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Aliases for SLC27A3 Gene

Aliases for SLC27A3 Gene

  • Solute Carrier Family 27 (Fatty Acid Transporter), Member 3 2 3
  • FATP3 3 4 6
  • Very Long-Chain Acyl-CoA Synthetase Homolog 3 3 4
  • Solute Carrier Family 27 Member 3 3 4
  • Fatty Acid Transport Protein 3 3 4
  • ACSVL3 3 4
  • FATP-3 3 4
  • VLCS-3 3 4
  • Long-Chain Fatty Acid Transport Protein 3 3
  • EC 6.2.1.7 64
  • EC 6.2.1.- 4
  • EC 6.2.1 64

External Ids for SLC27A3 Gene

Summaries for SLC27A3 Gene

GeneCards Summary for SLC27A3 Gene

SLC27A3 (Solute Carrier Family 27 (Fatty Acid Transporter), Member 3) is a Protein Coding gene. GO annotations related to this gene include nucleotide binding and fatty-acyl-CoA synthase activity. An important paralog of this gene is SLC27A1.

UniProtKB/Swiss-Prot for SLC27A3 Gene

  • Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Does not exhibit fatty acid transport activity (By similarity).

Gene Wiki entry for SLC27A3 Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SLC27A3 Gene

Genomics for SLC27A3 Gene

Genomic Location for SLC27A3 Gene

Start:
153,774,354 bp from pter
End:
153,780,157 bp from pter
Size:
5,804 bases
Orientation:
Plus strand

Genomic View for SLC27A3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SLC27A3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SLC27A3 Gene

Regulatory Elements for SLC27A3 Gene

Proteins for SLC27A3 Gene

  • Protein details for SLC27A3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5K4L6-S27A3_HUMAN
    Recommended name:
    Long-chain fatty acid transport protein 3
    Protein Accession:
    Q5K4L6
    Secondary Accessions:
    • Q5VUQ7
    • Q5VUQ8
    • Q5VUR3
    • Q6ZV16
    • Q8N2X7
    • Q8TEJ0
    • Q96SW5
    • Q9BTJ5
    • Q9BTY5

    Protein attributes for SLC27A3 Gene

    Size:
    730 amino acids
    Molecular mass:
    78644 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH29792.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB55156.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAB84960.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAC86050.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAC86050.1; Type=Frameshift; Positions=540; Evidence={ECO:0000305}; Sequence=CAE12159.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAH71420.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for SLC27A3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SLC27A3 Gene

Proteomics data for SLC27A3 Gene at MOPED

Selected DME Specific Peptides for SLC27A3 Gene

Post-translational modifications for SLC27A3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SLC27A3 Gene

Domains for SLC27A3 Gene

Gene Families for SLC27A3 Gene

HGNC:
  • SLC :Solute carriers
  • ACS :Acyl-CoA synthetase family
IUPHAR :

Protein Domains for SLC27A3 Gene

UniProtKB/Swiss-Prot:

S27A3_HUMAN
Family:
  • Belongs to the ATP-dependent AMP-binding enzyme family.:
    • Q5K4L6
genes like me logo Genes that share domains with SLC27A3: view

Function for SLC27A3 Gene

Molecular function for SLC27A3 Gene

UniProtKB/Swiss-Prot Function: Has acyl-CoA ligase activity for long-chain and very-long-chain fatty acids. Does not exhibit fatty acid transport activity (By similarity).

Enzyme Numbers (IUBMB) for SLC27A3 Gene

Gene Ontology (GO) - Molecular Function for SLC27A3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000166 nucleotide binding IEA --
GO:0003824 catalytic activity --
GO:0004321 fatty-acyl-CoA synthase activity IEA --
GO:0004467 long-chain fatty acid-CoA ligase activity IEA --
GO:0016874 ligase activity --
genes like me logo Genes that share ontologies with SLC27A3: view

No data available for Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SLC27A3 Gene

Localization for SLC27A3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SLC27A3 Gene

Mitochondrion membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SLC27A3 Gene COMPARTMENTS Subcellular localization image for SLC27A3 gene
Compartment Confidence
mitochondrion 5
peroxisome 3
plasma membrane 3
endoplasmic reticulum 1
lysosome 1

Gene Ontology (GO) - Cellular Components for SLC27A3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion --
GO:0016020 membrane IDA 19946888
GO:0016021 integral component of membrane IEA --
GO:0031966 mitochondrial membrane IEA --
genes like me logo Genes that share ontologies with SLC27A3: view

Pathways for SLC27A3 Gene

SuperPathways for SLC27A3 Gene

No Data Available

Interacting Proteins for SLC27A3 Gene

Gene Ontology (GO) - Biological Process for SLC27A3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001676 long-chain fatty acid metabolic process IEA --
GO:0006631 fatty acid metabolic process --
GO:0008152 metabolic process --
genes like me logo Genes that share ontologies with SLC27A3: view

No data available for Pathways by source for SLC27A3 Gene

Compounds for SLC27A3 Gene

(40) HMDB Compounds for SLC27A3 Gene

Compound Synonyms Cas Number PubMed IDs
(2E)-Decenoyl-CoA
  • (E)-S-2-decenoate Coenzyme A
10018-95-8
(2E)-Dodecenoyl-CoA
  • 2-trans-Dodecenoyl-Coenzyme A
1066-12-2
(2E)-Hexadecenoyl-CoA
  • trans-2-Hexadecenoyl-CoA
4460-95-1
(2E)-Octenoyl-CoA
  • (E)-S-2-octenoate Coenzyme A
10018-94-7
(2E)-Tetradecenoyl-CoA
  • (2E)-Tetradecenoyl-Coenzyme A
38795-33-4
genes like me logo Genes that share compounds with SLC27A3: view

Transcripts for SLC27A3 Gene

Unigene Clusters for SLC27A3 Gene

Solute carrier family 27 (fatty acid transporter), member 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SLC27A3 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7a · 7b · 7c ^ 8 ^ 9a · 9b · 9c ^ 10
SP1: - - -
SP2: - - - -
SP3: - - -
SP4:
SP5:
SP6:
SP7: -

Relevant External Links for SLC27A3 Gene

GeneLoc Exon Structure for
SLC27A3
ECgene alternative splicing isoforms for
SLC27A3

Expression for SLC27A3 Gene

mRNA expression in normal human tissues for SLC27A3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for SLC27A3 Gene

SOURCE GeneReport for Unigene cluster for SLC27A3 Gene Hs.438723

genes like me logo Genes that share expressions with SLC27A3: view

Orthologs for SLC27A3 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for SLC27A3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SLC27A3 36
  • 96.68 (n)
  • 95.71 (a)
SLC27A3 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SLC27A3 36
  • 86.8 (n)
  • 86.29 (a)
SLC27A3 37
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SLC27A3 36
  • 85.36 (n)
  • 86.1 (a)
SLC27A3 37
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Slc27a3 36
  • 83.77 (n)
  • 86.05 (a)
Slc27a3 16
Slc27a3 37
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SLC27A3 37
  • 74 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Slc27a3 36
  • 83.62 (n)
  • 86.51 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.20896 36
zebrafish
(Danio rerio)
Actinopterygii SLC27A3 37
  • 44 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes FAT1 37
  • 28 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 36 (a)
OneToMany
Species with no ortholog for SLC27A3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SLC27A3 Gene

ENSEMBL:
Gene Tree for SLC27A3 (if available)
TreeFam:
Gene Tree for SLC27A3 (if available)

Paralogs for SLC27A3 Gene

Paralogs for SLC27A3 Gene

Selected SIMAP similar genes for SLC27A3 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with SLC27A3: view

Variants for SLC27A3 Gene

Sequence variations from dbSNP and Humsavar for SLC27A3 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1132822 -- 153,779,905(+) CCTGT(C/T)TGACC reference, missense
rs1132823 -- 153,779,922(+) ACGTT(C/T)TGGAC reference, synonymous-codon
rs1132826 -- 153,780,028(+) CCTGA(A/G)AGAGG utr-variant-3-prime
rs1140893 -- 153,779,120(+) TGGAA(A/G)GGGGA synonymous-codon, reference
rs3814001 -- 153,775,012(-) ACCAT(G/T)GCTCT utr-variant-5-prime, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SLC27A3 Gene

Variant ID Type Subtype PubMed ID
nsv515962 CNV Loss 19592680

Relevant External Links for SLC27A3 Gene

HapMap Linkage Disequilibrium report
SLC27A3

Disorders for SLC27A3 Gene

Relevant External Links for SLC27A3

Genetic Association Database (GAD)
SLC27A3
Human Genome Epidemiology (HuGE) Navigator
SLC27A3
genes like me logo Genes that share disorders with SLC27A3: view

No data available for UniProtKB/Swiss-Prot for SLC27A3 Gene

Publications for SLC27A3 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  3. A family of fatty acid transporters conserved from mycobacterium to man. (PMID: 9671728) Hirsch D. … Lodish H.F. (Proc. Natl. Acad. Sci. U.S.A. 1998) 2 3
  4. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3 4
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4

Products for SLC27A3 Gene

Sources for SLC27A3 Gene

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