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Aliases for TANK Gene

Aliases for TANK Gene

  • TRAF Family Member-Associated NFKB Activator 2 3
  • ITRAF 3 4 6
  • TRAF-Interacting Protein 3 4
  • I-TRAF 3 4
  • TRAF2 3 4
  • TRAF Family Member-Associated NF-Kappa-B Activator 3

External Ids for TANK Gene

Previous Symbols for TANK Gene

  • TRAF2

Summaries for TANK Gene

Entrez Gene Summary for TANK Gene

  • The TRAF (tumor necrosis factor receptor-associated factor) family of proteins associate with and transduce signals from members of the tumor necrosis factor receptor superfamily. The protein encoded by this gene is found in the cytoplasm and can bind to TRAF1, TRAF2, or TRAF3, thereby inhibiting TRAF function by sequestering the TRAFs in a latent state in the cytoplasm. For example, the protein encoded by this gene can block TRAF2 binding to LMP1, the Epstein-Barr virus transforming protein, and inhibit LMP1-mediated NF-kappa-B activation. Three alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2010]

GeneCards Summary for TANK Gene

TANK (TRAF Family Member-Associated NFKB Activator) is a Protein Coding gene. Among its related pathways are MAPK signaling pathway and Pathways in cancer. GO annotations related to this gene include ubiquitin protein ligase binding.

UniProtKB/Swiss-Prot for TANK Gene

  • Adapter protein involved in I-kappa-B-kinase (IKK) regulation which constitutively binds TBK1 and IKBKE playing a role in antiviral innate immunity. Acts as a regulator of TRAF function by maintaining them in a latent state. Blocks TRAF2 binding to LMP1 and inhibits LMP1-mediated NF-kappa-B activation. May control negatively TRAF2-mediated NF-kappa-B activation signaled by CD40, TNFR1 and TNFR2.

Gene Wiki entry for TANK Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TANK Gene

Genomics for TANK Gene

Genomic Location for TANK Gene

Start:
161,136,908 bp from pter
End:
161,236,221 bp from pter
Size:
99,314 bases
Orientation:
Plus strand

Genomic View for TANK Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TANK Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TANK Gene

Regulatory Elements for TANK Gene

Proteins for TANK Gene

  • Protein details for TANK Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q92844-TANK_HUMAN
    Recommended name:
    TRAF family member-associated NF-kappa-B activator
    Protein Accession:
    Q92844
    Secondary Accessions:
    • D3DPB5
    • Q7Z4J6
    • Q92885

    Protein attributes for TANK Gene

    Size:
    425 amino acids
    Molecular mass:
    47816 Da
    Quaternary structure:
    • Homodimer. Interacts with TBK1 and IKBKE. Interacts also with TRAF1, TRAF2, and TRAF3 by binding to their TRAF-C domains; the interaction with TRAF2 is disrupted by the phosphorylation of TANK by IKBKE. Interacts more strongly with TRAF1 and TRAF2 than TRAF3. Interacts with IKBKG; the interaction is enhanced by IKBKE and TBK1. Part of a ternary complex consisting of TANK, IKBKB and IKBKG.

    Three dimensional structures from OCA and Proteopedia for TANK Gene

    Alternative splice isoforms for TANK Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TANK Gene

Proteomics data for TANK Gene at MOPED

Post-translational modifications for TANK Gene

No data available for DME Specific Peptides for TANK Gene

Domains for TANK Gene

Protein Domains for TANK Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

TANK_HUMAN
Similarity:
  • Contains 1 C2H2-type zinc finger.:
    • Q92844
genes like me logo Genes that share domains with TANK: view

No data available for Gene Families for TANK Gene

Function for TANK Gene

Molecular function for TANK Gene

GENATLAS Biochemistry: tumor necrosis receptor-associated factor ,TRAF-interacting protein,mediator of NFKB activation after induction by TRAF2
UniProtKB/Swiss-Prot Function: Adapter protein involved in I-kappa-B-kinase (IKK) regulation which constitutively binds TBK1 and IKBKE playing a role in antiviral innate immunity. Acts as a regulator of TRAF function by maintaining them in a latent state. Blocks TRAF2 binding to LMP1 and inhibits LMP1-mediated NF-kappa-B activation. May control negatively TRAF2-mediated NF-kappa-B activation signaled by CD40, TNFR1 and TNFR2.

Gene Ontology (GO) - Molecular Function for TANK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 12005438
GO:0031625 ubiquitin protein ligase binding IPI 11279055
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with TANK: view
genes like me logo Genes that share phenotypes with TANK: view

Animal Models for TANK Gene

MGI Knock Outs for TANK:

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for TANK Gene

Localization for TANK Gene

Subcellular locations from UniProtKB/Swiss-Prot for TANK Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TANK Gene COMPARTMENTS Subcellular localization image for TANK gene
Compartment Confidence
cytosol 4
nucleus 3

Gene Ontology (GO) - Cellular Components for TANK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with TANK: view

Pathways for TANK Gene

genes like me logo Genes that share pathways with TANK: view

Gene Ontology (GO) - Biological Process for TANK Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002224 toll-like receptor signaling pathway TAS --
GO:0002756 MyD88-independent toll-like receptor signaling pathway TAS --
GO:0007165 signal transduction TAS 8710854
GO:0007249 I-kappaB kinase/NF-kappaB signaling IEA --
GO:0034138 toll-like receptor 3 signaling pathway TAS --
genes like me logo Genes that share ontologies with TANK: view

Compounds for TANK Gene

(1) Novoseek inferred chemical compound relationships for TANK Gene

Compound -log(P) Hits PubMed IDs
zinc 13.1 4
genes like me logo Genes that share compounds with TANK: view

Transcripts for TANK Gene

Unigene Clusters for TANK Gene

TRAF family member-associated NFKB activator:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TANK Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8 ^ 9a · 9b · 9c ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b · 13c ^ 14 ^
SP1: - - - - - - - - - -
SP2: - - - - - - - - - - - - -
SP3: - - - - - - - - - -
SP4: - - -
SP5: - - - - - - -
SP6: - - - - - - -
SP7: - -
SP8:
SP9:
SP10:
SP11: - - - - - - - - -

ExUns: 15a · 15b
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:

Relevant External Links for TANK Gene

GeneLoc Exon Structure for
TANK
ECgene alternative splicing isoforms for
TANK

Expression for TANK Gene

mRNA expression in normal human tissues for TANK Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TANK Gene

SOURCE GeneReport for Unigene cluster for TANK Gene Hs.132257

mRNA Expression by UniProt/SwissProt for TANK Gene

Q92844-TANK_HUMAN
Tissue specificity: Ubiquitous
genes like me logo Genes that share expressions with TANK: view

Orthologs for TANK Gene

This gene was present in the common ancestor of chordates.

Orthologs for TANK Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TANK 36
  • 99.53 (n)
  • 99.29 (a)
TANK 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TANK 36
  • 91.55 (n)
  • 87.91 (a)
TANK 37
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TANK 36
  • 90.12 (n)
  • 87.06 (a)
TANK 37
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tank 36
  • 86.52 (n)
  • 82.08 (a)
Tank 16
Tank 37
  • 76 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TANK 37
  • 55 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 37
  • 52 (a)
OneToMany
-- 37
  • 63 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Tank 36
  • 87.01 (n)
  • 81.6 (a)
chicken
(Gallus gallus)
Aves TANK 36
  • 67.13 (n)
  • 51.27 (a)
TANK 37
  • 45 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TANK 37
  • 40 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tank 36
  • 53.43 (n)
  • 40.59 (a)
zebrafish
(Danio rerio)
Actinopterygii tank 36
  • 48.38 (n)
  • 33.33 (a)
tank 37
  • 27 (a)
OneToOne
Species with no ortholog for TANK:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TANK Gene

ENSEMBL:
Gene Tree for TANK (if available)
TreeFam:
Gene Tree for TANK (if available)

Paralogs for TANK Gene

No data available for Paralogs for TANK Gene

Variants for TANK Gene

Sequence variations from dbSNP and Humsavar for TANK Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs889914 -- 161,176,059(+) GCCTC(C/T)TGGGT intron-variant
rs889915 -- 161,176,116(+) TATAA(A/G)TAAAA intron-variant
rs889916 -- 161,176,151(+) TATTG(C/T)GGAAG intron-variant
rs889917 -- 161,176,325(+) AGTGT(C/T)GCTGA intron-variant
rs979414 -- 161,135,413(+) CAGGA(G/T)CCTGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TANK Gene

Variant ID Type Subtype PubMed ID
nsv834437 CNV Gain 17160897
esv2670224 CNV Deletion 23128226
esv270537 CNV Insertion 20981092
nsv507044 CNV Insertion 20534489
nsv3004 CNV Insertion 18451855
nsv437557 CNV Loss 16327808
nsv459934 CNV Loss 19166990
esv259615 OTHER Complex 20981092

Relevant External Links for TANK Gene

HapMap Linkage Disequilibrium report
TANK

Disorders for TANK Gene

(4) Novoseek inferred disease relationships for TANK Gene

Disease -log(P) Hits PubMed IDs
necrosis 62.6 13
tumors 42.3 13
latent infection 34.9 1
hyperplasia 0 1

Relevant External Links for TANK

Genetic Association Database (GAD)
TANK
Human Genome Epidemiology (HuGE) Navigator
TANK
genes like me logo Genes that share disorders with TANK: view

No data available for UniProtKB/Swiss-Prot for TANK Gene

Publications for TANK Gene

  1. I-TRAF is a novel TRAF-interacting protein that regulates TRAF- mediated signal transduction. (PMID: 8710854) Rothe M. … Goeddel D.V. (Proc. Natl. Acad. Sci. U.S.A. 1996) 2 3 4 23
  2. NF-kB activation by a signaling complex containing TRAF2, TANK, and TBK1, a novel IKK-related kinase. (PMID: 10581243) Pomerantz J.L. … Baltimore D. (EMBO J. 1999) 3 4 23
  3. Downstream regulator TANK binds to the CD40 recognition site on TRAF3. (PMID: 12005438) Li C. … Ely K.R. (Structure 2002) 3 4 23
  4. Investigation of genetic variants within candidate genes of the TNFRSF1B signalling pathway on the response to anti-TNF agents in a UK cohort of rheumatoid arthritis patients. (PMID: 19262425) Bowes J.D. … Barton A. (Pharmacogenet. Genomics 2009) 3 23 49
  5. Large-scale candidate gene analysis of spontaneous clearance of hepatitis C virus. (PMID: 20331378) Mosbruger T.L. … Thio C.L. (J. Infect. Dis. 2010) 3 23 49

Products for TANK Gene

Sources for TANK Gene

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