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Aliases for SAMD13 Gene

Aliases for SAMD13 Gene

  • Sterile Alpha Motif Domain Containing 13 2 3 5
  • SAM Domain-Containing Protein 13 3 4
  • Dnaj-Like Protein (LOC148418) 3
  • HSD-41 3
  • HSD-42 3

External Ids for SAMD13 Gene

Previous GeneCards Identifiers for SAMD13 Gene

  • GC01P084477
  • GC01P084536
  • GC01P084764
  • GC01P082874
  • GC01P084298

Summaries for SAMD13 Gene

GeneCards Summary for SAMD13 Gene

SAMD13 (Sterile Alpha Motif Domain Containing 13) is a Protein Coding gene. GO annotations related to this gene include sequence-specific DNA binding. An important paralog of this gene is SAMD1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SAMD13 Gene

Genomics for SAMD13 Gene

Regulatory Elements for SAMD13 Gene

Enhancers for SAMD13 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SAMD13 on UCSC Golden Path with GeneCards custom track

Genomic Location for SAMD13 Gene

84,274,952 bp from pter
84,389,957 bp from pter
115,006 bases
Plus strand

Genomic View for SAMD13 Gene

Genes around SAMD13 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SAMD13 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SAMD13 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SAMD13 Gene

Proteins for SAMD13 Gene

  • Protein details for SAMD13 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Sterile alpha motif domain-containing protein 13
    Protein Accession:
    Secondary Accessions:
    • B3KPW8
    • D3DT11
    • Q53AI4
    • Q5VXD2
    • Q5VXD4

    Protein attributes for SAMD13 Gene

    122 amino acids
    Molecular mass:
    13570 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SAMD13 Gene


neXtProt entry for SAMD13 Gene

Proteomics data for SAMD13 Gene at MOPED

Post-translational modifications for SAMD13 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SAMD13 Gene

Domains & Families for SAMD13 Gene

Gene Families for SAMD13 Gene

Protein Domains for SAMD13 Gene


Suggested Antigen Peptide Sequences for SAMD13 Gene

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 SAM (sterile alpha motif) domain.
  • Contains 1 SAM (sterile alpha motif) domain.
genes like me logo Genes that share domains with SAMD13: view

Function for SAMD13 Gene

Phenotypes for SAMD13 Gene

genes like me logo Genes that share phenotypes with SAMD13: view

Animal Model Products

CRISPR Products

miRNA for SAMD13 Gene

miRTarBase miRNAs that target SAMD13

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SAMD13 Gene

Localization for SAMD13 Gene

Subcellular locations from

Jensen Localization Image for SAMD13 Gene COMPARTMENTS Subcellular localization image for SAMD13 gene
Compartment Confidence
cytosol 2
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SAMD13 Gene

Pathways & Interactions for SAMD13 Gene

SuperPathways for SAMD13 Gene

No Data Available

Interacting Proteins for SAMD13 Gene

Gene Ontology (GO) - Biological Process for SAMD13 Gene


No data available for Pathways by source and SIGNOR curated interactions for SAMD13 Gene

Drugs & Compounds for SAMD13 Gene

No Compound Related Data Available

Transcripts for SAMD13 Gene

Unigene Clusters for SAMD13 Gene

Sterile alpha motif domain containing 13:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SAMD13 Gene

No ASD Table

Relevant External Links for SAMD13 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SAMD13 Gene

mRNA expression in normal human tissues for SAMD13 Gene

mRNA differential expression in normal tissues according to GTEx for SAMD13 Gene

This gene is overexpressed in Colon - Transverse (x6.2) and Testis (x5.9).

Protein differential expression in normal tissues from HIPED for SAMD13 Gene

This gene is overexpressed in Skin (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SAMD13 Gene

SOURCE GeneReport for Unigene cluster for SAMD13 Gene Hs.591445

genes like me logo Genes that share expression patterns with SAMD13: view

Protein tissue co-expression partners for SAMD13 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SAMD13 Gene

Orthologs for SAMD13 Gene

This gene was present in the common ancestor of animals.

Orthologs for SAMD13 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia SAMD13 35
  • 99.71 (n)
  • 100 (a)
SAMD13 36
  • 92 (a)
(Bos Taurus)
Mammalia SAMD13 36
  • 97 (a)
(Monodelphis domestica)
Mammalia SAMD13 36
  • 23 (a)
(Mus musculus)
Mammalia Samd13 36
  • 94 (a)
(Ornithorhynchus anatinus)
Mammalia SAMD13 36
  • 87 (a)
(Gallus gallus)
Aves SAMD13 36
  • 34 (a)
(Anolis carolinensis)
Reptilia SAMD13 36
  • 86 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia samd13 35
  • 77.24 (n)
  • 82.69 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.32470 35
(Danio rerio)
Actinopterygii samd13 35
  • 73.54 (n)
  • 80.41 (a)
samd13 36
  • 80 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG2662 36
  • 9 (a)
Species with no ortholog for SAMD13:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SAMD13 Gene

Gene Tree for SAMD13 (if available)
Gene Tree for SAMD13 (if available)

Paralogs for SAMD13 Gene

Paralogs for SAMD13 Gene

(13) SIMAP similar genes for SAMD13 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with SAMD13: view

Variants for SAMD13 Gene

Sequence variations from dbSNP and Humsavar for SAMD13 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs160612 -- 84,342,742(-) ttata(C/G)tttgg intron-variant
rs170278 -- 84,347,852(-) GCTTC(C/T)TATTT intron-variant
rs172735 -- 84,341,451(-) TTGCA(C/G/T)TGTAC intron-variant
rs172736 -- 84,329,503(-) AAGAG(G/T)TCACG intron-variant
rs178367 -- 84,346,419(-) CATTG(A/T)TTGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SAMD13 Gene

Variant ID Type Subtype PubMed ID
nsv830414 CNV Gain 17160897
nsv830426 CNV Gain 17160897
nsv1744 CNV Insertion 18451855

Variation tolerance for SAMD13 Gene

Residual Variation Intolerance Score: 48% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.10; 2.26% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SAMD13 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SAMD13 Gene

Disorders for SAMD13 Gene

Relevant External Links for SAMD13

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SAMD13 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SAMD13 Gene

Publications for SAMD13 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 67
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SAMD13 Gene

Sources for SAMD13 Gene