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Aliases for EXOC5 Gene

Aliases for EXOC5 Gene

  • Exocyst Complex Component 5 2 3
  • SEC10L1 3 4 6
  • Exocyst Complex Component Sec10 3 4
  • HSEC10 3 4
  • SEC10 3 4
  • SEC10 (S. Cerevisiae)-Like 1 2
  • SEC10-Like 1 (S. Cerevisiae) 2
  • SEC10-Like 1 3
  • PRO1912 3
  • SEC10P 3

External Ids for EXOC5 Gene

Previous HGNC Symbols for EXOC5 Gene

  • SEC10L1

Previous GeneCards Identifiers for EXOC5 Gene

  • GC14M056740
  • GC14M057669
  • GC14M037833

Summaries for EXOC5 Gene

Entrez Gene Summary for EXOC5 Gene

  • The protein encoded by this gene is a component of the exocyst complex, a multiple protein complex essential for targeting exocytic vesicles to specific docking sites on the plasma membrane. Though best characterized in yeast, the component proteins and functions of exocyst complex have been demonstrated to be highly conserved in higher eukaryotes. At least eight components of the exocyst complex, including this protein, are found to interact with the actin cytoskeletal remodeling and vesicle transport machinery. The complex is also essential for the biogenesis of epithelial cell surface polarity. [provided by RefSeq, Jul 2008]

GeneCards Summary for EXOC5 Gene

EXOC5 (Exocyst Complex Component 5) is a Protein Coding gene. Among its related pathways are Actin Nucleation by ARP-WASP Complex and Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein. GO annotations related to this gene include protein N-terminus binding.

UniProtKB/Swiss-Prot for EXOC5 Gene

  • Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane

Gene Wiki entry for EXOC5 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EXOC5 Gene

Genomics for EXOC5 Gene

Regulatory Elements for EXOC5 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for EXOC5 Gene

Start:
57,200,507 bp from pter
End:
57,269,008 bp from pter
Size:
68,502 bases
Orientation:
Minus strand

Genomic View for EXOC5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for EXOC5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EXOC5 Gene

Proteins for EXOC5 Gene

  • Protein details for EXOC5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O00471-EXOC5_HUMAN
    Recommended name:
    Exocyst complex component 5
    Protein Accession:
    O00471
    Secondary Accessions:
    • B2R6C5

    Protein attributes for EXOC5 Gene

    Size:
    708 amino acids
    Molecular mass:
    81853 Da
    Quaternary structure:
    • The exocyst complex is composed of EXOC1, EXOC2, EXOC3, EXOC4, EXOC5, EXOC6, EXOC7 and EXOC8. Interacts with EXOC3L1 (By similarity).

neXtProt entry for EXOC5 Gene

Proteomics data for EXOC5 Gene at MOPED

Post-translational modifications for EXOC5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for EXOC5 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for EXOC5 Gene

Domains for EXOC5 Gene

Protein Domains for EXOC5 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for EXOC5 Gene

Graphical View of Domain Structure for InterPro Entry

O00471

UniProtKB/Swiss-Prot:

EXOC5_HUMAN :
  • O00471
Family:
  • Belongs to the SEC10 family.
genes like me logo Genes that share domains with EXOC5: view

No data available for Gene Families for EXOC5 Gene

Function for EXOC5 Gene

Molecular function for EXOC5 Gene

UniProtKB/Swiss-Prot Function:
Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane

Gene Ontology (GO) - Molecular Function for EXOC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0017160 Ral GTPase binding IPI 24056301
GO:0047485 protein N-terminus binding IEA --
genes like me logo Genes that share ontologies with EXOC5: view

Phenotypes for EXOC5 Gene

GenomeRNAi human phenotypes for EXOC5:
genes like me logo Genes that share phenotypes with EXOC5: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for EXOC5

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for EXOC5 Gene

Localization for EXOC5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for EXOC5 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for EXOC5 Gene COMPARTMENTS Subcellular localization image for EXOC5 gene
Compartment Confidence
cytosol 4
mitochondrion 2
nucleus 2
plasma membrane 2
endosome 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for EXOC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm TAS 9119050
GO:0005829 cytosol TAS --
GO:0016020 membrane --
genes like me logo Genes that share ontologies with EXOC5: view

Pathways for EXOC5 Gene

genes like me logo Genes that share pathways with EXOC5: view

Pathways by source for EXOC5 Gene

Gene Ontology (GO) - Biological Process for EXOC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006887 exocytosis IEA --
GO:0006892 post-Golgi vesicle-mediated transport TAS 9119050
GO:0006996 organelle organization TAS --
GO:0015031 protein transport IEA --
GO:0016192 vesicle-mediated transport --
genes like me logo Genes that share ontologies with EXOC5: view

Transcripts for EXOC5 Gene

Unigene Clusters for EXOC5 Gene

Exocyst complex component 5:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for EXOC5

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for EXOC5 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18
SP1: -
SP2: - -
SP3:

Relevant External Links for EXOC5 Gene

GeneLoc Exon Structure for
EXOC5
ECgene alternative splicing isoforms for
EXOC5

Expression for EXOC5 Gene

mRNA expression in normal human tissues for EXOC5 Gene

Protein differential expression in normal tissues for EXOC5 Gene

This gene is overexpressed in Bone (48.2).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for EXOC5 Gene

SOURCE GeneReport for Unigene cluster for EXOC5 Gene Hs.743987

mRNA Expression by UniProt/SwissProt for EXOC5 Gene

O00471-EXOC5_HUMAN
Tissue specificity: Ubiquitous.
genes like me logo Genes that share expressions with EXOC5: view

Expression partners for EXOC5 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for EXOC5 Gene

Orthologs for EXOC5 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for EXOC5 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia EXOC5 35
  • 94.92 (n)
  • 98.02 (a)
EXOC5 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia EXOC5 35
  • 95.39 (n)
  • 99.44 (a)
EXOC5 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Exoc5 35
  • 92.23 (n)
  • 98.45 (a)
Exoc5 16
Exoc5 36
  • 98 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia EXOC5 35
  • 99.2 (n)
  • 99.44 (a)
EXOC5 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Exoc5 35
  • 91.53 (n)
  • 98.16 (a)
oppossum
(Monodelphis domestica)
Mammalia EXOC5 36
  • 95 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia EXOC5 36
  • 97 (a)
OneToOne
chicken
(Gallus gallus)
Aves EXOC5 35
  • 84.96 (n)
  • 95.62 (a)
EXOC5 36
  • 78 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia EXOC5 36
  • 86 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia exoc5 35
  • 79.43 (n)
  • 90.68 (a)
Str.1996 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.6619 35
zebrafish
(Danio rerio)
Actinopterygii exoc5 35
  • 72.88 (n)
  • 83.33 (a)
exoc5 36
  • 83 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004147 35
  • 51.04 (n)
  • 43.99 (a)
fruit fly
(Drosophila melanogaster)
Insecta sec10 35
  • 51.87 (n)
  • 43.96 (a)
sec10 36
  • 39 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea sec-10 35
  • 50.36 (n)
  • 37.46 (a)
sec-10 36
  • 34 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AGL130C 35
  • 42.15 (n)
  • 23.87 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D18260g 35
  • 42.49 (n)
  • 25.8 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SEC10 35
  • 44.89 (n)
  • 25.1 (a)
SEC10 36
  • 17 (a)
OneToOne
SEC10 38
thale cress
(Arabidopsis thaliana)
eudicotyledons SEC10 35
  • 42.12 (n)
  • 27.44 (a)
rice
(Oryza sativa)
Liliopsida Os12g0238100 35
  • 43.01 (n)
  • 28.41 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5751 35
bread mold
(Neurospora crassa)
Ascomycetes NCU09313 35
  • 38.74 (n)
  • 26.15 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes sec10 35
  • 39.38 (n)
  • 20.74 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2378 36
  • 48 (a)
OneToOne
Species with no ortholog for EXOC5:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for EXOC5 Gene

ENSEMBL:
Gene Tree for EXOC5 (if available)
TreeFam:
Gene Tree for EXOC5 (if available)

Paralogs for EXOC5 Gene

Selected SIMAP similar genes for EXOC5 Gene using alignment to 5 proteins:

Pseudogenes.org Pseudogenes for EXOC5 Gene

genes like me logo Genes that share paralogs with EXOC5: view

No data available for Paralogs for EXOC5 Gene

Variants for EXOC5 Gene

Sequence variations from dbSNP and Humsavar for EXOC5 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs716690 -- 57,261,934(-) gttct(A/G)tgttc intron-variant
rs1555788 -- 57,218,454(+) GTTTT(A/C)AGAAT intron-variant
rs1804820 -- 57,209,612(-) TTGGC(A/C)ATTTG synonymous-codon, reference
rs1804821 -- 57,208,612(-) TTCAG(A/C)TGAGA missense, reference
rs1960302 -- 57,215,139(+) AGGCA(A/G)GGGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for EXOC5 Gene

Variant ID Type Subtype PubMed ID
nsv901984 CNV Loss 21882294

Relevant External Links for EXOC5 Gene

HapMap Linkage Disequilibrium report
EXOC5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for EXOC5 Gene

Disorders for EXOC5 Gene

(1) University of Copenhagen DISEASES for EXOC5 Gene

Relevant External Links for EXOC5

Genetic Association Database (GAD)
EXOC5
Human Genome Epidemiology (HuGE) Navigator
EXOC5
genes like me logo Genes that share disorders with EXOC5: view

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , Novoseek inferred disease relationships and Genatlas for EXOC5 Gene

Publications for EXOC5 Gene

  1. Identification and characterization of homologues of the exocyst component Sec10p. (PMID: 9119050) Guo W. … Novick P. (FEBS Lett. 1997) 2 3 4 23
  2. Association between single-nucleotide polymorphisms in the SEC8L1 gene, which encodes a subunit of the exocyst complex, and rheumatoid arthritis in a Japanese population. (PMID: 15880602) Hamada D. … Itakura M. (Arthritis Rheum. 2005) 3 48
  3. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang A.G. … Kim N.S. (Biochem. Biophys. Res. Commun. 2006) 3
  4. A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. (PMID: 16713569) Lim J. … Zoghbi H.Y. (Cell 2006) 3
  5. The exocyst protein Sec10 is necessary for primary ciliogenesis and cystogenesis in vitro. (PMID: 19297529) Zuo X. … Lipschutz J.H. (Mol. Biol. Cell 2009) 3

Products for EXOC5 Gene

Sources for EXOC5 Gene

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