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Aliases for SLC38A10 Gene

Aliases for SLC38A10 Gene

  • Solute Carrier Family 38 Member 10 2 3 4 5
  • Putative Sodium-Coupled Neutral Amino Acid Transporter 10 3
  • Solute Carrier Family 38, Member 10 2
  • PP1744 3

External Ids for SLC38A10 Gene

Previous GeneCards Identifiers for SLC38A10 Gene

  • GC17M076834
  • GC17M079218
  • GC17M074654

Summaries for SLC38A10 Gene

GeneCards Summary for SLC38A10 Gene

SLC38A10 (Solute Carrier Family 38 Member 10) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include amino acid transmembrane transporter activity. An important paralog of this gene is SLC38A2.

UniProtKB/Swiss-Prot for SLC38A10 Gene

  • Putative sodium-dependent amino acid/proton antiporter.

Gene Wiki entry for SLC38A10 Gene

Additional gene information for SLC38A10 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC38A10 Gene

Genomics for SLC38A10 Gene

GeneHancer (GH) Regulatory Elements for SLC38A10 Gene

Promoters and enhancers for SLC38A10 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I081294 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 588.5 +0.1 116 2.7 HDGF CLOCK SMAD1 FOXA2 ARNT ZFP64 ARID4B SIN3A YY1 POLR2B SLC38A10 NDUFAF8 CSNK1D FAAP100 TEPSIN ENSG00000260563 ENSG00000265678 HGS GC17P081274
GH17I081284 Promoter/Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 33.6 +8.8 8783 3.8 ATF1 YY1 ZNF766 ZNF207 ZNF143 ATF7 ZNF592 MBD2 MEF2D GMEB1 SLC38A10 TMEM105 CEP131 LOC100294362 CCDC57 ENDOV LINC00482 GPS1 ENSG00000265678 ARL16
GH17I082281 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 19.5 -987.2 -987241 2.7 HDGF CLOCK ARNT ZNF493 YBX1 GLI4 ZBTB7B ZNF48 GLIS2 ELK1 TBCD FAAP100 OGFOD3 ENSG00000260563 ENSG00000262877 NARF-IT1 ENSG00000262652 ENSG00000265678 ARL2BPP9 GPS1
GH17I081384 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.5 -100.6 -100557 22.4 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF263 BAHCC1 ENSG00000279692 ENSG00000262877 CEP131 GPS1 HGS ENSG00000260011 FAAP100 ENSG00000260369 ENSG00000265678
GH17I081308 Enhancer 1.4 Ensembl ENCODE dbSUPER 20.6 -14.4 -14377 3.8 PKNOX1 CLOCK ARNT ARID4B SIN3A YY1 SLC30A9 POLR2B SP5 MXD4 LINC00482 SLC38A10 TMEM105 ENSG00000260563 TEPSIN FAAP100 CSNK1D ENSG00000265678 DUS1L RFNG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SLC38A10 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SLC38A10 gene promoter:

Genomic Locations for SLC38A10 Gene

Genomic Locations for SLC38A10 Gene
chr17:81,244,811-81,295,547
(GRCh38/hg38)
Size:
50,737 bases
Orientation:
Minus strand
chr17:79,218,799-79,269,347
(GRCh37/hg19)

Genomic View for SLC38A10 Gene

Genes around SLC38A10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SLC38A10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SLC38A10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC38A10 Gene

Proteins for SLC38A10 Gene

  • Protein details for SLC38A10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9HBR0-S38AA_HUMAN
    Recommended name:
    Putative sodium-coupled neutral amino acid transporter 10
    Protein Accession:
    Q9HBR0
    Secondary Accessions:
    • Q6ZRC5
    • Q8NA99
    • Q96C66

    Protein attributes for SLC38A10 Gene

    Size:
    1119 amino acids
    Molecular mass:
    119762 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAG17235.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAC04027.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for SLC38A10 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC38A10 Gene

Post-translational modifications for SLC38A10 Gene

  • Glycosylation at posLast=429429, isoforms=2, 3524, posLast=795795, isoforms=802, isoforms=806, isoforms=886, isoforms=902, isoforms=921, posLast=997997, and posLast=11061106

No data available for DME Specific Peptides for SLC38A10 Gene

Domains & Families for SLC38A10 Gene

Gene Families for SLC38A10 Gene

HGNC:
IUPHAR :
Human Protein Atlas (HPA):
  • Plasma proteins
  • Predicted intracellular proteins
  • Predicted membrane proteins
  • Transporters

Protein Domains for SLC38A10 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SLC38A10 Gene

Graphical View of Domain Structure for InterPro Entry

Q9HBR0

UniProtKB/Swiss-Prot:

S38AA_HUMAN :
  • Belongs to the amino acid/polyamine transporter 2 family.
Family:
  • Belongs to the amino acid/polyamine transporter 2 family.
genes like me logo Genes that share domains with SLC38A10: view

Function for SLC38A10 Gene

Molecular function for SLC38A10 Gene

UniProtKB/Swiss-Prot Function:
Putative sodium-dependent amino acid/proton antiporter.

Phenotypes From GWAS Catalog for SLC38A10 Gene

Gene Ontology (GO) - Molecular Function for SLC38A10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0015171 amino acid transmembrane transporter activity IBA --
genes like me logo Genes that share ontologies with SLC38A10: view
genes like me logo Genes that share phenotypes with SLC38A10: view

Animal Models for SLC38A10 Gene

MGI Knock Outs for SLC38A10:

Animal Model Products

miRNA for SLC38A10 Gene

miRTarBase miRNAs that target SLC38A10

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SLC38A10 Gene

Localization for SLC38A10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC38A10 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SLC38A10 gene
Compartment Confidence
golgi apparatus 5
plasma membrane 3
nucleus 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (4)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for SLC38A10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005794 Golgi apparatus IDA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SLC38A10: view

Pathways & Interactions for SLC38A10 Gene

SuperPathways for SLC38A10 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SLC38A10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003333 amino acid transmembrane transport IBA --
GO:0006810 transport IEA --
GO:0006811 ion transport IEA --
GO:0006814 sodium ion transport IEA --
GO:0006865 amino acid transport IEA --
genes like me logo Genes that share ontologies with SLC38A10: view

No data available for Pathways by source and SIGNOR curated interactions for SLC38A10 Gene

Drugs & Compounds for SLC38A10 Gene

(1) Additional Compounds for SLC38A10 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
sodium
  • Sodium
  • Sodium ion
7440-23-5
genes like me logo Genes that share compounds with SLC38A10: view

Transcripts for SLC38A10 Gene

Unigene Clusters for SLC38A10 Gene

Solute carrier family 38, member 10:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SLC38A10 Gene

No ASD Table

Relevant External Links for SLC38A10 Gene

GeneLoc Exon Structure for
SLC38A10
ECgene alternative splicing isoforms for
SLC38A10

Expression for SLC38A10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SLC38A10 Gene

Protein differential expression in normal tissues from HIPED for SLC38A10 Gene

This gene is overexpressed in Adrenal (34.3), Pancreas (8.2), and Peripheral blood mononuclear cells (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SLC38A10 Gene



NURSA nuclear receptor signaling pathways regulating expression of SLC38A10 Gene:

SLC38A10

SOURCE GeneReport for Unigene cluster for SLC38A10 Gene:

Hs.352240

Evidence on tissue expression from TISSUES for SLC38A10 Gene

  • Liver(4.3)
  • Muscle(4.2)
  • Skin(2)
genes like me logo Genes that share expression patterns with SLC38A10: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SLC38A10 Gene

Orthologs for SLC38A10 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SLC38A10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SLC38A10 33
  • 97.62 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia SLC38A10 34
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SLC38A10 33 34
  • 79.58 (n)
dog
(Canis familiaris)
Mammalia SLC38A10 33 34
  • 78.49 (n)
mouse
(Mus musculus)
Mammalia Slc38a10 33 16 34
  • 76.66 (n)
rat
(Rattus norvegicus)
Mammalia Slc38a10 33
  • 76.23 (n)
oppossum
(Monodelphis domestica)
Mammalia SLC38A10 34
  • 59 (a)
OneToOne
chicken
(Gallus gallus)
Aves SLC38A10 33 34
  • 64.94 (n)
lizard
(Anolis carolinensis)
Reptilia SLC38A10 34
  • 52 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia slc38a10 33
  • 66.92 (n)
African clawed frog
(Xenopus laevis)
Amphibia MGC69139 33
zebrafish
(Danio rerio)
Actinopterygii slc38a10 34
  • 44 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG30394 34
  • 28 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea Y51F10.4 33 34
  • 45.55 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes AVT2 34
  • 20 (a)
OneToMany
AVT5 36
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 48 (a)
OneToOne
Species where no ortholog for SLC38A10 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SLC38A10 Gene

ENSEMBL:
Gene Tree for SLC38A10 (if available)
TreeFam:
Gene Tree for SLC38A10 (if available)

Paralogs for SLC38A10 Gene

Paralogs for SLC38A10 Gene

genes like me logo Genes that share paralogs with SLC38A10: view

Variants for SLC38A10 Gene

Sequence variations from dbSNP and Humsavar for SLC38A10 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000002655 -- 81,296,681(-) A/G upstream_transcript_variant
rs1000021319 -- 81,264,625(-) T/C intron_variant
rs1000039174 -- 81,253,798(-) A/G intron_variant
rs1000100224 -- 81,264,812(-) T/C intron_variant
rs1000138603 -- 81,246,803(-) C/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SLC38A10 Gene

Variant ID Type Subtype PubMed ID
dgv46n68 CNV loss 17160897
esv26223 CNV gain+loss 19812545
esv2716444 CNV deletion 23290073
esv2716445 CNV deletion 23290073
esv2758707 CNV gain 17122850
esv3357817 CNV duplication 20981092
esv3554878 CNV deletion 23714750
esv3641394 CNV loss 21293372
esv3893051 CNV gain 25118596
esv987875 CNV insertion 20482838
esv997494 CNV insertion 20482838
nsv1064123 CNV gain 25217958
nsv1142232 CNV tandem duplication 24896259
nsv1160499 CNV deletion 26073780
nsv2161 CNV insertion 18451855
nsv428351 CNV gain 18775914
nsv457971 CNV loss 19166990
nsv470619 CNV loss 18288195
nsv509677 CNV insertion 20534489
nsv576172 CNV loss 21841781
nsv828128 CNV loss 20364138
nsv952389 CNV deletion 24416366

Variation tolerance for SLC38A10 Gene

Residual Variation Intolerance Score: 53.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 20.46; 99.10% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for SLC38A10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SLC38A10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SLC38A10 Gene

Disorders for SLC38A10 Gene

Additional Disease Information for SLC38A10

No disorders were found for SLC38A10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SLC38A10 Gene

Publications for SLC38A10 Gene

  1. Joint influence of small-effect genetic variants on human longevity. (PMID: 20834067) Yashin AI … Ukraintseva SV (Aging 2010) 3 44 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin EL … Gygi SP (Cell 2015) 3 58
  5. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3 58

Products for SLC38A10 Gene

Sources for SLC38A10 Gene

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