q13206-DDX10_HUMAN
    Recommended name:
    Probable ATP-dependent RNA helicase DDX10
    Protein Accession:
    Q13206
    Secondary Accessions:
    • B2RCQ3
    • Q5BJD8

    Protein attributes for DDX10 Gene

    Size:
    875 amino acids
    Molecular mass:
    100888 Da
    Quaternary structure:
    No Data Available

    Three dimensional structures from OCA and Proteopedia for DDX10 Gene

neXtProt entry for DDX10 Gene

Proteomics data for DDX10 Gene at MOPED

Selected DME Specific Peptides for DDX10 Gene

Post-translational modifications for DDX10 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for DDX10 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains for DDX10 Gene

Gene Families for DDX10 Gene

HGNC:
  • DDX :DEAD-boxes

UniProtKB/Swiss-Prot:

DDX10_HUMAN
Domain:
  • The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis:
    • Q13206
  • Contains 1 helicase ATP-binding domain.:
    • Q13206
  • Contains 1 helicase C-terminal domain.:
    • Q13206
Family:
  • Belongs to the DEAD box helicase family. DDX10/DBP4 subfamily.:
    • Q13206
genes like me logo Genes that share domains with DDX10: view

Function for DDX10 Gene

Molecular function for DDX10 Gene

GENATLAS Biochemistry: DEAD/H box protein 10,ubiquitously expressed,fused with NUP98 in de novo or therapy related myeloid maligancies with inv 11(p15-q22)
UniProtKB/Swiss-Prot CatalyticActivity: ATP + H(2)O = ADP + phosphate
UniProtKB/Swiss-Prot Function: Putative ATP-dependent RNA helicase

Enzyme Numbers (IUBMB) for DDX10 Gene

Gene Ontology (GO) - Molecular Function for DDX10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003723 RNA binding --
GO:0003724 RNA helicase activity TAS 8660968
GO:0004004 ATP-dependent RNA helicase activity IBA --
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with DDX10: view

Phenotypes for DDX10 Gene

genes like me logo Genes that share phenotypes with DDX10: view

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for DDX10 Gene

Localization for DDX10 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for DDX10 Gene COMPARTMENTS Subcellular localization image for DDX10 gene
Compartment Confidence
nucleus 3
cytoskeleton 1

Gene Ontology (GO) - Cellular Components for DDX10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IBA --
GO:0005737 cytoplasm IBA --
genes like me logo Genes that share ontologies with DDX10: view

Pathways for DDX10 Gene

SuperPathways for DDX10 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DDX10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006200 obsolete ATP catabolic process --
GO:0008152 metabolic process --
GO:0010501 RNA secondary structure unwinding IBA --
genes like me logo Genes that share ontologies with DDX10: view

No data available for Pathways by source for DDX10 Gene

Transcripts for DDX10 Gene

Unigene Clusters for DDX10 Gene

DEAD (Asp-Glu-Ala-Asp) box polypeptide 10:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DDX10 Gene

No ASD Table

Relevant External Links for DDX10 Gene

GeneLoc Exon Structure for
DDX10
ECgene alternative splicing isoforms for
DDX10

Expression for DDX10 Gene

mRNA expression in normal human tissues for DDX10 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for DDX10 Gene

SOURCE GeneReport for Unigene cluster for DDX10 Gene Hs.591931

mRNA Expression by UniProt/SwissProt for DDX10 Gene

Q13206-DDX10_HUMAN
Tissue specificity: High in testis but widely expressed
genes like me logo Genes that share expressions with DDX10: view

Orthologs for DDX10 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for DDX10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DDX10 36
  • 99.43 (n)
  • 99.09 (a)
DDX10 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia DDX10 36
  • 89.32 (n)
  • 89.09 (a)
DDX10 37
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia DDX10 36
  • 89.45 (n)
  • 89.15 (a)
DDX10 37
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ddx10 36
  • 86.22 (n)
  • 85.42 (a)
Ddx10 16
Ddx10 37
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia DDX10 37
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia DDX10 37
  • 77 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ddx10 36
  • 86.44 (n)
  • 86.55 (a)
chicken
(Gallus gallus)
Aves DDX10 36
  • 70.59 (n)
  • 67.83 (a)
DDX10 37
  • 66 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia DDX10 37
  • 70 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.14681 36
tropical clawed frog
(Silurana tropicalis)
Amphibia ddx10 36
  • 66.06 (n)
  • 66.95 (a)
zebrafish
(Danio rerio)
Actinopterygii ddx10 36
  • 64.87 (n)
  • 66.01 (a)
ddx10 37
  • 59 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP001057 36
  • 57.74 (n)
  • 54.82 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG5800 36
  • 53.46 (n)
  • 49.51 (a)
CG5800 37
  • 42 (a)
OneToOne
CG9630 38
  • 38 (a)
CG5800 38
  • 51 (a)
worm
(Caenorhabditis elegans)
Secernentea Y23H5B.6 36
  • 54.22 (n)
  • 49.75 (a)
Y23H5B.6 37
  • 42 (a)
OneToOne
Y23H5B.6 38
  • 52 (a)
ZK512.2 38
  • 33 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes HCA4 37
  • 40 (a)
OneToOne
HCA4 39
rice
(Oryza sativa)
Liliopsida Os.24708 36
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.10849 36
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 52 (a)
OneToOne
Species with no ortholog for DDX10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for DDX10 Gene

ENSEMBL:
Gene Tree for DDX10 (if available)
TreeFam:
Gene Tree for DDX10 (if available)

Paralogs for DDX10 Gene

Selected SIMAP similar genes for DDX10 Gene using alignment to 3 proteins:

Pseudogenes.org Pseudogenes for DDX10 Gene

genes like me logo Genes that share paralogs with DDX10: view

No data available for Paralogs for DDX10 Gene

Variants for DDX10 Gene

Sequence variations from dbSNP and Humsavar for DDX10 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs723697 -- 108,877,021(-) AGCCA(C/T)TTCTT intron-variant
rs728737 -- 108,744,572(+) AGTTG(A/C)CCTTA intron-variant
rs765139 -- 108,707,806(-) TCTAA(C/T)TGTAG intron-variant
rs890237 -- 108,877,671(-) AATAT(A/T)GATCT intron-variant
rs890238 -- 108,916,443(+) AATAA(A/G)GGACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DDX10 Gene

Variant ID Type Subtype PubMed ID
nsv898386 CNV Gain 21882294
nsv898388 CNV Gain 21882294
nsv832264 CNV Gain+Loss 17160897
esv2660905 CNV Deletion 23128226
esv2675797 CNV Deletion 23128226
nsv826084 CNV Gain 20364138
nsv898389 CNV Gain 21882294
nsv39083 CNV Loss 16902084
esv23672 CNV Loss 19812545
esv2673710 CNV Deletion 23128226

Relevant External Links for DDX10 Gene

HapMap Linkage Disequilibrium report
DDX10
Human Gene Mutation Database (HGMD)
DDX10

Disorders for DDX10 Gene

(1) Novoseek inferred disease relationships for DDX10 Gene

Disease -log(P) Hits PubMed IDs
myelodysplastic syndromes 51.9 1

Relevant External Links for DDX10

Genetic Association Database (GAD)
DDX10
Human Genome Epidemiology (HuGE) Navigator
DDX10
genes like me logo Genes that share disorders with DDX10: view

No data available for UniProtKB/Swiss-Prot for DDX10 Gene

Publications for DDX10 Gene

  1. A human gene (DDX10) encoding a putative DEAD-box RNA helicase at 11q22-q23. (PMID: 8660968) Savitsky K. … Rotman G. (Genomics 1996) 2 3 4
  2. The inv(11)(p15q22) chromosome translocation of de novo and therapy-related myeloid malignancies results in fusion of the nucleoporin gene, NUP98, with the putative RNA helicase gene, DDX10. (PMID: 9166830) Arai Y. … Ohki M. (Blood 1997) 3 23
  3. The inv(11)(p15q22) chromosome translocation of therapy-related myelodysplasia with NUP98-DDX10 and DDX10-NUP98 fusion transcripts. (PMID: 10222653) Ikeda T. … Takahara J. (Int. J. Hematol. 1999) 3 23
  4. Fusion of the nucleoporin gene, NUP98, and the putative RNA helicase gene, DDX10, by inversion 11 (p15q22) chromosome translocation in a patient with etoposide-related myelodysplastic syndrome. (PMID: 10830185) Nakao K. … Ohki M. (Intern. Med. 2000) 3 23
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for DDX10 Gene

Sources for DDX10 Gene

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