Aliases for CST9L Gene
Aliases for CST9L Gene
External Ids for CST9L Gene
- HGNC: 16233
- Entrez Gene: 128821
- Ensembl: ENSG00000101435
- OMIM: 616536
- UniProtKB: Q9H4G1
Previous GeneCards Identifiers for CST9L Gene
- GC20M023533
- GC20M023493
- GC20M023540
- GC20M023506
Summaries for CST9L Gene
-
The cystatin superfamily encompasses proteins that contain multiple cystatin-like sequences. Some of the members are active cysteine protease inhibitors, while others have lost or perhaps never acquired this inhibitory activity. There are three inhibitory families in the superfamily, including the type 1 cystatins (stefins), type 2 cystatins and the kininogens. The type 2 cystatin proteins are a class of cysteine proteinase inhibitors found in a variety of human fluids and secretions. The cystatin locus on chromosome 20 contains the majority of the type 2 cystatin genes and pseudogenes. This gene is located in the cystatin locus and encodes a protein similar to mouse cystatin 9. Based on its testis-specific expression, it is likely to have a role in tissue reorganization during early testis development. [provided by RefSeq, Jul 2008]
GeneCards Summary for CST9L Gene
CST9L (Cystatin 9 Like) is a Protein Coding gene. GO annotations related to this gene include cysteine-type endopeptidase inhibitor activity. An important paralog of this gene is CST9.
No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CST9L Gene
Genomics for CST9L Gene
Regulatory Elements for CST9L Gene
Enhancers for CST9L Gene
| GeneHancer Identifier | Enhancer Score | Enhancer Sources | Gene-Enhancer Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites within enhancer | Gene Targets for Enhancer |
|---|---|---|---|---|---|---|---|---|
| GH20G023179 | 1.4 | FANTOM5 Ensembl ENCODE | 54.8 | +388.3 | 388252 | 1.4 | PKNOX1 ATF1 NFRKB ETV1 ZIC2 EGR1 EED NR2F6 CREM ZNF639 | CST8 CST9L CSTL1 CD93 ENSG00000234832 NXT1 ENSG00000230387 ENSG00000275179 |
- Elite enhancer and/or Elite enhancer-gene association
Download GeneHancer data dump
Enhancers around CST9L on UCSC Golden Path with GeneCards custom track
- Transcription factor binding sites by QIAGEN in the CST9L gene promoter:
Regulatory Element Products
Genomic Location for CST9L Gene
- Chromosome:
- 20
- Start:
- 23,564,732 bp from pter
- End:
- 23,568,749 bp from pter
- Size:
- 4,018 bases
- Orientation:
- Minus strand
Genomic View for CST9L Gene
Genes around CST9L on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 20p11.21 by Ensembl
- 20p11.21 by Entrez Gene
- 20p11.21 by HGNC
CST9L Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for CST9L Gene
Proteins for CST9L Gene
-
Protein details for CST9L Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q9H4G1-CST9L_HUMAN
- Recommended name:
- Cystatin-9-like
- Protein Accession:
- Q9H4G1
- B2R5A1
Protein attributes for CST9L Gene
- Size:
- 147 amino acids
- Molecular mass:
- 17276 Da
- Quaternary structure:
- No Data Available
- Miscellaneous:
-
- Lacks critical consensus sites important for cysteine protease inhibition.
Protein Expression for CST9L Gene
Post-translational modifications for CST9L Gene
Other Protein References for CST9L Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
-
Custom Antibody ServicesOriGene Antibodies for CST9L
-
Abcam antibodies for CST9L
- Invitrogen Antibodies for CST9L
- antibodies-online Antibodies for CST9L: See all 13
- Search GeneTex for Antibodies for CST9L
Protein Products
-
OriGene Purified Proteins for CST9L
- Search Origene for MassSpec and Protein Over-expression Lysates for CST9L
- Origene Custom Protein Services for CST9L
- Sino Biological Recombinant Proteins for CST9L
- Sino Biological Cell Lysates for CST9L
- antibodies-online Proteins for CST9L: See all 4
- Search antibodies-online for peptides
- Search GeneTex for Proteins for CST9L
-
Abcam proteins for CST9L
Assay Products
- antibodies-online Kits for CST9L: See all 3
No data available for DME Specific Peptides for CST9L Gene
Domains & Families for CST9L Gene
Gene Families for CST9L Gene
- HGNC:
Protein Domains for CST9L Gene
- InterPro:
- Blocks:
- ProtoNet:
Suggested Antigen Peptide Sequences for CST9L Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
Q9H4G1- Family:
-
- Belongs to the cystatin family.
Function for CST9L Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0004869 | cysteine-type endopeptidase inhibitor activity | IEA | -- |
| GO:0005515 | protein binding | IPI | 25416956 |
| GO:0030414 | peptidase inhibitor activity | IEA | -- |
Phenotypes for CST9L Gene
- MGI mutant phenotypes for CST9L:
- inferred from 3 alleles
- GenomeRNAi human phenotypes for CST9L:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for CST9L
-
-
ViGene Biosciences lentiviral particle packaged cDNA for CST9L gene
-
ViGene Biosciences ready-to-package AAV shRNAs for CST9L gene
- Search ViGene Biosciences for CST9L
CRISPR Products
-
OriGene CRISPR knockouts for CST9L
-
Santa Cruz Biotechnology (SCBT) CRISPR for CST9L
- GenScript: Design CRISPR guide RNA sequences for CST9L
miRNA for CST9L Gene
- miRTarBase miRNAs that target CST9L
miRNA Products
- Search ViGene Biosciences for CST9L
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for CST9L
- Browse OriGene Inhibitory RNA Products For CST9L
-
ViGene Biosciences ready-to-package AAV shRNAs for CST9L gene
Clone Products
-
OriGene ORF clones in human for CST9L
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- VectorBuilder custom plasmid, inducible vectors for CST9L
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CST9L
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Cell Line Products
-
Horizon Cell Lines for CST9L
-
ViGene Biosciences adenoviral particle packaged cDNA for CST9L gene
-
ViGene Biosciences lentiviral particle packaged cDNA for CST9L gene
-
ViGene Biosciences ready-to-package AAV shRNAs for CST9L gene
Flow Cytometry Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CST9L Gene
Localization for CST9L Gene
Subcellular locations from UniProtKB/Swiss-Prot for CST9L Gene
- Secreted.
| Compartment | Confidence |
|---|---|
| extracellular | 5 |
| golgi apparatus | 1 |
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005576 | extracellular region | IEA | -- |
Pathways & Interactions for CST9L Gene
No Data Available
Interacting Proteins for CST9L Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0010466 | negative regulation of peptidase activity | IEA | -- |
| GO:0010951 | negative regulation of endopeptidase activity | IEA | -- |
No data available for Pathways by source and SIGNOR curated interactions for CST9L Gene
Transcripts for CST9L Gene
mRNA/cDNA for CST9L Gene
- (1) REFSEQ mRNAs :
- (3) Additional mRNA sequences :
- (32) Selected AceView cDNA sequences:
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
CRISPR Products
-
OriGene CRISPR knockouts for CST9L
-
Santa Cruz Biotechnology (SCBT) CRISPR for CST9L
- GenScript: Design CRISPR guide RNA sequences for CST9L
miRNA Products
- Search ViGene Biosciences for CST9L
Inhibitory RNA Products
- Origene shRNA, siRNA, and RNAi products in human, mouse, rat for CST9L
- Browse OriGene Inhibitory RNA Products For CST9L
-
ViGene Biosciences ready-to-package AAV shRNAs for CST9L gene
Clone Products
-
OriGene ORF clones in human for CST9L
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Sino Biological Human cDNA Clone for CST9L
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- VectorBuilder custom plasmid, inducible vectors for CST9L
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CST9L
-
VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Flow Cytometry Products
Expression for CST9L Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Testis (Reproductive System)
- Pre-Sertoli Cells Testis Cord
- Testicular Interstitial Cells Testis Interstitium
- Mature Sertoli Cells Seminiferous Tubules
- XY Germ Cells Testis Cord
-
Gonad
- XY Germ Cells Testis Cord
mRNA differential expression in normal tissues according to GTEx for CST9L Gene
This gene is overexpressed in Testis (x52.6).
This gene is overexpressed in Ovary (69.0).
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for CST9L Gene
- Elite partner
NURSA nuclear receptor signaling pathways regulating expression of CST9L Gene:
CST9LSOURCE GeneReport for Unigene cluster for CST9L Gene:
Hs.121554mRNA Expression by UniProt/SwissProt for CST9L Gene:
Q9H4G1-CST9L_HUMAN
Tissue specificity:
Specifically espressed in testis.
Evidence on tissue expression from TISSUES for CST9L Gene
- Nervous system(4)
Primer Products
-
OriGene qPCR primer pairs and template standards for CST9L
-
OriGene qPCR primer pairs for CST9L
No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for CST9L Gene
Orthologs for CST9L Gene
This gene was present in the common ancestor of mammals.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| chimpanzee (Pan troglodytes) |
Mammalia | LOC740314 34 |
|
||
| CST9L 35 |
|
OneToOne | |||
| cow (Bos Taurus) |
Mammalia | LOC505033 34 |
|
||
| -- 35 |
|
OneToMany | |||
| -- 35 |
|
OneToMany | |||
| dog (Canis familiaris) |
Mammalia | CST9 34 |
|
||
| CST9L 35 |
|
OneToOne | |||
| rat (Rattus norvegicus) |
Mammalia | Cst9l 34 |
|
||
| mouse (Mus musculus) |
Mammalia | Cst9 34 16 |
|
||
| 9230104L09Rik 35 |
|
ManyToMany |
- Species where no ortholog for CST9L was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- fruit fly (Drosophila melanogaster)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- oppossum (Monodelphis domestica)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- platypus (Ornithorhynchus anatinus)
- rainbow trout (Oncorhynchus mykiss)
- rice (Oryza sativa)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea squirt (Ciona intestinalis)
- sea squirt (Ciona savignyi)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- thale cress (Arabidopsis thaliana)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
- worm (Caenorhabditis elegans)
- zebrafish (Danio rerio)
Paralogs for CST9L Gene
(5) SIMAP similar genes for CST9L Gene using alignment to 1 proteins:
Pseudogenes.org Pseudogenes for CST9L Gene
Variants for CST9L Gene
| SNP ID | Clin | Chr 20 pos | Sequence Context | AA Info | Type |
|---|---|---|---|---|---|
| rs1000511328 | -- | 23,567,319(+) | CCTGG(C/T)CAACA | intron-variant | |
| rs1001276163 | -- | 23,567,827(+) | AAATT(A/T)TCTCT | intron-variant | |
| rs1001516711 | -- | 23,568,524(+) | CAGAC(C/G)CAGCC | utr-variant-5-prime | |
| rs1002403191 | -- | 23,564,763(+) | TCTAC(A/G)CTACA | utr-variant-3-prime | |
| rs1002529296 | -- | 23,569,826(+) | CACAG(A/G)AGACT | upstream-variant-2KB |
Residual Variation Intolerance Score:
80.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score:
3.10;
50.99% of all genes are more intolerant (likely to be disease-causing)
Relevant External Links for CST9L Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- CST9L
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CST9L Gene
Disorders for CST9L Gene
Relevant External Links for CST9L
No disorders were found for CST9L Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for CST9L Gene
Publications for CST9L Gene
- Evolution and human tissue expression of the Cres/Testatin subgroup genes, a reproductive tissue specific subgroup of the type 2 cystatins. (PMID: 20565543) Frygelius J. … TAPhAPnen V. (Evol. Dev. 2010) 2 3 4 64
- Isolation of the human testatin gene and analysis in patients with abnormal gonadal development. (PMID: 11756564) Eriksson A. … Nordqvist K. (Mol. Hum. Reprod. 2002) 3 4 22 64
- A genome-wide association for kidney function and endocrine-related traits in the NHLBI's Framingham Heart Study. (PMID: 17903292) Hwang S.J. … Fox C.S. (BMC Med. Genet. 2007) 3 46 64
- Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PMID: 15340161) Zhang Z. … Henzel W.J. (Protein Sci. 2004) 3 4 64
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
Products for CST9L Gene
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- Custom Antibody ServicesOriGene Antibodies for CST9L
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- OriGene Purified Proteins for CST9L
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- OriGene qPCR primer pairs and template standards for CST9L
- OriGene qPCR primer pairs for CST9L
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- GenScript: Next-day shipping cDNA ORF clone for CST9L in any vector
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- GenScript: Design CRISPR guide RNA sequences for CST9L
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- Novus Biologicals proteins and lysates for CST9L
- Novus Biologicals
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- Abcam antibodies for CST9L
- Abcam proteins for CST9L
- Search for Assays for CST9L at Abcam
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- antibodies-online Antibodies for CST9L: See all 13
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- ViGene Biosciences adenoviral particle packaged cDNA for CST9L gene
- ViGene Biosciences lentiviral particle packaged cDNA for CST9L gene
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- Search ViGene Biosciences for CST9L
- Horizon Cell Lines for CST9L
- Cyagen custom Knockout/knockin (KOKI) mouse models for CST9L
- VectorBuilder custom plasmid, inducible vectors for CST9L
- VectorBuilder custom lentivirus, adenovirus, AAV vector/virus packaging for CST9L
- VectorBuilder Other custom vectors
- Mammalian expression: PiggyBac
- Mammalian Tet-on expression: plasmid
- Mammalian conditional (Cre-Lox): plasmid and PiggyBac
- Mammalian shRNA knockdown: lentiviral, adenoviral, AAV, and PiggyBac
- CRISPR: plasmid gRNA, lentiviral gRNA, and donor plasmid
- Bacterial expression: pET, pBAD, and pCS
- Yeast expression
Sources for CST9L Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) RNAdb
- (29) ASD
- (30) ECgene
- (31) GeneAnnot
- (32) CGAP SAGE
- (33) SOURCE
- (34) HomoloGene
- (35) PanEnsembl
- (36) euGenes
- (37) SGD
- (38) FlyBase
- (39) WormBase
- (40) Pseudogene
- (41) DGV
- (42) dbSNP
- (43) GenAtlas
- (44) GeneTests
- (45) HGMD
- (46) GAD
- (47) LSDB
- (48) BGMUT
- (49) HuGE
- (50) eBioscience
- (51) Atlas
- (52) Cell Signaling Technology
- (53) GenBank
- (54) H-invDB
- (55) HORDE
- (56) HUGE
- (57) IMGT
- (58) Leiden
- (59) MILLIPORE
- (60) miRBase
- (61) DME
- (62) NCBI
- (63) OriGene
- (64) PubMed
- (65) R&D Systems
- (66) TGDB
- (67) Tocris
- (68) Abcam
- (69) Novus
- (70) ProSpec
- (71) Sino Biological
- (72) GenScript
- (73) Qiagen
- (74) Cloud-Clone Corp.
- (75) Enzo Life Sciences
- (76) OCA
- (77) Proteopedia
- (78) MOPED
- (79) SPIRE
- (80) neXtProt
- (81) Reactome
- (82) GeneGo (Thomson Reuters)
- (83) fRNAdb
- (84) DISEASES
- (85) SIMAP
- (86) GenomeRNAi
- (87) LifeMap
- (88) miRTarBase
- (89) MalaCards
- (90) Invitrogen
- (91) BitterDB
- (92) Vector BioLabs
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- (95) BioSystems
- (96) MaxQB
- (97) IUPHAR
- (98) BioGPS
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- (100) COMPARTMENTS
- (101) HOMER
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- (103) ApexBio
- (104) Addgene
- (105) antibodies-online
- (106) CYP
- (107) NONCODE
- (108) SwitchGear Genomics
- (109) TreeFam
- (110) PathCards
- (111) GeneReviews
- (112) GeneTex
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- (146) Cyagen
- (147) VectorBuilder
- (148) SNPedia
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- (153) dbSUPER
- (154) TISSUES
- (155) Gene ORGANizer