Aliases for CLIC2 Gene
Aliases for CLIC2 Gene
External Ids for CLIC2 Gene
- HGNC: 2063
- Entrez Gene: 1193
- Ensembl: ENSG00000155962
- OMIM: 300138
- UniProtKB: O15247
Previous GeneCards Identifiers for CLIC2 Gene
- GC0XP148554
- GC0XP150871
- GC0XM152023
- GC0XM152928
- GC0XM154070
- GC0XM154158
- GC0XM154505
- GC0XM143049
Summaries for CLIC2 Gene
-
This gene encodes a chloride intracellular channel protein. Chloride channels are a diverse group of proteins that regulate fundamental cellular processes including stabilization of cell membrane potential, transepithelial transport, maintenance of intracellular pH, and regulation of cell volume. This protein plays a role in inhibiting the function of ryanodine receptor 2. A mutation in this gene is the cause of an X-linked form of cognitive disability. [provided by RefSeq, Jul 2017]
GeneCards Summary for CLIC2 Gene
CLIC2 (Chloride Intracellular Channel 2) is a Protein Coding gene. Diseases associated with CLIC2 include Mental Retardation, X-Linked, Syndromic 32 and Chromosome Xq28 Duplication Syndrome. Among its related pathways are Cardiac conduction and Activation of cAMP-Dependent PKA. Gene Ontology (GO) annotations related to this gene include chloride channel activity and glutathione transferase activity. An important paralog of this gene is CLIC6.
UniProtKB/Swiss-Prot for CLIC2 Gene
-
Can insert into membranes and form chloride ion channels. Channel activity depends on the pH. Membrane insertion seems to be redox-regulated and may occur only under oxydizing conditions. Modulates the activity of RYR2 and inhibits calcium influx.
Additional gene information for CLIC2 Gene
- Monarch Initiative
- Search for CLIC2 at DataMed
- Search for CLIC2 at HumanCyc
No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CLIC2 Gene
Genomics for CLIC2 Gene
GeneHancer (GH) Regulatory Elements for CLIC2 Gene
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH0XI155332 | Promoter/Enhancer | 1.9 | EPDnew Ensembl ENCODE | 550.8 | +0.5 | 509 | 3.1 | ATF1 ARNT YBX1 TCF12 POLR2B ZNF766 E2F8 ATF7 NCOA1 ZNF184 | CLIC2 TMLHE ENSG00000230491 LOC101927830 | |
GH0XI154723 | Enhancer | 1.6 | FANTOM5 Ensembl ENCODE dbSUPER | 9.8 | +603.3 | 603256 | 16 | FOXA2 ZFP64 IRF4 YY1 ZNF213 FOS RUNX3 RXRA JUNB ZC3H11A | DKC1 SNORA70 HCFC1 SNORA56 F8A1 EMD GAB3 PLXNA3 F8A2 SLC10A3 |
Regulatory Element Products
Genomic Locations for CLIC2 Gene
- chrX:155,276,207-155,334,681
- (GRCh38/hg38)
- Size:
- 58,475 bases
- Orientation:
- Minus strand
- chrX:154,505,500-154,563,986
- (GRCh37/hg19)
Genomic View for CLIC2 Gene
- Cytogenetic band:
-
- Xq28 by Ensembl
- Xq28 by Entrez Gene
- Xq28 by HGNC


RefSeq DNA sequence for CLIC2 Gene
Proteins for CLIC2 Gene
-
Protein details for CLIC2 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- O15247-CLIC2_HUMAN
- Recommended name:
- Chloride intracellular channel protein 2
- Protein Accession:
- O15247
- A8K9S0
- O15174
- Q5JT80
- Q8TCE3
Protein attributes for CLIC2 Gene
- Size:
- 247 amino acids
- Molecular mass:
- 28356 Da
- Quaternary structure:
-
- Monomer. Interacts with TRAPPC2 and RYR2.
- SequenceCaution:
-
- Sequence=CAA73228.1; Type=Frameshift; Positions=244; Evidence={ECO:0000305};
Protein Expression for CLIC2 Gene
Post-translational modifications for CLIC2 Gene
Other Protein References for CLIC2 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
- Novus Biologicals Antibodies for CLIC2
-
Abcam antibodies for CLIC2
- Invitrogen Antibodies for CLIC2
- GeneTex CLIC2 antibody for CLIC2
Protein Products
-
OriGene Purified Proteins for CLIC2
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- Search GeneTex for Proteins for CLIC2
-
ProSci Proteins for CLIC2
-
Abcam proteins for CLIC2
Assay Products
No data available for DME Specific Peptides for CLIC2 Gene
Domains & Families for CLIC2 Gene
Gene Families for CLIC2 Gene
- HGNC:
- Human Protein Atlas (HPA):
-
- Disease related genes
- Potential drug targets
- Predicted intracellular proteins
- Transporters
Protein Domains for CLIC2 Gene
Suggested Antigen Peptide Sequences for CLIC2 Gene
- GenScript: Design optimal peptide antigens:
Graphical View of Domain Structure for InterPro Entry
O15247UniProtKB/Swiss-Prot:
CLIC2_HUMAN :- Members of this family may change from a globular, soluble state to a state where the N-terminal domain is inserted into the membrane and functions as chloride channel. A conformation change of the N-terminal domain is thought to expose hydrophobic surfaces that trigger membrane insertion.
- Belongs to the chloride channel CLIC family.
- Domain:
-
- Members of this family may change from a globular, soluble state to a state where the N-terminal domain is inserted into the membrane and functions as chloride channel. A conformation change of the N-terminal domain is thought to expose hydrophobic surfaces that trigger membrane insertion.
- Family:
-
- Belongs to the chloride channel CLIC family.
Function for CLIC2 Gene
Molecular function for CLIC2 Gene
- UniProtKB/Swiss-Prot Function:
- Can insert into membranes and form chloride ion channels. Channel activity depends on the pH. Membrane insertion seems to be redox-regulated and may occur only under oxydizing conditions. Modulates the activity of RYR2 and inhibits calcium influx.
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0004364 | NOT glutathione transferase activity | IDA | 15147738 |
GO:0004602 | glutathione peroxidase activity | IDA | 15147738 |
GO:0005244 | voltage-gated ion channel activity | IEA | -- |
GO:0005254 | chloride channel activity | IEA,IBA | -- |
GO:0005515 | protein binding | IPI | 12681486 |
Phenotypes for CLIC2 Gene
- GenomeRNAi human phenotypes for CLIC2:
-
- Increased viability
- Increased vaccinia virus (VACV) infection
- Mildly decreased CFP-tsO45G cell surface transport
- Decreased ionizing radiation sensitivity
- Decreased shRNA abundance (Z-score < -2)
- Dynamic nuclei (hole, folded or small irregular)
- Increased shRNA abundance (Z-score > 2)
- Strongly decreased CFP-tsO45G cell surface transport
- Negative genetic interaction between KRASG13D/+ and KRAS+/-
- Decreased shRNA abundance
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
-
ViGene Biosciences lentiviral particle packaged cDNA for CLIC2 gene
-
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CRISPR Products
-
OriGene CRISPR knockouts for CLIC2
- genomics-online: gRNA clones - Search results for 68 available CLIC2 gene related products
- Overview of 68 available CLIC2 gene related products
- Applied Biological Materials CRISPR for CLIC2
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for CLIC2
- GenScript: Design CRISPR guide RNA sequences for CLIC2
miRNA for CLIC2 Gene
- miRTarBase miRNAs that target CLIC2
miRNA Products
- Search ViGene Biosciences for CLIC2
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for CLIC2
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- Overview of 68 available CLIC2 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for CLIC2 gene
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Applied Biological Materials Clones for CLIC2
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Cell Line Products
-
Horizon Cell Lines for CLIC2
-
ViGene Biosciences adenoviral particle packaged cDNA for CLIC2 gene
-
ViGene Biosciences lentiviral particle packaged cDNA for CLIC2 gene
-
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No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Animal Models , Transcription Factor Targets and HOMER Transcription for CLIC2 Gene
Localization for CLIC2 Gene
Subcellular locations from UniProtKB/Swiss-Prot for CLIC2 Gene
- Cytoplasm. Membrane; Single-pass membrane protein. Note=Exists both as soluble cytoplasmic protein and as membrane protein with probably a single transmembrane domain.
- Plasma membrane (2)
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0005622 | intracellular | IDA | -- |
GO:0005634 | nucleus | TAS | 16130169 |
GO:0005737 | cytoplasm | TAS | 16130169 |
GO:0016020 | membrane | IEA | -- |
GO:0016021 | integral component of membrane | IEA | -- |
Pathways & Interactions for CLIC2 Gene
SuperPathway | Contained pathways | ||
---|---|---|---|
1 | Activation of cAMP-Dependent PKA |
.77
|
.56
|
2 | Cardiac conduction |
.39
|
|
3 | Ion channel transport | ||
4 | Neuropathic Pain-Signaling in Dorsal Horn Neurons | ||
5 | Hepatic ABC Transporters |
Pathways by source for CLIC2 Gene
6 Reactome pathways for CLIC2 Gene
5 Qiagen pathways for CLIC2 Gene
Interacting Proteins for CLIC2 Gene
GO ID | Qualified GO term | Evidence | PubMed IDs |
---|---|---|---|
GO:0006749 | NOT glutathione metabolic process | IBA | -- |
GO:0006810 | transport | TAS | 9339381 |
GO:0006811 | ion transport | IEA | -- |
GO:0006821 | chloride transport | IEA | -- |
GO:0007165 | signal transduction | TAS | 16130169 |
No data available for SIGNOR curated interactions for CLIC2 Gene
Transcripts for CLIC2 Gene
mRNA/cDNA for CLIC2 Gene
- (1) REFSEQ mRNAs :
- (5) Additional mRNA sequences :
- (118) Selected AceView cDNA sequences:
- (4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
Unigene Clusters for CLIC2 Gene
CRISPR Products
-
OriGene CRISPR knockouts for CLIC2
- genomics-online: gRNA clones - Search results for 68 available CLIC2 gene related products
- Overview of 68 available CLIC2 gene related products
- Applied Biological Materials CRISPR for CLIC2
-
Vectors and viruses for KO, Activation, Repression, and more
-
Santa Cruz Biotechnology (SCBT) CRISPR for CLIC2
- GenScript: Design CRISPR guide RNA sequences for CLIC2
miRNA Products
- Search ViGene Biosciences for CLIC2
Inhibitory RNA Products
- Origene shrna, sirna, and RNAi products in human, mouse, rat for CLIC2
- Browse OriGene Inhibitory RNA Products For CLIC2
- genomics-online: shRNA clones - Search results for 68 available CLIC2 gene related products
- Overview of 68 available CLIC2 gene related products
-
ViGene Biosciences ready-to-package AAV shRNAs for CLIC2 gene
Clone Products
- Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat
- Applied Biological Materials Clones for CLIC2
-
Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more
Expression for CLIC2 Gene
mRNA expression in embryonic tissues and stem cells from LifeMap Discovery
-
Blood (Hematopoietic System)
- Erythroblasts Hematopoietic Bone Marrow
-
Spleen (Hematopoietic System)
Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for CLIC2 Gene
NURSA nuclear receptor signaling pathways regulating expression of CLIC2 Gene:
CLIC2SOURCE GeneReport for Unigene cluster for CLIC2 Gene:
Hs.655445mRNA Expression by UniProt/SwissProt for CLIC2 Gene:
O15247-CLIC2_HUMANEvidence on tissue expression from TISSUES for CLIC2 Gene
- Liver(4.3)
- Lung(4.3)
Phenotype-based relationships between genes and organs from Gene ORGANizer for CLIC2 Gene
- ectoderm
- endoderm
- mesoderm
- cardiovascular
- integumentary
- nervous
- reproductive
- respiratory
- skeleton
- brain
- ear
- head
- outer ear
- heart
- heart valve
- lung
- testicle
- ankle
- digit
- elbow
- finger
- foot
- hand
- hip
- knee
- lower limb
- shoulder
- toe
- upper limb
- wrist
- blood vessel
Primer Products
-
OriGene qPCR primer pairs and template standards for CLIC2
-
OriGene qPCR primer pairs for CLIC2
- genomics-online: primer clones - Search results for 68 available CLIC2 gene related products
- Overview of 68 available CLIC2 gene related products
No data available for mRNA differential expression in normal tissues for CLIC2 Gene
Orthologs for CLIC2 Gene
This gene was present in the common ancestor of eukaryotes.
Organism | Taxonomy | Gene | Similarity | Type | Details |
---|---|---|---|---|---|
chimpanzee (Pan troglodytes) |
Mammalia | CLIC2 33 34 |
|
||
dog (Canis familiaris) |
Mammalia | CLIC2 33 34 |
|
||
cow (Bos Taurus) |
Mammalia | CLIC2 33 34 |
|
||
rat (Rattus norvegicus) |
Mammalia | Clic2 33 |
|
||
platypus (Ornithorhynchus anatinus) |
Mammalia | CLIC2 34 |
|
OneToOne | |
oppossum (Monodelphis domestica) |
Mammalia | CLIC2 34 |
|
OneToOne | |
chicken (Gallus gallus) |
Aves | CLIC2 33 34 |
|
||
zebrafish (Danio rerio) |
Actinopterygii | clic2 33 34 |
|
||
fruit fly (Drosophila melanogaster) |
Insecta | Clic 34 |
|
OneToMany | |
worm (Caenorhabditis elegans) |
Secernentea | exl-1 34 |
|
ManyToMany | |
exc-4 34 |
|
ManyToMany | |||
thale cress (Arabidopsis thaliana) |
eudicotyledons | DHAR3 33 |
|
||
rice (Oryza sativa) |
Liliopsida | Os06g0232600 33 |
|
||
sea squirt (Ciona savignyi) |
Ascidiacea | CSA.6991 34 |
|
OneToMany |
- Species where no ortholog for CLIC2 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Ashbya gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- alpha proteobacteria (Wolbachia pipientis)
- amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- baker's yeast (Saccharomyces cerevisiae)
- barley (Hordeum vulgare)
- beta proteobacteria (Neisseria meningitidis)
- bread mold (Neurospora crassa)
- Chromalveolata (Phytophthora infestans)
- common water flea (Daphnia pulex)
- corn (Zea mays)
- E. coli (Escherichia coli)
- filamentous fungi (Aspergillus nidulans)
- Firmicute bacteria (Streptococcus pneumoniae)
- fission yeast (Schizosaccharomyces pombe)
- green algae (Chlamydomonas reinhardtii)
- honey bee (Apis mellifera)
- K. lactis yeast (Kluyveromyces lactis)
- lizard (Anolis carolinensis)
- loblloly pine (Pinus taeda)
- malaria parasite (Plasmodium falciparum)
- medicago trunc (Medicago Truncatula)
- moss (Physcomitrella patens)
- mouse (Mus musculus)
- orangutan (Pongo pygmaeus)
- pig (Sus scrofa)
- rainbow trout (Oncorhynchus mykiss)
- rice blast fungus (Magnaporthe grisea)
- schistosome parasite (Schistosoma mansoni)
- sea anemone (Nematostella vectensis)
- sea urchin (Strongylocentrotus purpuratus)
- sorghum (Sorghum bicolor)
- soybean (Glycine max)
- stem rust fungus (Puccinia graminis)
- sugarcane (Saccharum officinarum)
- tomato (Lycopersicon esculentum)
- toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- tropical clawed frog (Silurana tropicalis)
- wheat (Triticum aestivum)
Paralogs for CLIC2 Gene
Variants for CLIC2 Gene
SNP ID | Clin | Chr 0X pos | Variation | AA Info | Type |
---|---|---|---|---|---|
rs398122917 | pathogenic, Mental retardation, X-linked, syndromic 32, Mental retardation, X-linked, syndromic, 32 (MRXS32) [MIM:300886] | 155,280,059(-) | G/C | coding_sequence_variant, missense_variant | |
rs41304992 | likely-benign, not specified, not provided | 155,279,253(-) | G/C | coding_sequence_variant, missense_variant | |
rs7050330 | likely-benign, not provided | 155,334,361(-) | G/A | intron_variant | |
rs367873692 | likely-benign, not specified | 155,277,930(-) | G/A | coding_sequence_variant, synonymous_variant | |
rs559165 | benign, not specified | 155,277,884(-) | G/T | 3_prime_UTR_variant |
Variant ID | Type | Subtype | PubMed ID |
---|---|---|---|
dgv2548e212 | CNV | gain | 25503493 |
esv26400 | CNV | loss | 19812545 |
esv29972 | CNV | gain | 17803354 |
esv3308775 | CNV | mobile element insertion | 20981092 |
esv3376146 | CNV | insertion | 20981092 |
esv33784 | CNV | gain+loss | 17666407 |
nsv1132793 | CNV | duplication | 24896259 |
nsv1141718 | CNV | duplication | 24896259 |
nsv1146877 | CNV | duplication | 26484159 |
nsv508817 | CNV | insertion | 20534489 |
Additional Variant Information for CLIC2 Gene
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CLIC2 Gene
Disorders for CLIC2 Gene

(3) MalaCards diseases for CLIC2 Gene - From: HGMD, OMIM, ClinVar, GTR, Orphanet, Swiss-Prot, DISEASES, and GeneCards
Disorder | Aliases | PubMed IDs |
---|---|---|
mental retardation, x-linked, syndromic 32 |
|
|
chromosome xq28 duplication syndrome |
|
|
patau syndrome |
|
|
UniProtKB/Swiss-Prot
CLIC2_HUMAN- Mental retardation, X-linked, syndromic, 32 (MRXS32) [MIM:300886]: A mental retardation syndrome characterized by profound intellectual deficit, delayed psychomotor development beginning in infancy and little or no speech development. Additional features include seizures, large joint contractures, and abnormal positioning of the thumbs. Mental retardation is defined by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. {ECO:0000269 PubMed:22814392}. Note=The disease is caused by mutations affecting the gene represented in this entry.
Additional Disease Information for CLIC2
No data available for Genatlas for CLIC2 Gene
Publications for CLIC2 Gene
- Genomic structure of a novel chloride channel gene, CLIC2, in Xq28. (PMID: 9339381) Heiss NS … Poustka A (Genomics 1997) 2 3 4 22 58
- A recently identified member of the glutathione transferase structural family modifies cardiac RyR2 substate activity, coupled gating and activation by Ca2+ and ATP. (PMID: 15916532) Dulhunty AF … Board PG (The Biochemical journal 2005) 3 4 22 58
- CLIC-2 modulates cardiac ryanodine receptor Ca2+ release channels. (PMID: 15147738) Board PG … Dulhunty AF (The international journal of biochemistry & cell biology 2004) 3 4 22 58
- An X-linked channelopathy with cardiomegaly due to a CLIC2 mutation enhancing ryanodine receptor channel activity. (PMID: 22814392) Takano K … Dulhunty AF (Human molecular genetics 2012) 3 4 58
- The crystal structure of human chloride intracellular channel protein 2: a disulfide bond with functional implications. (PMID: 18186468) Mi W … Su XD (Proteins 2008) 3 4 58
Products for CLIC2 Gene
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- Overview of 68 available CLIC2 gene related products
Sources for CLIC2 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
- (19) MINT
- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
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