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Aliases for ADH6 Gene

Aliases for ADH6 Gene

  • Alcohol Dehydrogenase 6 (Class V) 2 3 5
  • EC 1.1.1.1 4 61
  • Alcohol Dehydrogenase 6 3
  • Aldehyde Reductase 3
  • EC 1.1.1 61
  • ADH-5 3

External Ids for ADH6 Gene

Previous GeneCards Identifiers for ADH6 Gene

  • GC04M100373
  • GC04M100516
  • GC04M100584
  • GC04M100480
  • GC04M100123
  • GC04M095861

Summaries for ADH6 Gene

Entrez Gene Summary for ADH6 Gene

  • This gene encodes class V alcohol dehydrogenase, which is a member of the alcohol dehydrogenase family. Members of this family metabolize a wide variety of substrates, including ethanol, retinol, other aliphatic alcohols, hydroxysteroids, and lipid peroxidation products. This gene is expressed in the stomach as well as in the liver, and it contains a glucocorticoid response element upstream of its 5' UTR, which is a steroid hormone receptor binding site. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for ADH6 Gene

ADH6 (Alcohol Dehydrogenase 6 (Class V)) is a Protein Coding gene. Diseases associated with ADH6 include Fetal Alcohol Spectrum Disorder and Alcohol Dependence. Among its related pathways are Cytochrome P450 - arranged by substrate type and superpathway of tryptophan utilization. GO annotations related to this gene include oxidoreductase activity and alcohol dehydrogenase (NAD) activity. An important paralog of this gene is ADH1B.

Gene Wiki entry for ADH6 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ADH6 Gene

Genomics for ADH6 Gene

Regulatory Elements for ADH6 Gene

Enhancers for ADH6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04G099402 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -184.9 -184926 3.6 PKNOX1 FOXA2 ARID4B DMAP1 YY1 CBX5 ZNF143 ZNF207 FOS JUNB ADH4 ADH6 LOC100507053 PCNAP1 ADH5 ADH1A ADH1B ADH1C LOC102723576
GH04G099180 0.6 ENCODE 23.1 +38.6 38574 1.4 NR2F1 JUNB GATAD2B BMI1 DPF2 TBX21 ZNF316 IKZF1 RELB IKZF2 ADH6 LOC100507053 ADH4 ENSG00000272777 PCNAP2
GH04G099204 0.9 Ensembl ENCODE 12.1 +14.1 14109 1.1 CTCF SOX13 HLF CEBPB CEBPG PPARG RAD21 JUND NCOR1 SMARCA4 ADH6 PCNAP1 ADH4 LOC100507053 PCNAP2
GH04G099351 0.4 FANTOM5 24.4 -132.0 -132013 0.4 FOXA1 ADH6 ADH1A ADH1C ADH4 ADH1B PIR40463
GH04G099143 0.9 ENCODE 9.9 +75.2 75170 1.5 ELF3 TBP FOXA2 RAD21 YY1 CREM THAP11 HMG20B CEBPB KAT8 LOC100507053 ADH4 ADH5 ADH1A ADH6 PIR42405
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around ADH6 on UCSC Golden Path with GeneCards custom track

Genomic Location for ADH6 Gene

Chromosome:
4
Start:
99,202,638 bp from pter
End:
99,219,537 bp from pter
Size:
16,900 bases
Orientation:
Minus strand

Genomic View for ADH6 Gene

Genes around ADH6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ADH6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ADH6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ADH6 Gene

Proteins for ADH6 Gene

  • Protein details for ADH6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P28332-ADH6_HUMAN
    Recommended name:
    Alcohol dehydrogenase 6
    Protein Accession:
    P28332
    Secondary Accessions:
    • B3KS45
    • Q58F53

    Protein attributes for ADH6 Gene

    Size:
    368 amino acids
    Molecular mass:
    39089 Da
    Cofactor:
    Name=Zn(2+); Xref=ChEBI:CHEBI:29105;
    Quaternary structure:
    No Data Available
    Miscellaneous:
    • There are 7 different ADHs isozymes in human: three belongs to class-I: alpha, beta, and gamma, one to class-II: pi, one to class-III: chi, one to class-IV: ADH7 and one to class-V: ADH6.

    Alternative splice isoforms for ADH6 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for ADH6 Gene

Selected DME Specific Peptides for ADH6 Gene

P28332:
  • EVAPPKA
  • RFTCKGK
  • CAVFGLGGVGLS
  • EEVEVAPP
  • AKVTPGS
  • KPIQEVL
  • DPLITHTL
  • LGHEGAGIVES
  • VMGCKAAGA
  • KGSVFGG
  • PLEKVCL

Post-translational modifications for ADH6 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for ADH6 Gene

Domains & Families for ADH6 Gene

Gene Families for ADH6 Gene

Suggested Antigen Peptide Sequences for ADH6 Gene

Graphical View of Domain Structure for InterPro Entry

P28332

UniProtKB/Swiss-Prot:

ADH6_HUMAN :
  • Belongs to the zinc-containing alcohol dehydrogenase family. Class-V subfamily.
Family:
  • Belongs to the zinc-containing alcohol dehydrogenase family. Class-V subfamily.
genes like me logo Genes that share domains with ADH6: view

Function for ADH6 Gene

Molecular function for ADH6 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
An alcohol + NAD(+) = an aldehyde or ketone + NADH.

Enzyme Numbers (IUBMB) for ADH6 Gene

Gene Ontology (GO) - Molecular Function for ADH6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004022 alcohol dehydrogenase (NAD) activity IDA 1755855
GO:0004024 alcohol dehydrogenase activity, zinc-dependent EXP 9982
GO:0008270 zinc ion binding NAS,IEA 1593644
GO:0016491 oxidoreductase activity IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with ADH6: view
genes like me logo Genes that share phenotypes with ADH6: view

Animal Model Products

CRISPR Products

miRNA for ADH6 Gene

miRTarBase miRNAs that target ADH6

Inhibitory RNA Products

Clone Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for ADH6 Gene

Localization for ADH6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for ADH6 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for ADH6 gene
Compartment Confidence
extracellular 5
cytosol 5
mitochondrion 2
plasma membrane 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for ADH6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005829 cytosol TAS --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with ADH6: view

Pathways & Interactions for ADH6 Gene

genes like me logo Genes that share pathways with ADH6: view

Gene Ontology (GO) - Biological Process for ADH6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006069 ethanol oxidation TAS --
GO:0045471 response to ethanol IDA 1755855
GO:0055114 oxidation-reduction process IEA --
genes like me logo Genes that share ontologies with ADH6: view

No data available for SIGNOR curated interactions for ADH6 Gene

Drugs & Compounds for ADH6 Gene

(12) Drugs for ADH6 Gene - From: DrugBank, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Ethanol Approved Pharma Enzyme 2137
Abacavir Approved, Investigational Pharma Enzyme, substrate 214
Chloral hydrate Approved, Illicit, Vet_approved Pharma 16
Glycerol Approved, Experimental Pharma 238
Isopropyl alcohol Approved Pharma 0

(21) Additional Compounds for ADH6 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
1-Butanol
  • 1-Butanol
  • 1-Butyl alcohol
  • Butanol
  • Butyl alcohol
  • Butyl hydroxide
71-36-3
1-Hexanol
  • 1-Hexanol
  • 1-Hexyl alcohol
  • 1-Hydroxyhexane
  • Alcohol C-6
  • Alcohol(C6)
111-27-3
1-Pentanol
  • 1-Pentanol
  • 1-Pentol
  • 1-Pentyl alcohol
  • Alcool amylique
  • Alcool amylique (french)
71-41-0
2,2,2-Trichloroethanol
  • (Hydroxymethyl)trichloromethane
  • 2, 2,2-Trichloroethanol
  • 2,2,2-Trichloro-1-ethanol
  • 2,2,2-Trichloro-Ethanol
  • 2,2,2-Trichloroethanol
115-20-8
2-Phenyl-1,3-propanediol monocarbamate
genes like me logo Genes that share compounds with ADH6: view

Transcripts for ADH6 Gene

Unigene Clusters for ADH6 Gene

Alcohol dehydrogenase 6 (class V):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for ADH6 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7 ^ 8a · 8b ^ 9a · 9b
SP1: - -
SP2: - -
SP3: - - -
SP4:

Relevant External Links for ADH6 Gene

GeneLoc Exon Structure for
ADH6
ECgene alternative splicing isoforms for
ADH6

Expression for ADH6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for ADH6 Gene

mRNA differential expression in normal tissues according to GTEx for ADH6 Gene

This gene is overexpressed in Liver (x41.0).

Protein differential expression in normal tissues from HIPED for ADH6 Gene

This gene is overexpressed in Liver (36.4) and Liver, secretome (18.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for ADH6 Gene



NURSA nuclear receptor signaling pathways regulating expression of ADH6 Gene:

ADH6

SOURCE GeneReport for Unigene cluster for ADH6 Gene:

Hs.586161

mRNA Expression by UniProt/SwissProt for ADH6 Gene:

P28332-ADH6_HUMAN
Tissue specificity: Stomach and liver.

Evidence on tissue expression from TISSUES for ADH6 Gene

  • Liver(4.8)
  • Intestine(4.2)
  • Kidney(2)
genes like me logo Genes that share expression patterns with ADH6: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for ADH6 Gene

Orthologs for ADH6 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for ADH6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ADH6 34 35
  • 99.82 (n)
cow
(Bos Taurus)
Mammalia ADH6 34 35
  • 84.58 (n)
rat
(Rattus norvegicus)
Mammalia Adh6 34
  • 74.4 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia ADH6 35
  • 62 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia ADH6 35
  • 59 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ADH6 35
  • 57 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Adh6a 35
  • 55 (a)
OneToMany
chicken
(Gallus gallus)
Aves ADH6 34 35
  • 64.71 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 61 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100487939 34
  • 62.47 (n)
zebrafish
(Danio rerio)
Actinopterygii zgc:77938 35
  • 53 (a)
ManyToMany
adh8a 35
  • 52 (a)
ManyToMany
zgc:63568 35
  • 51 (a)
ManyToMany
adh8b 35
  • 49 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta Fdh 35
  • 50 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea H24K24.3 35
  • 47 (a)
ManyToMany
Y50D4C.2 35
  • 30 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SFA1 35
  • 42 (a)
OneToMany
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.80 34
sea squirt
(Ciona savignyi)
Ascidiacea CSA.1497 35
  • 51 (a)
OneToMany
Species where no ortholog for ADH6 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for ADH6 Gene

ENSEMBL:
Gene Tree for ADH6 (if available)
TreeFam:
Gene Tree for ADH6 (if available)

Paralogs for ADH6 Gene

Paralogs for ADH6 Gene

(7) SIMAP similar genes for ADH6 Gene using alignment to 7 proteins:

Pseudogenes.org Pseudogenes for ADH6 Gene

genes like me logo Genes that share paralogs with ADH6: view

Variants for ADH6 Gene

Sequence variations from dbSNP and Humsavar for ADH6 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1000086542 -- 99,212,442(+) GTAAT(G/T)AACAT intron-variant
rs10002894 -- 99,220,083(+) TTCAT(A/G/T)AGAGT intron-variant, upstream-variant-2KB
rs1000518001 -- 99,206,561(+) AACTG(A/G)ATTAT intron-variant
rs1000690673 -- 99,214,448(+) TGTTT(C/G)CTATT intron-variant
rs10008281 -- 99,221,145(+) TTCAG(A/C/T)GCTCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for ADH6 Gene

Variant ID Type Subtype PubMed ID
dgv5345n100 CNV gain 25217958
nsv1002574 CNV loss 25217958
nsv1002927 CNV gain 25217958
nsv1128084 CNV deletion 24896259

Variation tolerance for ADH6 Gene

Residual Variation Intolerance Score: 61% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.72; 32.71% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for ADH6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ADH6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for ADH6 Gene

Disorders for ADH6 Gene

MalaCards: The human disease database

(2) MalaCards diseases for ADH6 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
fetal alcohol spectrum disorder
  • fetal alcohol syndrome
alcohol dependence
  • alcohol dependence, protection against
- elite association - COSMIC cancer census association via MalaCards
Search ADH6 in MalaCards View complete list of genes associated with diseases

Relevant External Links for ADH6

Genetic Association Database (GAD)
ADH6
Human Genome Epidemiology (HuGE) Navigator
ADH6
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ADH6
genes like me logo Genes that share disorders with ADH6: view

No data available for UniProtKB/Swiss-Prot and Genatlas for ADH6 Gene

Publications for ADH6 Gene

  1. A human alcohol dehydrogenase gene (ADH6) encoding an additional class of isozyme. (PMID: 1881901) Yasunami M. … Yoshida A. (Proc. Natl. Acad. Sci. U.S.A. 1991) 2 3 4 22 64
  2. Diplotype trend regression analysis of the ADH gene cluster and the ALDH2 gene: multiple significant associations with alcohol dependence. (PMID: 16685648) Luo X. … Gelernter J. (Am. J. Hum. Genet. 2006) 3 22 46 64
  3. MicroRNA-related genetic variations as predictors for risk of second primary tumor and/or recurrence in patients with early-stage head and neck cancer. (PMID: 20819778) Zhang X. … Wu X. (Carcinogenesis 2010) 3 46 64
  4. Association study between single-nucleotide polymorphisms in 199 drug-related genes and commonly measured quantitative traits of 752 healthy Japanese subjects. (PMID: 19343046) Saito A. … Kamatani N. (J. Hum. Genet. 2009) 3 46 64
  5. Genetical genomic determinants of alcohol consumption in rats and humans. (PMID: 19874574) Tabakoff B. … Hoffman P.L. (BMC Biol. 2009) 3 46 64

Products for ADH6 Gene

Sources for ADH6 Gene

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