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Aliases for STK35 Gene

Aliases for STK35 Gene

  • Serine/Threonine Kinase 35 2 3
  • CLIK1 3 4 6
  • Serine/Threonine-Protein Kinase 35 L1 3 4
  • CLP-36-Interacting Kinase 1 3 4
  • PDLIM1-Interacting Kinase 1 3 4
  • CLP-36 Interacting Kinase 2 3
  • EC 2.7.11.1 4 63
  • STK35L1 3 4
  • CLIK-1 3 4
  • Serine Threonine Kinase 35 Long Form 3
  • Serine/Threonine-Protein Kinase 35 3
  • EC 2.7.11 63
  • PDIK1 4

External Ids for STK35 Gene

Previous GeneCards Identifiers for STK35 Gene

  • GC20P002070
  • GC20P002078
  • GC20P002031
  • GC20P002030

Summaries for STK35 Gene

Entrez Gene Summary for STK35 Gene

  • The protein encoded by this gene is a kinase that is predominantly found in the nucleus. However, it can interact with PDLIM1/CLP-36 in the cytoplasm and localize to actin stress fibers. The encoded protein may be a regulator of actin stress fibers in nonmuscle cells. [provided by RefSeq, Jul 2008]

GeneCards Summary for STK35 Gene

STK35 (Serine/Threonine Kinase 35) is a Protein Coding gene. Among its related pathways are Sweet Taste Signaling. GO annotations related to this gene include protein serine/threonine kinase activity. An important paralog of this gene is ULK3.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for STK35 Gene

Genomics for STK35 Gene

Regulatory Elements for STK35 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for STK35 Gene

Start:
2,101,611 bp from pter
End:
2,177,038 bp from pter
Size:
75,428 bases
Orientation:
Plus strand

Genomic View for STK35 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for STK35 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for STK35 Gene

Proteins for STK35 Gene

  • Protein details for STK35 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TDR2-STK35_HUMAN
    Recommended name:
    Serine/threonine-protein kinase 35
    Protein Accession:
    Q8TDR2
    Secondary Accessions:
    • B2RBM3
    • C7ENV8
    • Q2NKW6
    • Q5T3R1
    • Q5T3R2
    • Q96AB4
    • Q9BZ06

    Protein attributes for STK35 Gene

    Size:
    534 amino acids
    Molecular mass:
    58051 Da
    Quaternary structure:
    • Interacts with PDLIM1/CLP-36
    Miscellaneous:
    • Association with PDLIM1 is controversial.
    SequenceCaution:
    • Sequence=AAI40884.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAI40885.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAG37270.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAI15590.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for STK35 Gene

Proteomics data for STK35 Gene at MOPED

Post-translational modifications for STK35 Gene

Other Protein References for STK35 Gene

ENSEMBL proteins:
REFSEQ proteins:

Domains for STK35 Gene

Gene Families for STK35 Gene

Protein Domains for STK35 Gene

Suggested Antigen Peptide Sequences for STK35 Gene

Graphical View of Domain Structure for InterPro Entry

Q8TDR2

UniProtKB/Swiss-Prot:

STK35_HUMAN :
  • Q8TDR2
Domain:
  • Contains 1 protein kinase domain.
Family:
  • Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
genes like me logo Genes that share domains with STK35: view

Function for STK35 Gene

Molecular function for STK35 Gene

UniProtKB/Swiss-Prot CatalyticActivity: ATP + a protein = ADP + a phosphoprotein

Enzyme Numbers (IUBMB) for STK35 Gene

Gene Ontology (GO) - Molecular Function for STK35 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004672 protein kinase activity --
GO:0004674 protein serine/threonine kinase activity IEA --
GO:0004713 protein tyrosine kinase activity --
GO:0005524 ATP binding IEA --
GO:0016772 transferase activity, transferring phosphorus-containing groups --
genes like me logo Genes that share ontologies with STK35: view
genes like me logo Genes that share phenotypes with STK35: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for STK35

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for STK35 Gene

Localization for STK35 Gene

Subcellular locations from UniProtKB/Swiss-Prot for STK35 Gene

Nucleus. Nucleus, nucleolus. Cytoplasm. Note=When associated with PDLIM1, it is mostly found in cytoplasm, localized to actin stress fibers (PubMed:11973348). However, PubMed:19756140 detected STK35 only in the nucleus, and the presence of PDLIM1 had no influence on its location. {ECO:0000269 PubMed:11973348}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for STK35 Gene COMPARTMENTS Subcellular localization image for STK35 gene
Compartment Confidence
nucleus 5
cytosol 2
extracellular 1
mitochondrion 1
peroxisome 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for STK35 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus --
GO:0005730 nucleolus IEA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with STK35: view

Pathways for STK35 Gene

SuperPathways for STK35 Gene

Superpath Contained pathways
1 Sweet Taste Signaling
genes like me logo Genes that share pathways with STK35: view

Pathways by source for STK35 Gene

1 Qiagen pathway for STK35 Gene

Gene Ontology (GO) - Biological Process for STK35 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006468 protein phosphorylation IEA --
genes like me logo Genes that share ontologies with STK35: view

Compounds for STK35 Gene

(2) HMDB Compounds for STK35 Gene

Compound Synonyms Cas Number PubMed IDs
Adenosine triphosphate
  • 5'-(tetrahydrogen triphosphate) Adenosine
56-65-5
ADP
  • adenosindiphosphorsaeure
58-64-0
genes like me logo Genes that share compounds with STK35: view

Transcripts for STK35 Gene

mRNA/cDNA for STK35 Gene

Unigene Clusters for STK35 Gene

Serine/threonine kinase 35:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for STK35

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for STK35

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for STK35 Gene

No ASD Table

Relevant External Links for STK35 Gene

GeneLoc Exon Structure for
STK35
ECgene alternative splicing isoforms for
STK35

Expression for STK35 Gene

mRNA expression in normal human tissues for STK35 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for STK35 Gene

SOURCE GeneReport for Unigene cluster for STK35 Gene Hs.100057

mRNA Expression by UniProt/SwissProt for STK35 Gene

Q8TDR2-STK35_HUMAN
Tissue specificity: Expressed in testis
genes like me logo Genes that share expressions with STK35: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for STK35 Gene

Orthologs for STK35 Gene

This gene was present in the common ancestor of animals.

Orthologs for STK35 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia STK35 35
  • 99.63 (n)
  • 99.44 (a)
STK35 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia STK35 35
  • 96.01 (n)
  • 98.5 (a)
STK35 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia STK35 35
  • 91.37 (n)
  • 91.37 (a)
STK35 36
  • 92 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Stk35 35
  • 88.72 (n)
  • 87.59 (a)
Stk35 16
Stk35 36
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia STK35 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Stk35 35
  • 89.29 (n)
  • 87.97 (a)
chicken
(Gallus gallus)
Aves STK35 35
  • 81.1 (n)
  • 86.86 (a)
STK35 36
  • 87 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia STK35 36
  • 91 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.4235 35
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100497495 35
  • 78.94 (n)
  • 91.36 (a)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.2540 35
zebrafish
(Danio rerio)
Actinopterygii LOC100536261 35
  • 71.24 (n)
  • 80.57 (a)
stk35 36
  • 72 (a)
OneToMany
stk35 36
  • 72 (a)
OneToMany
stk35l 36
  • 71 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea zyg-1 36
  • 12 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.7714 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8364 36
  • 53 (a)
OneToMany
Species with no ortholog for STK35:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for STK35 Gene

ENSEMBL:
Gene Tree for STK35 (if available)
TreeFam:
Gene Tree for STK35 (if available)

Paralogs for STK35 Gene

Paralogs for STK35 Gene

Selected SIMAP similar genes for STK35 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with STK35: view

Variants for STK35 Gene

Sequence variations from dbSNP and Humsavar for STK35 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs16432 -- 2,148,052(-) GGCAA(-/CGGCAGTGG)ACTCA cds-indel
rs947435 -- 2,144,999(-) TCCAC(A/G)ACACC utr-variant-3-prime
rs947436 -- 2,124,750(-) ACTAG(A/G)GTCTT intron-variant
rs947437 -- 2,121,547(-) ttgga(C/T)tctaa intron-variant
rs1341808 -- 2,100,457(+) ctggg(A/G)aatag upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for STK35 Gene

Variant ID Type Subtype PubMed ID
nsv470535 CNV Gain 18288195
dgv4517n71 CNV Loss 21882294
nsv3258 CNV Insertion 18451855

Relevant External Links for STK35 Gene

HapMap Linkage Disequilibrium report
STK35

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for STK35 Gene

Disorders for STK35 Gene

Relevant External Links for STK35

Genetic Association Database (GAD)
STK35
genes like me logo Genes that share disorders with STK35: view

No data available for UniProtKB/Swiss-Prot for STK35 Gene

Publications for STK35 Gene

  1. Identifying and characterizing a novel protein kinase STK35L1 and deciphering its orthologs and close-homologs in vertebrates. (PMID: 19756140) Goyal P. … Siess W. (PLoS ONE 2009) 3 4 23
  2. Clik1: a novel kinase targeted to actin stress fibers by the CLP-36 PDZ-LIM protein. (PMID: 11973348) Vallenius T. … Maekelae T.P. (J. Cell Sci. 2002) 2 3 4
  3. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for STK35 Gene

Sources for STK35 Gene

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