Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SAMD13 Gene

Aliases for SAMD13 Gene

  • Sterile Alpha Motif Domain Containing 13 2 3
  • SAM Domain-Containing Protein 13 4

External Ids for SAMD13 Gene

Previous GeneCards Identifiers for SAMD13 Gene

  • GC01P084477
  • GC01P084536
  • GC01P084764
  • GC01P082874

Summaries for SAMD13 Gene

GeneCards Summary for SAMD13 Gene

SAMD13 (Sterile Alpha Motif Domain Containing 13) is a Protein Coding gene. An important paralog of this gene is SAMD1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAMD13 Gene

Genomics for SAMD13 Gene

Regulatory Elements for SAMD13 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SAMD13 Gene

Start:
84,298,366 bp from pter
End:
84,389,957 bp from pter
Size:
91,592 bases
Orientation:
Plus strand

Genomic View for SAMD13 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SAMD13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAMD13 Gene

Proteins for SAMD13 Gene

  • Protein details for SAMD13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VXD3-SAM13_HUMAN
    Recommended name:
    Sterile alpha motif domain-containing protein 13
    Protein Accession:
    Q5VXD3
    Secondary Accessions:
    • B3KPW8
    • D3DT11
    • Q53AI4
    • Q5VXD2
    • Q5VXD4

    Protein attributes for SAMD13 Gene

    Size:
    122 amino acids
    Molecular mass:
    13570 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SAMD13 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SAMD13 Gene

Proteomics data for SAMD13 Gene at MOPED

Post-translational modifications for SAMD13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAMD13 Gene

Domains for SAMD13 Gene

Gene Families for SAMD13 Gene

HGNC:
  • SAMD :Sterile alpha motif (SAM) domain containing

Protein Domains for SAMD13 Gene

Suggested Antigen Peptide Sequences for SAMD13 Gene

Graphical View of Domain Structure for InterPro Entry

Q5VXD3

UniProtKB/Swiss-Prot:

SAM13_HUMAN :
  • Q5VXD3
Domain:
  • Contains 1 SAM (sterile alpha motif) domain.
genes like me logo Genes that share domains with SAMD13: view

Function for SAMD13 Gene

Gene Ontology (GO) - Molecular Function for SAMD13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
GO:0043565 sequence-specific DNA binding --
genes like me logo Genes that share ontologies with SAMD13: view

Animal Model Products

CRISPR Products

miRNA for SAMD13 Gene

miRTarBase miRNAs that target SAMD13

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for SAMD13 Gene

Localization for SAMD13 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SAMD13 Gene COMPARTMENTS Subcellular localization image for SAMD13 gene
Compartment Confidence
cytosol 2
extracellular 1
nucleus 1

Gene Ontology (GO) - Cellular Components for SAMD13 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
genes like me logo Genes that share ontologies with SAMD13: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for SAMD13 Gene

Pathways for SAMD13 Gene

SuperPathways for SAMD13 Gene

No Data Available

Interacting Proteins for SAMD13 Gene

Gene Ontology (GO) - Biological Process for SAMD13 Gene

None

No data available for Pathways by source for SAMD13 Gene

Transcripts for SAMD13 Gene

Unigene Clusters for SAMD13 Gene

Sterile alpha motif domain containing 13:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SAMD13

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SAMD13
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SAMD13 Gene

No ASD Table

Relevant External Links for SAMD13 Gene

GeneLoc Exon Structure for
SAMD13
ECgene alternative splicing isoforms for
SAMD13

Expression for SAMD13 Gene

mRNA expression in normal human tissues for SAMD13 Gene

mRNA differential expression in normal tissues according to GTEx for SAMD13 Gene

This gene is overexpressed in Colon - Transverse (6.2) and Testis (5.9).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SAMD13 Gene

SOURCE GeneReport for Unigene cluster for SAMD13 Gene Hs.591445

genes like me logo Genes that share expressions with SAMD13: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SAMD13 Gene

Orthologs for SAMD13 Gene

This gene was present in the common ancestor of animals.

Orthologs for SAMD13 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SAMD13 35
  • 99.71 (n)
  • 100 (a)
SAMD13 36
  • 92 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SAMD13 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Samd13 16
Samd13 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SAMD13 36
  • 23 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SAMD13 36
  • 87 (a)
OneToOne
chicken
(Gallus gallus)
Aves SAMD13 36
  • 34 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SAMD13 36
  • 86 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.32470 35
tropical clawed frog
(Silurana tropicalis)
Amphibia samd13 35
  • 77.24 (n)
  • 82.69 (a)
zebrafish
(Danio rerio)
Actinopterygii samd13 35
  • 73.54 (n)
  • 80.41 (a)
samd13 36
  • 80 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG2662 36
  • 9 (a)
OneToMany
Species with no ortholog for SAMD13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SAMD13 Gene

ENSEMBL:
Gene Tree for SAMD13 (if available)
TreeFam:
Gene Tree for SAMD13 (if available)

Paralogs for SAMD13 Gene

Paralogs for SAMD13 Gene

Selected SIMAP similar genes for SAMD13 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with SAMD13: view

Variants for SAMD13 Gene

Sequence variations from dbSNP and Humsavar for SAMD13 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs160612 -- 84,342,742(-) ttata(C/G)tttgg intron-variant
rs170278 -- 84,347,852(-) GCTTC(C/T)TATTT intron-variant
rs172735 -- 84,341,451(-) TTGCA(C/G)TGTAC intron-variant
rs172736 -- 84,329,503(-) AAGAG(G/T)TCACG intron-variant
rs178367 -- 84,346,419(-) CATTG(A/T)TTGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SAMD13 Gene

Variant ID Type Subtype PubMed ID
nsv830414 CNV Gain 17160897
nsv830426 CNV Gain 17160897
nsv1744 CNV Insertion 18451855

Relevant External Links for SAMD13 Gene

HapMap Linkage Disequilibrium report
SAMD13

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SAMD13 Gene

Disorders for SAMD13 Gene

No disorders were found for SAMD13 Gene.

No data available for UniProtKB/Swiss-Prot for SAMD13 Gene

Publications for SAMD13 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  3. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SAMD13 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate SAMD13
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat
  • Predesigned siRNA for gene silencing in human,mouse,rat for SAMD13
  • Block miRNA regulation of SAMD13 using miScript Target Protectors

Sources for SAMD13 Gene

Back to Top

Content