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Aliases for STK35 Gene

Aliases for STK35 Gene

  • Serine/Threonine Kinase 35 2 3 5
  • Serine/Threonine-Protein Kinase 35 L1 3 4
  • CLP-36-Interacting Kinase 1 3 4
  • PDLIM1-Interacting Kinase 1 3 4
  • CLP-36 Interacting Kinase 2 3
  • EC 2.7.11.1 4 61
  • STK35L1 3 4
  • CLIK-1 3 4
  • CLIK1 3 4
  • Serine Threonine Kinase 35 Long Form 3
  • Serine/Threonine-Protein Kinase 35 3
  • EC 2.7.11 61
  • PDIK1 4

External Ids for STK35 Gene

Previous GeneCards Identifiers for STK35 Gene

  • GC20P002070
  • GC20P002078
  • GC20P002031
  • GC20P002030

Summaries for STK35 Gene

Entrez Gene Summary for STK35 Gene

  • The protein encoded by this gene is a kinase that is predominantly found in the nucleus. However, it can interact with PDLIM1/CLP-36 in the cytoplasm and localize to actin stress fibers. The encoded protein may be a regulator of actin stress fibers in nonmuscle cells. [provided by RefSeq, Jul 2008]

GeneCards Summary for STK35 Gene

STK35 (Serine/Threonine Kinase 35) is a Protein Coding gene. Among its related pathways are Sweet Taste Signaling. GO annotations related to this gene include transferase activity, transferring phosphorus-containing groups and protein tyrosine kinase activity. An important paralog of this gene is PDIK1L.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STK35 Gene

Genomics for STK35 Gene

Regulatory Elements for STK35 Gene

Enhancers for STK35 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G002130 1.3 Ensembl ENCODE dbSUPER 9.6 +33.1 33132 5.3 BMI1 EBF1 CTBP1 GATA3 EGR1 EED SCRT2 RELB FOS CREM STK35 GC20M002129 PIR45977 GC20P002145
GH20G002150 0.9 ENCODE dbSUPER 11.2 +52.0 51955 1.8 MTA2 NR2F1 MNT DPF2 CTBP1 JUND GLIS1 FOS PRDM10 SP7 STK35 PIR47950 GC20P002190
GH20G002137 1.1 ENCODE dbSUPER 8.8 +37.9 37895 1.3 HDAC1 TBL1XR1 DDX20 TAL1 JUN CEBPG FOSL1 TCF12 IRF9 NCOR1 STK35 GC20M002129 PIR45977 GC20P002145
GH20G002101 1.4 ENCODE dbSUPER 5.8 +3.3 3273 4.1 HNRNPUL1 PKNOX1 FOXA2 CREB3L1 ARNT ZFP64 WRNIP1 ARID4B SIN3A FEZF1 VPS16 STK35 GC20M002101 GC20M002129
GH20G002126 0.6 dbSUPER 12 +27.7 27658 1.1 PKNOX1 MTA2 BHLHE40 NBN RELB RBFOX2 STK35 GC20M002129 GC20M002101
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around STK35 on UCSC Golden Path with GeneCards custom track

Genomic Location for STK35 Gene

Chromosome:
20
Start:
2,099,799 bp from pter
End:
2,177,038 bp from pter
Size:
77,240 bases
Orientation:
Plus strand

Genomic View for STK35 Gene

Genes around STK35 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
STK35 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for STK35 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STK35 Gene

Proteins for STK35 Gene

  • Protein details for STK35 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TDR2-STK35_HUMAN
    Recommended name:
    Serine/threonine-protein kinase 35
    Protein Accession:
    Q8TDR2
    Secondary Accessions:
    • B2RBM3
    • C7ENV8
    • Q2NKW6
    • Q5T3R1
    • Q5T3R2
    • Q96AB4
    • Q9BZ06

    Protein attributes for STK35 Gene

    Size:
    534 amino acids
    Molecular mass:
    58051 Da
    Quaternary structure:
    • Interacts with PDLIM1/CLP-36.
    Miscellaneous:
    • Association with PDLIM1 is controversial.
    SequenceCaution:
    • Sequence=AAI40884.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAI40885.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAG37270.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAI15590.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for STK35 Gene

Selected DME Specific Peptides for STK35 Gene

Q8TDR2:
  • RVAVKKIRC
  • MLAANPQDRPDAFELE
  • KQGTEIVPVGEALLENPKMEL
  • ERITFID
  • DLKPDNIL
  • DFYMAPEVWEGHYTAKADIFALGIIIWAM
  • VHRDLKP
  • IVHRDLK

Post-translational modifications for STK35 Gene

Other Protein References for STK35 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains & Families for STK35 Gene

Gene Families for STK35 Gene

Protein Domains for STK35 Gene

Suggested Antigen Peptide Sequences for STK35 Gene

Graphical View of Domain Structure for InterPro Entry

Q8TDR2

UniProtKB/Swiss-Prot:

STK35_HUMAN :
  • Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
Family:
  • Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
genes like me logo Genes that share domains with STK35: view

Function for STK35 Gene

Molecular function for STK35 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + a protein = ADP + a phosphoprotein.

Enzyme Numbers (IUBMB) for STK35 Gene

Gene Ontology (GO) - Molecular Function for STK35 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004672 protein kinase activity IEA --
GO:0004674 protein serine/threonine kinase activity IEA --
GO:0005524 ATP binding IEA --
GO:0016301 kinase activity IEA --
GO:0016740 transferase activity IEA --
genes like me logo Genes that share ontologies with STK35: view
genes like me logo Genes that share phenotypes with STK35: view

Animal Model Products

  • Taconic Biosciences Mouse Models for STK35

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for STK35 Gene

Localization for STK35 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STK35 Gene

Nucleus. Nucleus, nucleolus. Cytoplasm. Note=When associated with PDLIM1, it is mostly found in cytoplasm, localized to actin stress fibers (PubMed:11973348). However, PubMed:19756140 detected STK35 only in the nucleus, and the presence of PDLIM1 had no influence on its location. {ECO:0000269 PubMed:11973348}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for STK35 gene
Compartment Confidence
nucleus 5
cytosol 2
plasma membrane 1
extracellular 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for STK35 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005730 nucleolus IEA --
GO:0005737 cytoplasm IEA --
GO:0016604 nuclear body IDA --
genes like me logo Genes that share ontologies with STK35: view

Pathways & Interactions for STK35 Gene

SuperPathways for STK35 Gene

SuperPathway Contained pathways
1 Sweet Taste Signaling
genes like me logo Genes that share pathways with STK35: view

Pathways by source for STK35 Gene

1 Qiagen pathway for STK35 Gene

Gene Ontology (GO) - Biological Process for STK35 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006468 protein phosphorylation IEA --
GO:0016310 phosphorylation IEA --
genes like me logo Genes that share ontologies with STK35: view

No data available for SIGNOR curated interactions for STK35 Gene

Drugs & Compounds for STK35 Gene

(1) Drugs for STK35 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Adenosine triphosphate Approved Nutra 0

(1) Additional Compounds for STK35 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Full agonist, Agonist 58-64-0
genes like me logo Genes that share compounds with STK35: view

Transcripts for STK35 Gene

mRNA/cDNA for STK35 Gene

Unigene Clusters for STK35 Gene

Serine/threonine kinase 35:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for STK35 Gene

No ASD Table

Relevant External Links for STK35 Gene

GeneLoc Exon Structure for
STK35
ECgene alternative splicing isoforms for
STK35

Expression for STK35 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for STK35 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for STK35 Gene

This gene is overexpressed in Bone marrow mesenchymal stem cell (56.0) and Stomach (12.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for STK35 Gene



Protein tissue co-expression partners for STK35 Gene

NURSA nuclear receptor signaling pathways regulating expression of STK35 Gene:

STK35

SOURCE GeneReport for Unigene cluster for STK35 Gene:

Hs.100057

mRNA Expression by UniProt/SwissProt for STK35 Gene:

Q8TDR2-STK35_HUMAN
Tissue specificity: Expressed in testis.

Evidence on tissue expression from TISSUES for STK35 Gene

  • Nervous system(4.5)
  • Skin(4.2)
genes like me logo Genes that share expression patterns with STK35: view

Primer Products

No data available for mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for STK35 Gene

Orthologs for STK35 Gene

This gene was present in the common ancestor of animals.

Orthologs for STK35 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia STK35 34 35
  • 99.63 (n)
oppossum
(Monodelphis domestica)
Mammalia STK35 35
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia STK35 34 35
  • 96.01 (n)
dog
(Canis familiaris)
Mammalia STK35 34 35
  • 91.37 (n)
rat
(Rattus norvegicus)
Mammalia Stk35 34
  • 89.29 (n)
mouse
(Mus musculus)
Mammalia Stk35 34 16 35
  • 88.72 (n)
chicken
(Gallus gallus)
Aves STK35 34 35
  • 81.1 (n)
lizard
(Anolis carolinensis)
Reptilia STK35 35
  • 91 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100497495 34
  • 78.94 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.4235 34
zebrafish
(Danio rerio)
Actinopterygii stk35 35 35
  • 72 (a)
OneToMany
LOC100536261 34
  • 71.24 (n)
stk35l 35
  • 71 (a)
OneToMany
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.2540 34
worm
(Caenorhabditis elegans)
Secernentea zyg-1 35
  • 12 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8364 35
  • 53 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.7714 34
Species where no ortholog for STK35 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for STK35 Gene

ENSEMBL:
Gene Tree for STK35 (if available)
TreeFam:
Gene Tree for STK35 (if available)

Paralogs for STK35 Gene

Paralogs for STK35 Gene

(4) SIMAP similar genes for STK35 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with STK35: view

Variants for STK35 Gene

Sequence variations from dbSNP and Humsavar for STK35 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000064061 -- 2,136,766(+) GACTC(C/T)CTCTG intron-variant
rs1000081791 -- 2,142,952(+) CTTGT(C/G)TTATT intron-variant
rs1000178718 -- 2,121,175(+) ATGGA(A/G)AGCCA intron-variant
rs1000219183 -- 2,134,853(+) GTCAT(C/T)GCACT intron-variant
rs1000285475 -- 2,129,285(+) GCCTC(C/T)GAGTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for STK35 Gene

Variant ID Type Subtype PubMed ID
esv3644997 CNV loss 21293372
nsv3258 CNV insertion 18451855
nsv470535 CNV gain 18288195

Variation tolerance for STK35 Gene

Residual Variation Intolerance Score: 26.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.01; 80.09% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for STK35 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
STK35

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for STK35 Gene

Disorders for STK35 Gene

Relevant External Links for STK35

Genetic Association Database (GAD)
STK35
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
STK35

No disorders were found for STK35 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for STK35 Gene

Publications for STK35 Gene

  1. Identifying and characterizing a novel protein kinase STK35L1 and deciphering its orthologs and close-homologs in vertebrates. (PMID: 19756140) Goyal P. … Siess W. (PLoS ONE 2009) 3 4 22 64
  2. Clik1: a novel kinase targeted to actin stress fibers by the CLP-36 PDZ-LIM protein. (PMID: 11973348) Vallenius T. … Maekelae T.P. (J. Cell Sci. 2002) 2 3 4 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4 64

Products for STK35 Gene

Sources for STK35 Gene

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