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Aliases for TOMM40 Gene

Aliases for TOMM40 Gene

  • Translocase Of Outer Mitochondrial Membrane 40 Homolog (Yeast) 2 3
  • PEREC1 3 4 6
  • TOM40 3 4 6
  • Translocase Of Outer Membrane 40 KDa Subunit Homolog 3 4
  • Protein Haymaker 3 4
  • C19orf1 3 4
  • P38.5 3 4
  • Mitochondrial Import Receptor Subunit TOM40 Homolog 3
  • Mitochondrial Outer Membrane Protein 3
  • D19S1177E 3
  • PER-EC1 3

External Ids for TOMM40 Gene

Previous GeneCards Identifiers for TOMM40 Gene

  • GC19P046039
  • GC19P045785
  • GC19P050070
  • GC19P050086
  • GC19P045394
  • GC19P041824

Summaries for TOMM40 Gene

Entrez Gene Summary for TOMM40 Gene

  • TOMM40 is the channel-forming subunit of the translocase of the mitochondrial outer membrane (TOM) complex that is essential for protein import into mitochondria (Humphries et al., 2005 [PubMed 15644312]).[supplied by OMIM, May 2008]

GeneCards Summary for TOMM40 Gene

TOMM40 (Translocase Of Outer Mitochondrial Membrane 40 Homolog (Yeast)) is a Protein Coding gene. Diseases associated with TOMM40 include wolfram syndrome 2 and charcot-marie-tooth neuropathy type 2a. Among its related pathways are Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein and Mitochondrial Protein Import. GO annotations related to this gene include porin activity and protein transmembrane transporter activity. An important paralog of this gene is TOMM40L.

UniProtKB/Swiss-Prot for TOMM40 Gene

  • Channel-forming protein essential for import of protein precursors into mitochondria.

Gene Wiki entry for TOMM40 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TOMM40 Gene

Genomics for TOMM40 Gene

Regulatory Elements for TOMM40 Gene

Genomic Location for TOMM40 Gene

Start:
44,890,569 bp from pter
End:
44,903,689 bp from pter
Size:
13,121 bases
Orientation:
Plus strand

Genomic View for TOMM40 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TOMM40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TOMM40 Gene

Proteins for TOMM40 Gene

  • Protein details for TOMM40 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O96008-TOM40_HUMAN
    Recommended name:
    Mitochondrial import receptor subunit TOM40 homolog
    Protein Accession:
    O96008
    Secondary Accessions:
    • Q86VW4
    • Q8WY09
    • Q8WY10
    • Q8WY11
    • Q9BR95

    Protein attributes for TOMM40 Gene

    Size:
    361 amino acids
    Molecular mass:
    37893 Da
    Quaternary structure:
    • Forms part of the preprotein translocase complex of the outer mitochondrial membrane (TOM complex) which consists of at least 7 different proteins (TOMM5, TOMM6, TOMM7, TOMM20, TOMM22, TOMM40 and TOMM70). Interacts with mitochondrial targeting sequences.

    Alternative splice isoforms for TOMM40 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TOMM40 Gene

Proteomics data for TOMM40 Gene at MOPED

Post-translational modifications for TOMM40 Gene

  • Ubiquitination at Lys184
  • Modification sites at PhosphoSitePlus

Other Protein References for TOMM40 Gene

No data available for DME Specific Peptides for TOMM40 Gene

Domains for TOMM40 Gene

Protein Domains for TOMM40 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TOMM40 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O96008

UniProtKB/Swiss-Prot:

TOM40_HUMAN :
  • O96008
Family:
  • Belongs to the Tom40 family.
genes like me logo Genes that share domains with TOMM40: view

No data available for Gene Families for TOMM40 Gene

Function for TOMM40 Gene

Molecular function for TOMM40 Gene

UniProtKB/Swiss-Prot Function: Channel-forming protein essential for import of protein precursors into mitochondria.

Gene Ontology (GO) - Molecular Function for TOMM40 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008320 protein transmembrane transporter activity TAS 15644312
GO:0015288 porin activity IEA --
genes like me logo Genes that share ontologies with TOMM40: view

Phenotypes for TOMM40 Gene

GenomeRNAi human phenotypes for TOMM40:
genes like me logo Genes that share phenotypes with TOMM40: view

miRNA for TOMM40 Gene

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for TOMM40 Gene

Localization for TOMM40 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TOMM40 Gene

Mitochondrion outer membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TOMM40 Gene COMPARTMENTS Subcellular localization image for TOMM40 gene
Compartment Confidence
mitochondrion 5
cytosol 2
extracellular 1
lysosome 1
nucleus 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for TOMM40 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
GO:0005739 NOT mitochondrion IMP 11745481
GO:0005741 mitochondrial outer membrane --
GO:0005742 mitochondrial outer membrane translocase complex IDA 12198123
genes like me logo Genes that share ontologies with TOMM40: view

Pathways for TOMM40 Gene

genes like me logo Genes that share pathways with TOMM40: view

Pathways by source for TOMM40 Gene

2 Reactome pathways for TOMM40 Gene
1 KEGG pathway for TOMM40 Gene

Gene Ontology (GO) - Biological Process for TOMM40 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006626 protein targeting to mitochondrion TAS --
GO:0006811 ion transport IEA --
GO:0044267 cellular protein metabolic process TAS --
GO:0055085 transmembrane transport --
GO:0071806 protein transmembrane transport TAS 15644312
genes like me logo Genes that share ontologies with TOMM40: view

Compounds for TOMM40 Gene

(5) Novoseek inferred chemical compound relationships for TOMM40 Gene

Compound -log(P) Hits PubMed IDs
benzodiazepine 45.3 4
steroid 19.4 3
atp 9.32 1
cholesterol 7.73 4
lipid 0 2

(2) PharmGKB related drug/compound annotations for TOMM40 Gene

genes like me logo Genes that share compounds with TOMM40: view

Transcripts for TOMM40 Gene

Unigene Clusters for TOMM40 Gene

Translocase of outer mitochondrial membrane 40 homolog (yeast):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TOMM40 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10
SP1: -
SP2: -
SP3:
SP4:
SP5:

Relevant External Links for TOMM40 Gene

GeneLoc Exon Structure for
TOMM40
ECgene alternative splicing isoforms for
TOMM40

Expression for TOMM40 Gene

mRNA expression in normal human tissues for TOMM40 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TOMM40 Gene

SOURCE GeneReport for Unigene cluster for TOMM40 Gene Hs.655909

genes like me logo Genes that share expressions with TOMM40: view

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TOMM40 Gene

Orthologs for TOMM40 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TOMM40 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TOMM40 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TOMM40 35
  • 91.04 (n)
  • 96.68 (a)
TOMM40 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TOMM40 35
  • 91.78 (n)
  • 96.4 (a)
TOMM40 36
  • 96 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tomm40 35
  • 88.64 (n)
  • 93.07 (a)
Tomm40 16
Tomm40 36
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TOMM40 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TOMM40 36
  • 74 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tomm40 35
  • 87.72 (n)
  • 91.69 (a)
lizard
(Anolis carolinensis)
Reptilia TOMM40 36
  • 82 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia tomm40-prov 35
tropical clawed frog
(Silurana tropicalis)
Amphibia MGC75995 35
tomm40 35
  • 72.62 (n)
  • 85.39 (a)
zebrafish
(Danio rerio)
Actinopterygii tomm40 35
  • 71.58 (n)
  • 77.88 (a)
tomm40 36
  • 74 (a)
OneToMany
tomm40l 36
  • 73 (a)
OneToMany
wufb68h07 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007871 35
  • 58.17 (n)
  • 53.92 (a)
fruit fly
(Drosophila melanogaster)
Insecta Tom40 35
  • 59.58 (n)
  • 55.05 (a)
Tom40 36
  • 50 (a)
ManyToMany
tomboy40 36
  • 47 (a)
ManyToMany
Tom40 37
  • 54 (a)
CG8330 37
  • 48 (a)
worm
(Caenorhabditis elegans)
Secernentea tomm-40 35
  • 51.48 (n)
  • 45.55 (a)
tomm-40 36
  • 44 (a)
OneToMany
C18E9.6 37
  • 45 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AFL183C 35
  • 44.36 (n)
  • 30.86 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes TOM40 35
  • 40.64 (n)
  • 30.48 (a)
TOM40 36
  • 21 (a)
OneToMany
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0F06292g 35
  • 39.19 (n)
  • 29.3 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G50400 35
  • 43.09 (n)
  • 31.94 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU01179 35
  • 48.15 (n)
  • 31.85 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes tom40 35
  • 40.22 (n)
  • 31.37 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2065 36
  • 46 (a)
OneToMany
Species with no ortholog for TOMM40:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TOMM40 Gene

ENSEMBL:
Gene Tree for TOMM40 (if available)
TreeFam:
Gene Tree for TOMM40 (if available)

Paralogs for TOMM40 Gene

Paralogs for TOMM40 Gene

Selected SIMAP similar genes for TOMM40 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with TOMM40: view

Variants for TOMM40 Gene

Sequence variations from dbSNP and Humsavar for TOMM40 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs10119 -- 44,903,416(-) AATTC(C/T)GGAAT utr-variant-3-prime
rs157580 -- 44,892,009(+) TCAGC(A/G)AGGTT intron-variant
rs157581 -- 44,892,457(-) ACCTG(A/G)AAATG synonymous-codon, reference
rs157582 -- 44,892,962(-) TAGAA(A/G)GATAC intron-variant
rs157583 -- 44,893,416(-) TCAGT(A/C)CCCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TOMM40 Gene

Variant ID Type Subtype PubMed ID
dgv3948n71 CNV Loss 21882294
nsv509747 CNV Insertion 20534489
dgv3949n71 CNV Loss 21882294
nsv912133 CNV Loss 21882294
nsv912134 CNV Loss 21882294

Relevant External Links for TOMM40 Gene

HapMap Linkage Disequilibrium report
TOMM40
Human Gene Mutation Database (HGMD)
TOMM40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TOMM40 Gene

Disorders for TOMM40 Gene

(1) University of Copenhagen DISEASES for TOMM40 Gene

(1) Novoseek inferred disease relationships for TOMM40 Gene

Disease -log(P) Hits PubMed IDs
necrosis 0 1

Relevant External Links for TOMM40

Genetic Association Database (GAD)
TOMM40
Human Genome Epidemiology (HuGE) Navigator
TOMM40
genes like me logo Genes that share disorders with TOMM40: view

No data available for UniProtKB/Swiss-Prot for TOMM40 Gene

Publications for TOMM40 Gene

  1. Genetic identity and differential expression of p38.5 (Haymaker) in human malignant and non-malignant cells. (PMID: 11745481) Das B. … Norin A.J. (Int. J. Cancer 2001) 3 4 23
  2. Hippocampal atrophy as a quantitative trait in a genome-wide association study identifying novel susceptibility genes for Alzheimer's disease. (PMID: 19668339) Potkin S.G. … Macciardi F. (PLoS ONE 2009) 3 23 48
  3. Dissection of the mitochondrial import and assembly pathway for human Tom40. (PMID: 15644312) Humphries A.D. … Ryan M.T. (J. Biol. Chem. 2005) 2 3 4
  4. Sequencing of 42kb of the APO E-C2 gene cluster reveals a new gene: PEREC1. (PMID: 10520737) Freitas E.M. … Dawkins R.L. (DNA Seq. 1998) 3 4
  5. Characterization of rat TOM40, a central component of the preprotein translocase of the mitochondrial outer membrane. (PMID: 10980201) Suzuki H. … Mihara K. (J. Biol. Chem. 2000) 2 3

Products for TOMM40 Gene

Sources for TOMM40 Gene

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