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Aliases for FAM134C Gene

Aliases for FAM134C Gene

  • Family With Sequence Similarity 134 Member C 2 3 5
  • Family With Sequence Similarity 134, Member C 2

External Ids for FAM134C Gene

Previous GeneCards Identifiers for FAM134C Gene

  • GC17M037986
  • GC17M040731
  • GC17M036496

Summaries for FAM134C Gene

GeneCards Summary for FAM134C Gene

FAM134C (Family With Sequence Similarity 134 Member C) is a Protein Coding gene. An important paralog of this gene is FAM134A.

UniProtKB/Swiss-Prot for FAM134C Gene

  • Mediates NRF1-enhanced neurite outgrowth.

Gene Wiki entry for FAM134C Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for FAM134C Gene

Genomics for FAM134C Gene

Regulatory Elements for FAM134C Gene

Promoters for FAM134C Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around FAM134C on UCSC Golden Path with GeneCards custom track

Genomic Location for FAM134C Gene

Chromosome:
17
Start:
42,579,508 bp from pter
End:
42,610,623 bp from pter
Size:
31,116 bases
Orientation:
Minus strand

Genomic View for FAM134C Gene

Genes around FAM134C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
FAM134C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for FAM134C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for FAM134C Gene

Proteins for FAM134C Gene

  • Protein details for FAM134C Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86VR2-F134C_HUMAN
    Recommended name:
    Protein FAM134C
    Protein Accession:
    Q86VR2
    Secondary Accessions:
    • B3KR75

    Protein attributes for FAM134C Gene

    Size:
    466 amino acids
    Molecular mass:
    51396 Da
    Quaternary structure:
    • Interacts with ATG8 family modifier proteins MAP1LC3A, MAP1LC3B, GABARAP, and GABARAPL1.

    Alternative splice isoforms for FAM134C Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for FAM134C Gene

Proteomics data for FAM134C Gene at MOPED

Post-translational modifications for FAM134C Gene

  • Ubiquitination at Lys 115
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for FAM134C Gene

Domains & Families for FAM134C Gene

Protein Domains for FAM134C Gene

ProtoNet:

Suggested Antigen Peptide Sequences for FAM134C Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86VR2

UniProtKB/Swiss-Prot:

F134C_HUMAN :
  • The LIR motif interacts with ATG8 family proteins.
  • Belongs to the FAM134 family.
Domain:
  • The LIR motif interacts with ATG8 family proteins.
Family:
  • Belongs to the FAM134 family.
genes like me logo Genes that share domains with FAM134C: view

No data available for Gene Families for FAM134C Gene

Function for FAM134C Gene

Molecular function for FAM134C Gene

UniProtKB/Swiss-Prot Function:
Mediates NRF1-enhanced neurite outgrowth.
genes like me logo Genes that share phenotypes with FAM134C: view

Animal Models for FAM134C Gene

MGI Knock Outs for FAM134C:

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for FAM134C Gene

Localization for FAM134C Gene

Subcellular locations from UniProtKB/Swiss-Prot for FAM134C Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for FAM134C Gene COMPARTMENTS Subcellular localization image for FAM134C gene
Compartment Confidence
plasma membrane 3
cytosol 2
nucleus 2
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for FAM134C Gene

Pathways & Interactions for FAM134C Gene

SuperPathways for FAM134C Gene

No Data Available

Gene Ontology (GO) - Biological Process for FAM134C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for FAM134C Gene

Drugs & Compounds for FAM134C Gene

No Compound Related Data Available

Transcripts for FAM134C Gene

Unigene Clusters for FAM134C Gene

Family with sequence similarity 134, member C:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for FAM134C Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c ^ 9 ^ 10 ^ 11
SP1: - - - - -
SP2: - - - - -
SP3: - - - - - -
SP4: - - - - - -
SP5: - -
SP6: - - - - - - -
SP7:
SP8: - - -
SP9: - -

Relevant External Links for FAM134C Gene

GeneLoc Exon Structure for
FAM134C
ECgene alternative splicing isoforms for
FAM134C

Expression for FAM134C Gene

mRNA expression in normal human tissues for FAM134C Gene

Protein differential expression in normal tissues from HIPED for FAM134C Gene

This gene is overexpressed in Adipocyte (8.8), Testis (6.6), and Bone (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for FAM134C Gene



SOURCE GeneReport for Unigene cluster for FAM134C Gene Hs.632262

genes like me logo Genes that share expression patterns with FAM134C: view

Protein tissue co-expression partners for FAM134C Gene

- Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for FAM134C Gene

Orthologs for FAM134C Gene

This gene was present in the common ancestor of chordates.

Orthologs for FAM134C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia FAM134C 35
  • 99.86 (n)
  • 99.79 (a)
FAM134C 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia FAM134C 36
  • 94 (a)
OneToOne
FAM134C 35
  • 91.13 (n)
  • 93.56 (a)
dog
(Canis familiaris)
Mammalia FAM134C 35
  • 92.27 (n)
  • 92.92 (a)
FAM134C 36
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Fam134c 16
Fam134c 36
  • 91 (a)
OneToOne
Fam134c 35
  • 90.34 (n)
  • 91.2 (a)
oppossum
(Monodelphis domestica)
Mammalia FAM134C 36
  • 76 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia FAM134C 36
  • 61 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Fam134c 35
  • 90.49 (n)
  • 90.99 (a)
chicken
(Gallus gallus)
Aves FAM134C 36
  • 68 (a)
OneToOne
FAM134C 35
  • 70.34 (n)
  • 70.49 (a)
lizard
(Anolis carolinensis)
Reptilia FAM134C 36
  • 62 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.30959 35
tropical clawed frog
(Silurana tropicalis)
Amphibia fam134c 35
  • 66.04 (n)
  • 66.82 (a)
Str.6330 35
zebrafish
(Danio rerio)
Actinopterygii fam134c 36
  • 48 (a)
OneToOne
fam134c 35
  • 61.19 (n)
  • 57.53 (a)
Species with no ortholog for FAM134C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for FAM134C Gene

ENSEMBL:
Gene Tree for FAM134C (if available)
TreeFam:
Gene Tree for FAM134C (if available)

Paralogs for FAM134C Gene

Paralogs for FAM134C Gene

genes like me logo Genes that share paralogs with FAM134C: view

Variants for FAM134C Gene

Sequence variations from dbSNP and Humsavar for FAM134C Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs626882 -- 42,597,940(+) ACGTT(A/T)TTTTA intron-variant, upstream-variant-2KB
rs4793056 -- 42,596,719(+) TTGAG(C/G)GCTGG intron-variant, upstream-variant-2KB
rs3067882 -- 42,581,052(+) AAAAA(-/AGAAAA)GAAAA nc-transcript-variant, utr-variant-3-prime
rs6503710 -- 42,592,420(+) CCTTC(A/T)GCTTT intron-variant
rs6503711 -- 42,605,718(+) CCAGG(C/G)ACAGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for FAM134C Gene

Variant ID Type Subtype PubMed ID
dgv3172n71 CNV Loss 21882294
esv33998 OTHER Inversion 15654335

Variation tolerance for FAM134C Gene

Residual Variation Intolerance Score: 27% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.29; 40.95% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for FAM134C Gene

HapMap Linkage Disequilibrium report
FAM134C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for FAM134C Gene

Disorders for FAM134C Gene

Relevant External Links for FAM134C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
FAM134C

No disorders were found for FAM134C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for FAM134C Gene

Publications for FAM134C Gene

  1. Novel genes FAM134C, C3orf10 and ENOX1 are regulated by NRF-1 and differentially regulate neurite outgrowth in neuroblastoma cells and hippocampal neurons. (PMID: 23939472) Wang J.L. … Huang A.M. (Gene 2013) 3 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  5. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for FAM134C Gene

Sources for FAM134C Gene

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