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Aliases for CSPG5 Gene

Aliases for CSPG5 Gene

  • Chondroitin Sulfate Proteoglycan 5 2 3 5
  • Acidic Leucine-Rich EGF-Like Domain-Containing Brain Protein 3 4
  • Chondroitin Sulfate Proteoglycan 5 (Neuroglycan C) 2 3
  • Neuroglycan C 2 4
  • NGC 3 4
  • CALEB 4

External Ids for CSPG5 Gene

Previous GeneCards Identifiers for CSPG5 Gene

  • GC03M047401
  • GC03M046808
  • GC03M047564
  • GC03M047578
  • GC03M047603

Summaries for CSPG5 Gene

Entrez Gene Summary for CSPG5 Gene

  • The protein encoded by this gene is a proteoglycan that may function as a neural growth and differentiation factor. Several transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, May 2011]

GeneCards Summary for CSPG5 Gene

CSPG5 (Chondroitin Sulfate Proteoglycan 5) is a Protein Coding gene. Diseases associated with CSPG5 include spontaneous ocular nystagmus. Among its related pathways are Metabolism and Glycosaminoglycan metabolism. GO annotations related to this gene include growth factor activity.

UniProtKB/Swiss-Prot for CSPG5 Gene

  • May function as a growth and differentiation factor involved in neuritogenesis. May induce ERBB3 activation.

Gene Wiki entry for CSPG5 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for CSPG5 Gene

Genomics for CSPG5 Gene

Regulatory Elements for CSPG5 Gene

Genomic Location for CSPG5 Gene

Chromosome:
3
Start:
47,562,238 bp from pter
End:
47,580,792 bp from pter
Size:
18,555 bases
Orientation:
Minus strand

Genomic View for CSPG5 Gene

Genes around CSPG5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
CSPG5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for CSPG5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for CSPG5 Gene

Proteins for CSPG5 Gene

  • Protein details for CSPG5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95196-CSPG5_HUMAN
    Recommended name:
    Chondroitin sulfate proteoglycan 5
    Protein Accession:
    O95196
    Secondary Accessions:
    • Q71M39
    • Q71M40

    Protein attributes for CSPG5 Gene

    Size:
    566 amino acids
    Molecular mass:
    60016 Da
    Quaternary structure:
    • Binds TNR and probably TNC (By similarity). Interacts with ERBB3 and GOPC.
    Miscellaneous:
    • Different forms of various molecular weight have been observed. Such forms are possibly due to different levels of glycosylation, phosphorylation and/or protein cleavage (By similarity).

    Alternative splice isoforms for CSPG5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for CSPG5 Gene

Proteomics data for CSPG5 Gene at MOPED

Post-translational modifications for CSPG5 Gene

  • N-glycosylated.
  • O-glycosylated; contains chondroitin sulfate glycans. Part-time proteoglycan, expressed in part as a proteoglycan exhibiting chondroitin sulfate glycans and in part as a non-proteoglycan form. The relative amount of both forms depends on tissues and tissues maturation (By similarity).
  • Phosphorylated; in intracellular and extracellular parts.
  • Glycosylation at Asn 57, Ser 117, Ser 165, and Thr 328
  • Modification sites at PhosphoSitePlus

Other Protein References for CSPG5 Gene

Antibody Products

  • R&D Systems Antibodies for CSPG5 (Neuroglycan C/CSPG5)

No data available for DME Specific Peptides for CSPG5 Gene

Domains & Families for CSPG5 Gene

Protein Domains for CSPG5 Gene

Suggested Antigen Peptide Sequences for CSPG5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O95196

UniProtKB/Swiss-Prot:

CSPG5_HUMAN :
  • Contains 1 EGF-like domain.
Domain:
  • Contains 1 EGF-like domain.
genes like me logo Genes that share domains with CSPG5: view

No data available for Gene Families for CSPG5 Gene

Function for CSPG5 Gene

Molecular function for CSPG5 Gene

GENATLAS Biochemistry:
neuroglycan,neural transmembrane chondroitin sulfate proteoglycan,brain specific
UniProtKB/Swiss-Prot Function:
May function as a growth and differentiation factor involved in neuritogenesis. May induce ERBB3 activation.
genes like me logo Genes that share phenotypes with CSPG5: view

Animal Models for CSPG5 Gene

MGI Knock Outs for CSPG5:

Animal Model Products

  • Taconic Biosciences Mouse Models for CSPG5

miRNA for CSPG5 Gene

miRTarBase miRNAs that target CSPG5

Inhibitory RNA Products

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for CSPG5 Gene

Localization for CSPG5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for CSPG5 Gene

Cell membrane; Single-pass type I membrane protein. Endoplasmic reticulum membrane; Single-pass type I membrane protein. Golgi apparatus membrane; Single-pass type I membrane protein. Cell surface. Note=In neurons, localizes to synaptic junctions. Also detected in the endoplasmic reticulum and the Golgi. Partially enriched in lipid rafts. {ECO:0000250 UniProtKB:Q71M36, ECO:0000250 UniProtKB:Q9ERQ6}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for CSPG5 Gene COMPARTMENTS Subcellular localization image for CSPG5 gene
Compartment Confidence
extracellular 5
golgi apparatus 5
plasma membrane 5
endoplasmic reticulum 4
lysosome 4
vacuole 4
nucleus 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for CSPG5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005789 endoplasmic reticulum membrane IEA --
GO:0005796 Golgi lumen TAS --
GO:0009986 cell surface IEA --
genes like me logo Genes that share ontologies with CSPG5: view

Pathways & Interactions for CSPG5 Gene

genes like me logo Genes that share pathways with CSPG5: view

Pathways by source for CSPG5 Gene

Gene Ontology (GO) - Biological Process for CSPG5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005975 carbohydrate metabolic process TAS --
GO:0007399 nervous system development TAS 12885772
GO:0030203 glycosaminoglycan metabolic process TAS --
GO:0030207 chondroitin sulfate catabolic process TAS --
GO:0030208 dermatan sulfate biosynthetic process TAS --
genes like me logo Genes that share ontologies with CSPG5: view

No data available for SIGNOR curated interactions for CSPG5 Gene

Drugs & Compounds for CSPG5 Gene

No Compound Related Data Available

Transcripts for CSPG5 Gene

Unigene Clusters for CSPG5 Gene

Chondroitin sulfate proteoglycan 5 (neuroglycan C):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for CSPG5 Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5
SP1: - -
SP2: -
SP3: -

Relevant External Links for CSPG5 Gene

GeneLoc Exon Structure for
CSPG5
ECgene alternative splicing isoforms for
CSPG5

Expression for CSPG5 Gene

mRNA expression in normal human tissues for CSPG5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for CSPG5 Gene

This gene is overexpressed in Brain - Amygdala (x6.2), Brain - Nucleus accumbens (basal ganglia) (x5.4), Brain - Anterior cingulate cortex (BA24) (x5.1), Brain - Caudate (basal ganglia) (x4.9), Brain - Frontal Cortex (BA9) (x4.7), Brain - Putamen (basal ganglia) (x4.7), Brain - Cortex (x4.5), and Brain - Hippocampus (x4.5).

Protein differential expression in normal tissues from HIPED for CSPG5 Gene

This gene is overexpressed in Fetal Brain (31.0), Cerebrospinal fluid (23.0), Frontal cortex (7.9), and Esophagus (6.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for CSPG5 Gene



SOURCE GeneReport for Unigene cluster for CSPG5 Gene Hs.45127

mRNA Expression by UniProt/SwissProt for CSPG5 Gene

O95196-CSPG5_HUMAN
Tissue specificity: Restricted to brain (at protein level).
genes like me logo Genes that share expression patterns with CSPG5: view

Protein tissue co-expression partners for CSPG5 Gene

- Elite partner

Primer Products

In Situ Assay Products

Orthologs for CSPG5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for CSPG5 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia CSPG5 35
  • 89.43 (n)
  • 88.39 (a)
CSPG5 36
  • 84 (a)
OneToOne
dog
(Canis familiaris)
Mammalia CSPG5 35
  • 89.17 (n)
  • 89.6 (a)
CSPG5 36
  • 83 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cspg5 35
  • 85.63 (n)
  • 87.16 (a)
Cspg5 16
Cspg5 36
  • 86 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia CSPG5 35
  • 99.83 (n)
  • 99.5 (a)
CSPG5 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Cspg5 35
  • 85.45 (n)
  • 87.27 (a)
oppossum
(Monodelphis domestica)
Mammalia CSPG5 36
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves CSPG5 36
  • 40 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9906 35
zebrafish
(Danio rerio)
Actinopterygii cspg5a 36
  • 36 (a)
OneToMany
cspg5b 36
  • 28 (a)
OneToMany
Species with no ortholog for CSPG5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for CSPG5 Gene

ENSEMBL:
Gene Tree for CSPG5 (if available)
TreeFam:
Gene Tree for CSPG5 (if available)

Paralogs for CSPG5 Gene

No data available for Paralogs for CSPG5 Gene

Variants for CSPG5 Gene

Sequence variations from dbSNP and Humsavar for CSPG5 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs3732530 - 47,577,463(+) CTGGC(A/C)CTTGA reference, missense
rs34016925 - 47,572,819(+) GTCGG(G/T)GATGA reference, missense
rs869508 -- 47,571,812(+) TCTCT(G/T)GGGTC intron-variant
rs1471711 -- 47,563,008(-) ATGGC(A/C)CAAAT intron-variant
rs1880020 -- 47,576,030(-) AACCC(A/G)GGAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for CSPG5 Gene

Variant ID Type Subtype PubMed ID
nsv428417 CNV Loss 18775914
nsv3807 CNV Insertion 18451855

Variation tolerance for CSPG5 Gene

Residual Variation Intolerance Score: 43.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.01; 36.98% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for CSPG5 Gene

HapMap Linkage Disequilibrium report
CSPG5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for CSPG5 Gene

Disorders for CSPG5 Gene

MalaCards: The human disease database

(1) MalaCards diseases for CSPG5 Gene - From: DISEASES

Disorder Aliases PubMed IDs
spontaneous ocular nystagmus
  • ocular nystagmus
- elite association - COSMIC cancer census association via MalaCards
Search CSPG5 in MalaCards View complete list of genes associated with diseases

Relevant External Links for CSPG5

Genetic Association Database (GAD)
CSPG5
Human Genome Epidemiology (HuGE) Navigator
CSPG5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
CSPG5
genes like me logo Genes that share disorders with CSPG5: view

No data available for UniProtKB/Swiss-Prot and Genatlas for CSPG5 Gene

Publications for CSPG5 Gene

  1. Cloning and chromosomal mapping of the human gene of neuroglycan C (NGC), a neural transmembrane chondroitin sulfate proteoglycan with an EGF module. (PMID: 9950058) Yasuda Y. … Oohira A. (Neurosci. Res. 1998) 2 3 4 23 67
  2. Identification of neuroglycan C and interacting partners as potential susceptibility genes for schizophrenia in a Southern Chinese population. (PMID: 19367581) So H.C. … Sham P.C. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2010) 3 23
  3. Expression and identification of a new splice variant of neuroglycan C, a transmembrane chondroitin sulfate proteoglycan, in the human brain. (PMID: 16299773) Aono S. … Oohira A. (J. Neurosci. Res. 2006) 3 23
  4. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  5. Image-based genome-wide siRNA screen identifies selective autophagy factors. (PMID: 22020285) Orvedahl A. … Levine B. (Nature 2011) 3

Products for CSPG5 Gene

Sources for CSPG5 Gene

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