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Aliases for CYP26A1 Gene

Aliases for CYP26A1 Gene

  • Cytochrome P450 Family 26 Subfamily A Member 1 2 3 5
  • Cytochrome P450, Family 26, Subfamily A, Polypeptide 1 2 3
  • Cytochrome P450, Subfamily XXVIA, Polypeptide 1 2 3
  • Cytochrome P450 Retinoic Acid-Inactivating 1 3 4
  • Retinoic Acid-Metabolizing Cytochrome 3 4
  • Retinoic Acid 4-Hydroxylase 3 4
  • Cytochrome P450RAI 3 4
  • P450RAI1 3 4
  • HP450RAI 3 4
  • CYP26 3 4
  • P450, Retinoic Acid-Inactivating, 1 3
  • EC 1.14.-.- 4
  • P450RAI 3
  • CP26 3

External Ids for CYP26A1 Gene

Previous GeneCards Identifiers for CYP26A1 Gene

  • GC10P093726
  • GC10P094066
  • GC10P094953
  • GC10P094486
  • GC10P094497
  • GC10P094823
  • GC10P088460

Summaries for CYP26A1 Gene

Entrez Gene Summary for CYP26A1 Gene

  • This gene encodes a member of the cytochrome P450 superfamily of enzymes. The cytochrome P450 proteins are monooxygenases which catalyze many reactions involved in drug metabolism and synthesis of cholesterol, steroids and other lipids. This endoplasmic reticulum protein acts on retinoids, including all-trans-retinoic acid (RA), with both 4-hydroxylation and 18-hydroxylation activities. This enzyme regulates the cellular level of retinoic acid which is involved in regulation of gene expression in both embryonic and adult tissues. Two alternatively spliced transcript variants of this gene, which encode the distinct isoforms, have been reported. [provided by RefSeq, Jul 2008]

GeneCards Summary for CYP26A1 Gene

CYP26A1 (Cytochrome P450 Family 26 Subfamily A Member 1) is a Protein Coding gene. Diseases associated with CYP26A1 include Caudal Regression Syndrome and Mixed Germ Cell Cancer. Among its related pathways are Phase II conjugation and Metabolism of xenobiotics by cytochrome P450. GO annotations related to this gene include iron ion binding and oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen. An important paralog of this gene is CYP26C1.

UniProtKB/Swiss-Prot for CYP26A1 Gene

  • Plays a key role in retinoic acid metabolism. Acts on retinoids, including all-trans-retinoic acid (RA) and its stereoisomer 9-cis-RA. Capable of both 4-hydroxylation and 18-hydroxylation. Responsible for generation of several hydroxylated forms of RA, including 4-OH-RA, 4-oxo-RA and 18-OH-RA.

Tocris Summary for CYP26A1 Gene

  • Cytochrome P450 (CYP450) enzymes are a diverse group of catalysts that contains 57 members in humans. CYPs are usually membrane-bound and are localized to the inner mitochondrial or endoplasmic reticular membrane. CYPs have oxygenase activity.

Gene Wiki entry for CYP26A1 Gene

No data available for PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CYP26A1 Gene

Genomics for CYP26A1 Gene

Regulatory Elements for CYP26A1 Gene

Enhancers for CYP26A1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around CYP26A1 on UCSC Golden Path with GeneCards custom track

Promoters for CYP26A1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around CYP26A1 on UCSC Golden Path with GeneCards custom track

Genomic Location for CYP26A1 Gene

Chromosome:
10
Start:
93,073,475 bp from pter
End:
93,077,890 bp from pter
Size:
4,416 bases
Orientation:
Plus strand

Genomic View for CYP26A1 Gene

Genes around CYP26A1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CYP26A1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CYP26A1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CYP26A1 Gene

Proteins for CYP26A1 Gene

  • Protein details for CYP26A1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O43174-CP26A_HUMAN
    Recommended name:
    Cytochrome P450 26A1
    Protein Accession:
    O43174
    Secondary Accessions:
    • B3KNI4
    • Q5VXH9
    • Q5VXI0

    Protein attributes for CYP26A1 Gene

    Size:
    497 amino acids
    Molecular mass:
    56199 Da
    Cofactor:
    Name=heme; Xref=ChEBI:CHEBI:30413;
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for CYP26A1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CYP26A1 Gene

Proteomics data for CYP26A1 Gene at MOPED

Post-translational modifications for CYP26A1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for CYP26A1 Gene

Antibody Products

No data available for DME Specific Peptides for CYP26A1 Gene

Domains & Families for CYP26A1 Gene

Gene Families for CYP26A1 Gene

Protein Domains for CYP26A1 Gene

Suggested Antigen Peptide Sequences for CYP26A1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O43174

UniProtKB/Swiss-Prot:

CP26A_HUMAN :
  • Belongs to the cytochrome P450 family.
Family:
  • Belongs to the cytochrome P450 family.
genes like me logo Genes that share domains with CYP26A1: view

Function for CYP26A1 Gene

Molecular function for CYP26A1 Gene

GENATLAS Biochemistry:
cytochrome p450,family XXVI,involved in extrahepatic metabolism of retinoic acid
UniProtKB/Swiss-Prot Function:
Plays a key role in retinoic acid metabolism. Acts on retinoids, including all-trans-retinoic acid (RA) and its stereoisomer 9-cis-RA. Capable of both 4-hydroxylation and 18-hydroxylation. Responsible for generation of several hydroxylated forms of RA, including 4-OH-RA, 4-oxo-RA and 18-OH-RA.
UniProtKB/Swiss-Prot Induction:
By retinoic acid.

Enzyme Numbers (IUBMB) for CYP26A1 Gene

Gene Ontology (GO) - Molecular Function for CYP26A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001972 retinoic acid binding IDA 10823918
GO:0008401 retinoic acid 4-hydroxylase activity IDA,TAS --
GO:0019825 oxygen binding TAS 9228017
genes like me logo Genes that share ontologies with CYP26A1: view
genes like me logo Genes that share phenotypes with CYP26A1: view

Animal Models for CYP26A1 Gene

MGI Knock Outs for CYP26A1:

Animal Model Products

CRISPR Products

miRNA for CYP26A1 Gene

miRTarBase miRNAs that target CYP26A1

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CYP26A1 Gene

Localization for CYP26A1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CYP26A1 Gene

Endoplasmic reticulum membrane; Peripheral membrane protein. Microsome membrane; Peripheral membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CYP26A1 Gene COMPARTMENTS Subcellular localization image for CYP26A1 gene
Compartment Confidence
endoplasmic reticulum 5
chloroplast 3
extracellular 2
nucleus 2
golgi apparatus 1
lysosome 1
plasma membrane 1
vacuole 1

No data available for Gene Ontology (GO) - Cellular Components for CYP26A1 Gene

Pathways & Interactions for CYP26A1 Gene

genes like me logo Genes that share pathways with CYP26A1: view

Interacting Proteins for CYP26A1 Gene

Gene Ontology (GO) - Biological Process for CYP26A1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0034653 retinoic acid catabolic process IDA 10823918
GO:0044281 small molecule metabolic process TAS --
genes like me logo Genes that share ontologies with CYP26A1: view

No data available for SIGNOR curated interactions for CYP26A1 Gene

Drugs & Compounds for CYP26A1 Gene

(9) Drugs for CYP26A1 Gene - From: DrugBank, DGIdb, HMDB, Tocris, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Ketoconazole Approved, Investigational Pharma Pore Blocker, Enzyme, inhibitor Inhibitor of cyclosporine oxidase and testosterone 6 beta-hydroxylase, Cytochrome P450c17 inhibitor 174
Acitretin Approved Pharma Enzyme, substrate Metabolite of etretinate 30
Vitamin A Approved Nutra Enzyme, inducer 438
Omeprazole Approved, Investigational Pharma Activator H+,K+-ATPase inhibitor 327
Etretinate Withdrawn Pharma Enzyme, substrate 0

(9) Additional Compounds for CYP26A1 Gene - From: Tocris and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
Liarozole dihydrochloride
TMS
24144-92-1
YM 511
148869-05-0

(5) Tocris Compounds for CYP26A1 Gene

Compound Action Cas Number
Ketoconazole Cytochrome P450c17 inhibitor 65277-42-1
Liarozole dihydrochloride Blocks retinoic acid metabolism
Omeprazole H+,K+-ATPase inhibitor 73590-58-6
TMS Cytochrome P450 1B1 inhibitor 24144-92-1
YM 511 Potent aromatase (CYP19) inhibitor 148869-05-0
genes like me logo Genes that share compounds with CYP26A1: view

Transcripts for CYP26A1 Gene

Unigene Clusters for CYP26A1 Gene

Cytochrome P450, family 26, subfamily A, polypeptide 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CYP26A1 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b · 7c ^ 8a · 8b · 8c
SP1: - - - -
SP2: - -
SP3: - - -
SP4:
SP5: -
SP6:

Relevant External Links for CYP26A1 Gene

GeneLoc Exon Structure for
CYP26A1
ECgene alternative splicing isoforms for
CYP26A1

Expression for CYP26A1 Gene

mRNA expression in normal human tissues for CYP26A1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CYP26A1 Gene

This gene is overexpressed in Liver (x34.1).

Protein differential expression in normal tissues from HIPED for CYP26A1 Gene

This gene is overexpressed in Breast (67.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CYP26A1 Gene



SOURCE GeneReport for Unigene cluster for CYP26A1 Gene Hs.150595

mRNA Expression by UniProt/SwissProt for CYP26A1 Gene

O43174-CP26A_HUMAN
Tissue specificity: Highest levels in adult liver, heart, pituitary gland, adrenal gland, placenta and regions of the brain.
genes like me logo Genes that share expression patterns with CYP26A1: view

Protein tissue co-expression partners for CYP26A1 Gene

Primer Products

Orthologs for CYP26A1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for CYP26A1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CYP26A1 35
  • 91.95 (n)
  • 94.16 (a)
CYP26A1 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CYP26A1 35
  • 92.42 (n)
  • 94.97 (a)
CYP26C1 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cyp26a1 35
  • 89.81 (n)
  • 93.96 (a)
Cyp26a1 16
Cyp26a1 36
  • 94 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia LOC450614 35
  • 99.8 (n)
  • 99.8 (a)
CYP26A1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cyp26a1 35
  • 87.86 (n)
  • 91.95 (a)
oppossum
(Monodelphis domestica)
Mammalia CYP26A1 36
  • 87 (a)
OneToOne
chicken
(Gallus gallus)
Aves CYP26A1 35
  • 77.85 (n)
  • 80.28 (a)
CYP26A1 36
  • 80 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia CYP26A1 36
  • 76 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia cyp26a1 35
  • 67.85 (n)
  • 70.23 (a)
African clawed frog
(Xenopus laevis)
Amphibia LOC398094 35
zebrafish
(Danio rerio)
Actinopterygii cyp26a1 35
  • 65.85 (n)
  • 69.47 (a)
cyp26a1 36
  • 68 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta Cyp313a1 36
  • 20 (a)
ManyToMany
Cyp313a2 36
  • 20 (a)
ManyToMany
Cyp313a3 36
  • 20 (a)
ManyToMany
Cyp313a4 36
  • 20 (a)
ManyToMany
Cyp313a5 36
  • 20 (a)
ManyToMany
Cyp313b1 36
  • 19 (a)
ManyToMany
Cyp318a1 36
  • 15 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes ERG11 36
  • 20 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons CYP716A2 35
  • 44.56 (n)
  • 33.67 (a)
rice
(Oryza sativa)
Liliopsida Os07g0520300 35
  • 45.49 (n)
  • 31.56 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 31 (a)
ManyToMany
CSA.5303 36
  • 33 (a)
ManyToMany
Species with no ortholog for CYP26A1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CYP26A1 Gene

ENSEMBL:
Gene Tree for CYP26A1 (if available)
TreeFam:
Gene Tree for CYP26A1 (if available)

Paralogs for CYP26A1 Gene

Paralogs for CYP26A1 Gene

(3) SIMAP similar genes for CYP26A1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with CYP26A1: view

Variants for CYP26A1 Gene

Sequence variations from dbSNP and Humsavar for CYP26A1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs3928850 -- 93,073,019(+) AAGGA(A/C)CCCCT upstream-variant-2KB
rs2229104 -- 93,077,124(+) GGAGG(A/C/G)CTTAG reference, synonymous-codon
rs4411227 -- 93,071,756(+) CCTGC(C/G)GGACG upstream-variant-2KB
rs11812460 -- 93,072,371(+) GGCGT(A/G)CTTCT upstream-variant-2KB
rs35148996 -- 93,071,745(+) TTAAT(-/G)CCTTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for CYP26A1 Gene

Variant ID Type Subtype PubMed ID
nsv895899 CNV Loss 21882294

Variation tolerance for CYP26A1 Gene

Residual Variation Intolerance Score: 10% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.58; 44.85% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CYP26A1 Gene

Human Gene Mutation Database (HGMD)
CYP26A1
The Human Cytochrome P450 Allele Nomenclature Database
CYP26A1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CYP26A1 Gene

Disorders for CYP26A1 Gene

MalaCards: The human disease database

(7) MalaCards diseases for CYP26A1 Gene - From: DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
caudal regression syndrome
  • caudal dysplasia
mixed germ cell cancer
  • mixed germ cell neoplasm
leukemia, acute promyelocytic, somatic
  • leukemia, acute promyelocytic
keratomalacia
  • night blindness
diffuse idiopathic skeletal hyperostosis
  • ankylosing vertebral hyperostosis
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for CYP26A1

Genetic Association Database (GAD)
CYP26A1
Human Genome Epidemiology (HuGE) Navigator
CYP26A1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CYP26A1
genes like me logo Genes that share disorders with CYP26A1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CYP26A1 Gene

Publications for CYP26A1 Gene

  1. cDNA cloning of human retinoic acid-metabolizing enzyme (hP450RAI) identifies a novel family of cytochromes P450. (PMID: 9228017) White J.A. … Petkovich M. (J. Biol. Chem. 1997) 2 3 4 23 67
  2. SuperCYP: a comprehensive database on Cytochrome P450 enzymes including a tool for analysis of CYP-drug interactions. (PMID: 19934256) Preissner S. … Preissner R. (Nucleic Acids Res. 2010) 25 26
  3. Expression and functional characterization of cytochrome P450 26A1, a retinoic acid hydroxylase. (PMID: 18992717) Lutz J.D. … Isoherranen N. (Biochem. Pharmacol. 2009) 3 23
  4. Pharmacogenomic analysis of acute promyelocytic leukemia cells highlights CYP26 cytochrome metabolism in differential all-trans retinoic acid sensitivity. (PMID: 17218384) Quere R. … Commes T. (Blood 2007) 3 23
  5. The discovery of new coding alleles of human CYP26A1 that are potentially defective in the metabolism of all-trans retinoic acid and their assessment in a recombinant cDNA expression system. (PMID: 17460545) Lee S.J. … Goldstein J.A. (Pharmacogenet. Genomics 2007) 3 23

Products for CYP26A1 Gene

Sources for CYP26A1 Gene

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