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Aliases for MUC17 Gene

Aliases for MUC17 Gene

  • Mucin 17, Cell Surface Associated 2 3
  • Small Intestinal Mucin-3 3 4
  • MUC-17 3 4
  • MUC-3 3 4
  • MUC3 3 4
  • Small Intestinal Mucin MUC3 3
  • Membrane Mucin MUC17 3
  • Secreted Mucin MUC17 3
  • EC 6.3.2.8 63
  • Mucin-17 3
  • EC 3.1.3 63

External Ids for MUC17 Gene

Previous GeneCards Identifiers for MUC17 Gene

  • GC07P099168
  • GC07P100231
  • GC07P100235
  • GC07P100276
  • GC07P100450
  • GC07P100663
  • GC07P100022

Summaries for MUC17 Gene

Entrez Gene Summary for MUC17 Gene

  • Membrane mucins, such as MUC17, function in epithelial cells to provide cytoprotection, maintain luminal structure, provide signal transduction, and confer antiadhesive properties upon cancer cells that lose their apical/basal polarization.[supplied by OMIM, Apr 2004]

GeneCards Summary for MUC17 Gene

MUC17 (Mucin 17, Cell Surface Associated) is a Protein Coding gene. Diseases associated with MUC17 include biliary papillomatosis and cholangiocarcinoma. Among its related pathways are Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. GO annotations related to this gene include PDZ domain binding and extracellular matrix constituent, lubricant activity. An important paralog of this gene is MUC12.

UniProtKB/Swiss-Prot for MUC17 Gene

  • Probably plays a role in maintaining homeostasis on mucosal surfaces.

Gene Wiki entry for MUC17 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MUC17 Gene

Genomics for MUC17 Gene

Regulatory Elements for MUC17 Gene

Genomic Location for MUC17 Gene

Start:
101,020,072 bp from pter
End:
101,058,859 bp from pter
Size:
38,788 bases
Orientation:
Plus strand

Genomic View for MUC17 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MUC17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MUC17 Gene

Proteins for MUC17 Gene

  • Protein details for MUC17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q685J3-MUC17_HUMAN
    Recommended name:
    Mucin-17
    Protein Accession:
    Q685J3
    Secondary Accessions:
    • O14761
    • Q685J2
    • Q8TDH7

    Protein attributes for MUC17 Gene

    Size:
    4493 amino acids
    Molecular mass:
    451741 Da
    Quaternary structure:
    • Interacts via its C-terminus with PDZK1 and this interaction appears important for proper localization.

    Alternative splice isoforms for MUC17 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for MUC17 Gene

Proteomics data for MUC17 Gene at MOPED

Selected DME Specific Peptides for MUC17 Gene

Post-translational modifications for MUC17 Gene

  • N-glycosylated. Contains high mannose and complex-type glycans. The forms containing the complex type glycans localize to the cell surface. Not O-glycosylated.
  • Probably cleaved within the SEA domain
  • Glycosylation at Ser56, Asn471, Asn696, Asn898, Asn1345, Asn2077, Asn2194, Asn3344, Asn4116, Asn4205, Asn4236, Asn4267, Asn4297, and Asn4305
  • Modification sites at PhosphoSitePlus

Other Protein References for MUC17 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

Domains for MUC17 Gene

Gene Families for MUC17 Gene

HGNC:

Protein Domains for MUC17 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for MUC17 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q685J3

UniProtKB/Swiss-Prot:

MUC17_HUMAN :
  • Q685J3
Domain:
  • Contains 1 EGF-like domain.
  • Contains 1 SEA domain.
genes like me logo Genes that share domains with MUC17: view

Function for MUC17 Gene

Molecular function for MUC17 Gene

UniProtKB/Swiss-Prot Function: Probably plays a role in maintaining homeostasis on mucosal surfaces.

Enzyme Numbers (IUBMB) for MUC17 Gene

Gene Ontology (GO) - Molecular Function for MUC17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 17990980
GO:0030165 PDZ domain binding IPI 17990980
GO:0030197 extracellular matrix constituent, lubricant activity NAS 9299468
genes like me logo Genes that share ontologies with MUC17: view

Phenotypes for MUC17 Gene

GenomeRNAi human phenotypes for MUC17:
genes like me logo Genes that share phenotypes with MUC17: view

Animal Model Products

CRISPR Products

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for MUC17 Gene

Localization for MUC17 Gene

Subcellular locations from UniProtKB/Swiss-Prot for MUC17 Gene

Isoform 1: Cell membrane; Single-pass membrane protein.
Isoform 2: Secreted. Cell membrane.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for MUC17 Gene COMPARTMENTS Subcellular localization image for MUC17 gene
Compartment Confidence
plasma membrane 5
extracellular 4
golgi apparatus 4
endoplasmic reticulum 1
lysosome 1

Gene Ontology (GO) - Cellular Components for MUC17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005796 Golgi lumen TAS --
GO:0009897 external side of plasma membrane IDA 12888891
GO:0016021 integral component of membrane IEA --
GO:0016324 apical plasma membrane IDA 17990980
genes like me logo Genes that share ontologies with MUC17: view

Pathways for MUC17 Gene

genes like me logo Genes that share pathways with MUC17: view

Interacting Proteins for MUC17 Gene

Gene Ontology (GO) - Biological Process for MUC17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006493 protein O-linked glycosylation TAS --
GO:0016266 O-glycan processing TAS --
GO:0019725 cellular homeostasis TAS 17990980
GO:0043687 post-translational protein modification TAS --
GO:0044267 cellular protein metabolic process TAS --
genes like me logo Genes that share ontologies with MUC17: view

Compounds for MUC17 Gene

(1) Novoseek inferred chemical compound relationships for MUC17 Gene

Compound -log(P) Hits PubMed IDs
serine 21.2 1
genes like me logo Genes that share compounds with MUC17: view

Transcripts for MUC17 Gene

Unigene Clusters for MUC17 Gene

Mucin 17, cell surface associated:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MUC17

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for MUC17
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MUC17 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11
SP1:
SP2: -

Relevant External Links for MUC17 Gene

GeneLoc Exon Structure for
MUC17
ECgene alternative splicing isoforms for
MUC17

Expression for MUC17 Gene

mRNA expression in normal human tissues for MUC17 Gene

mRNA differential expression in normal tissues according to GTEx for MUC17 Gene

This gene is overexpressed in Small Intestine - Terminal Ileum (48.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for MUC17 Gene

SOURCE GeneReport for Unigene cluster for MUC17 Gene Hs.271819

mRNA Expression by UniProt/SwissProt for MUC17 Gene

Q685J3-MUC17_HUMAN
Tissue specificity: Expressed almost exclusively in the intestine. Expression is especially high in both the duodenum and transverse colon. Expressed in mature absorptive cells of the small intestinal villi. No expression is detected in goblet cells. Highly expressed in pancreatic adenocarcinoma tissue (at protein level). Expression is not detectable in normal pancreas, in pancreatitis or in cell lines derived from other cancers.
genes like me logo Genes that share expressions with MUC17: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for MUC17 Gene

Orthologs for MUC17 Gene

This gene was present in the common ancestor of chordates.

Orthologs for MUC17 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia MUC17 35
  • 85.21 (n)
  • 73.23 (a)
cow
(Bos Taurus)
Mammalia -- 36
  • 18 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia MUC17 36
  • 20 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Muc3 16
Muc3 36
  • 43 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia MUC17 36
  • 35 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 38 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 29 (a)
ManyToMany
Species with no ortholog for MUC17:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MUC17 Gene

ENSEMBL:
Gene Tree for MUC17 (if available)
TreeFam:
Gene Tree for MUC17 (if available)

Paralogs for MUC17 Gene

Paralogs for MUC17 Gene

Selected SIMAP similar genes for MUC17 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with MUC17: view

Variants for MUC17 Gene

Sequence variations from dbSNP and Humsavar for MUC17 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs4236553 -- 101,057,495(+) CCCAG(A/C)ACTTC intron-variant
rs4268055 -- 101,057,033(+) TGCCC(A/C)CCCAT intron-variant
rs4269454 - 101,035,459(+) CACAC(C/T)GGTGG missense, reference
rs4367469 - 101,035,539(+) AAGCC(C/T)GTTCA missense, reference
rs4373459 -- 101,034,275(+) AGCAC(A/C)CCTGT reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for MUC17 Gene

Variant ID Type Subtype PubMed ID
esv2734888 CNV Deletion 23290073
dgv2119e1 CNV Complex 17122850
dgv2120e1 CNV Complex 17122850
nsv428181 CNV Gain+Loss 18775914
nsv831074 CNV Loss 17160897
nsv5872 CNV Insertion 18451855
esv23580 CNV Gain 19812545
nsv820525 CNV Duplication 20802225
nsv8188 CNV Gain 18304495
esv2663086 CNV Deletion 23128226
dgv1156e201 CNV Deletion 23290073
dgv1157e201 CNV Deletion 23290073
esv2734915 CNV Deletion 23290073
esv2673265 CNV Deletion 23128226
nsv366275 CNV Loss 16902084
esv2734923 CNV Deletion 23290073
esv2669267 CNV Deletion 23128226
esv2734924 CNV Deletion 23290073
nsv366400 CNV Loss 16902084
dgv1229e199 CNV Deletion 23128226
nsv5873 CNV Insertion 18451855
nsv831075 CNV Loss 17160897

Relevant External Links for MUC17 Gene

HapMap Linkage Disequilibrium report
MUC17
Human Gene Mutation Database (HGMD)
MUC17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MUC17 Gene

Disorders for MUC17 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (2) Diseases for MUC17 Gene including...

Search for MUC17 Gene in MalaCards »

(7) Novoseek inferred disease relationships for MUC17 Gene

Disease -log(P) Hits PubMed IDs
cholangiocarcinoma 42.2 1
adenocarcinoma 28.8 3
dysplasia 20.9 2
colon cancer 20.4 1
carcinoma 18.8 1
genes like me logo Genes that share disorders with MUC17: view

No data available for UniProtKB/Swiss-Prot for MUC17 Gene

Publications for MUC17 Gene

  1. MUC17, a novel membrane-tethered mucin. (PMID: 11855812) Gum J.R. Jr. … Kim Y.S. (Biochem. Biophys. Res. Commun. 2002) 2 3 4 23
  2. Characterization of human mucin MUC17. Complete coding sequence and organization. (PMID: 16737958) Moniaux N. … Batra S.K. (J. Biol. Chem. 2006) 3 4
  3. The C-terminus of the transmembrane mucin MUC17 binds to the scaffold protein PDZK1 that stably localizes it to the enterocyte apical membrane in the small intestine. (PMID: 17990980) Malmberg E.K. … Hansson G.C. (Biochem. J. 2008) 3 4
  4. Human intestinal MUC17 mucin augments intestinal cell restitution and enhances healing of experimental colitis. (PMID: 20211273) Luu Y. … Ho S.B. (Int. J. Biochem. Cell Biol. 2010) 3 23
  5. Molecular cloning of human MUC3 cDNA reveals a novel 59 amino acid tandem repeat region. (PMID: 9299468) Van Klinken B.J.-W. … Einerhand A.W. (Biochem. Biophys. Res. Commun. 1997) 3 4

Products for MUC17 Gene

Sources for MUC17 Gene

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