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Aliases for EGOT Gene

Subcategory (RNA class) for EGOT Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for EGOT Gene

  • Eosinophil Granule Ontogeny Transcript (Non-Protein Coding) 2 3 5
  • Eosinophil Granule Ontogeny 2
  • Non-Protein Coding RNA 190 2
  • NCRNA00190 3
  • EGO 3

External Ids for EGOT Gene

Summaries for EGOT Gene

GeneCards Summary for EGOT Gene

EGOT (Eosinophil Granule Ontogeny Transcript (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with EGOT include carpal tunnel syndrome, familial and nerve compression syndrome.

Gene Wiki entry for EGOT Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for EGOT Gene

Genomics for EGOT Gene

Regulatory Elements for EGOT Gene

Enhancers for EGOT Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around EGOT on UCSC Golden Path with GeneCards custom track

Promoters for EGOT Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around EGOT on UCSC Golden Path with GeneCards custom track

Genomic Location for EGOT Gene

Chromosome:
3
Start:
4,749,192 bp from pter
End:
4,751,590 bp from pter
Size:
2,399 bases
Orientation:
Minus strand

Genomic View for EGOT Gene

Genes around EGOT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
EGOT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for EGOT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for EGOT Gene

Proteins for EGOT Gene

Post-translational modifications for EGOT Gene

No Post-translational modifications

No data available for DME Specific Peptides for EGOT Gene

Domains & Families for EGOT Gene

Gene Families for EGOT Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with EGOT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for EGOT Gene

Function for EGOT Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for EGOT Gene

Localization for EGOT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for EGOT Gene

Pathways & Interactions for EGOT Gene

SuperPathways for EGOT Gene

No Data Available

Interacting Proteins for EGOT Gene

Gene Ontology (GO) - Biological Process for EGOT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for EGOT Gene

Drugs & Compounds for EGOT Gene

No Compound Related Data Available

Transcripts for EGOT Gene

mRNA/cDNA for EGOT Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for EGOT Gene

Eosinophil granule ontogeny transcript (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for EGOT Gene

No ASD Table

Relevant External Links for EGOT Gene

GeneLoc Exon Structure for
EGOT
ECgene alternative splicing isoforms for
EGOT

Expression for EGOT Gene

mRNA expression in normal human tissues for EGOT Gene

mRNA differential expression in normal tissues according to GTEx for EGOT Gene

This gene is overexpressed in Kidney - Cortex (x14.3), Pancreas (x4.6), and Breast - Mammary Tissue (x4.2).

SOURCE GeneReport for Unigene cluster for EGOT Gene Hs.663059

genes like me logo Genes that share expression patterns with EGOT: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for EGOT Gene

Orthologs for EGOT Gene

Evolution for EGOT Gene

ENSEMBL:
Gene Tree for EGOT (if available)
TreeFam:
Gene Tree for EGOT (if available)

No data available for Orthologs for EGOT Gene

Paralogs for EGOT Gene

No data available for Paralogs for EGOT Gene

Variants for EGOT Gene

Structural Variations from Database of Genomic Variants (DGV) for EGOT Gene

Variant ID Type Subtype PubMed ID
nsv460357 CNV Loss 19166990

Relevant External Links for EGOT Gene

HapMap Linkage Disequilibrium report
EGOT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Variation tolerance for EGOT Gene

Disorders for EGOT Gene

MalaCards: The human disease database

(2) MalaCards diseases for EGOT Gene - From: DISEASES

Disorder Aliases PubMed IDs
carpal tunnel syndrome, familial
  • carpal tunnel syndrome
nerve compression syndrome
  • compression neuropathy
- elite association - COSMIC cancer census association via MalaCards
Search EGOT in MalaCards View complete list of genes associated with diseases

Relevant External Links for EGOT

Genetic Association Database (GAD)
EGOT
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
EGOT
genes like me logo Genes that share disorders with EGOT: view

No data available for UniProtKB/Swiss-Prot and Genatlas for EGOT Gene

Publications for EGOT Gene

  1. Molecular evolution of the non-coding eosinophil granule ontogeny transcript. (PMID: 22303364) Rose D. … Stadler P.F. (Front Genet 2011) 2 3 67
  2. EGO, a novel, noncoding RNA gene, regulates eosinophil granule protein transcript expression. (PMID: 17351112) Wagner L.A. … Gleich G.J. (Blood 2007) 2 3
  3. Downregulation of the long noncoding RNA EGOT correlates with malignant status and poor prognosis in breast cancer. (PMID: 26159853) Xu S.P. … Pang D. (Tumour Biol. 2015) 3
  4. Large-scale genotyping identifies 41 new loci associated with breast cancer risk. (PMID: 23535729) Michailidou K. … Easton D.F. (Nat. Genet. 2013) 3
  5. lncRNAdb: a reference database for long noncoding RNAs. (PMID: 21112873) Amaral P.P. … Mattick J.S. (Nucleic Acids Res. 2011) 3

Products for EGOT Gene

Sources for EGOT Gene

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