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Aliases for COX10 Gene

Aliases for COX10 Gene

  • COX10 Heme A:Farnesyltransferase Cytochrome C Oxidase Assembly Factor 2 3
  • Heme O Synthase 2 4
  • COX10 Homolog, Cytochrome C Oxidase Assembly Protein, Heme A: Farnesyltransferase (Yeast) 2
  • Cytochrome C Oxidase Assembly Homolog 10 (Yeast) 2
  • Protoheme IX Farnesyltransferase 2
  • Mitochondrial 2
  • EC 2.5.1.- 4

External Ids for COX10 Gene

Summaries for COX10 Gene

Entrez Gene Summary for COX10 Gene

  • Cytochrome c oxidase (COX), the terminal component of the mitochondrial respiratory chain, catalyzes the electron transfer from reduced cytochrome c to oxygen. This component is a heteromeric complex consisting of 3 catalytic subunits encoded by mitochondrial genes and multiple structural subunits encoded by nuclear genes. The mitochondrially-encoded subunits function in electron transfer, and the nuclear-encoded subunits may function in the regulation and assembly of the complex. This nuclear gene encodes heme A:farnesyltransferase, which is not a structural subunit but required for the expression of functional COX and functions in the maturation of the heme A prosthetic group of COX. This protein is predicted to contain 7-9 transmembrane domains localized in the mitochondrial inner membrane. A gene mutation, which results in the substitution of a lysine for an asparagine (N204K), is identified to be responsible for cytochrome c oxidase deficiency. In addition, this gene is disrupted in patients with CMT1A (Charcot-Marie-Tooth type 1A) duplication and with HNPP (hereditary neuropathy with liability to pressure palsies) deletion. [provided by RefSeq, Jul 2008]

GeneCards Summary for COX10 Gene

COX10 (COX10 Heme A:Farnesyltransferase Cytochrome C Oxidase Assembly Factor) is a Protein Coding gene. Diseases associated with COX10 include mitochondrial complex iv deficiency and leigh syndrome. Among its related pathways are Metabolism and Metabolism. GO annotations related to this gene include cytochrome-c oxidase activity and protoheme IX farnesyltransferase activity.

UniProtKB/Swiss-Prot for COX10 Gene

  • Converts protoheme IX and farnesyl diphosphate to heme O.

Gene Wiki entry for COX10 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for COX10 Gene

Genomics for COX10 Gene

Genomic Location for COX10 Gene

Start:
14,069,402 bp from pter
End:
14,208,679 bp from pter
Size:
139,278 bases
Orientation:
Plus strand

Genomic View for COX10 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for COX10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for COX10 Gene

No data available for Regulatory Elements for COX10 Gene

Proteins for COX10 Gene

  • Protein details for COX10 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q12887-COX10_HUMAN
    Recommended name:
    Protoheme IX farnesyltransferase, mitochondrial
    Protein Accession:
    Q12887
    Secondary Accessions:
    • B2R6U5
    • B4DJ50
    • O15334
    • Q969F7

    Protein attributes for COX10 Gene

    Size:
    443 amino acids
    Molecular mass:
    48910 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for COX10 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for COX10 Gene

Proteomics data for COX10 Gene at MOPED

Post-translational modifications for COX10 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for COX10 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for COX10 Gene

Domains for COX10 Gene

Gene Families for COX10 Gene

HGNC:
  • MITOAF :Mitochondrial respiratory chain complex assembly factors

UniProtKB/Swiss-Prot:

COX10_HUMAN
Family:
  • Belongs to the UbiA prenyltransferase family.:
    • Q12887
genes like me logo Genes that share domains with COX10: view

Function for COX10 Gene

Molecular function for COX10 Gene

GENATLAS Biochemistry: heme A
UniProtKB/Swiss-Prot Function: Converts protoheme IX and farnesyl diphosphate to heme O.

Enzyme Numbers (IUBMB) for COX10 Gene

Gene Ontology (GO) - Molecular Function for COX10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004129 contributes_to cytochrome-c oxidase activity IMP 12928484
GO:0004311 farnesyltranstransferase activity TAS 8078902
GO:0004659 prenyltransferase activity --
GO:0008495 protoheme IX farnesyltransferase activity IEA --
genes like me logo Genes that share ontologies with COX10: view
genes like me logo Genes that share phenotypes with COX10: view

miRNA for COX10 Gene

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for COX10 Gene

Localization for COX10 Gene

Subcellular locations from UniProtKB/Swiss-Prot for COX10 Gene

Mitochondrion membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for COX10 Gene COMPARTMENTS Subcellular localization image for COX10 gene
Compartment Confidence
mitochondrion 5
plasma membrane 3
cytosol 1
nucleus 1

Gene Ontology (GO) - Cellular Components for COX10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IC 14607829
GO:0005743 mitochondrial inner membrane TAS --
GO:0016021 integral component of membrane IEA --
GO:0031966 mitochondrial membrane --
GO:0070069 cytochrome complex IMP 12928484
genes like me logo Genes that share ontologies with COX10: view

Pathways for COX10 Gene

genes like me logo Genes that share pathways with COX10: view

Pathways by source for COX10 Gene

1 Qiagen pathway for COX10 Gene
3 Reactome pathways for COX10 Gene

Gene Ontology (GO) - Biological Process for COX10 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000266 mitochondrial fission IEA --
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen IC 12928484
GO:0006778 porphyrin-containing compound metabolic process TAS --
GO:0006783 heme biosynthetic process TAS --
GO:0006784 heme a biosynthetic process IMP 12928484
genes like me logo Genes that share ontologies with COX10: view

Compounds for COX10 Gene

(1) HMDB Compounds for COX10 Gene

Compound Synonyms Cas Number PubMed IDs
Heme
  • (protoporphyrinato)iron
14875-96-8
genes like me logo Genes that share compounds with COX10: view

Transcripts for COX10 Gene

Unigene Clusters for COX10 Gene

Cytochrome c oxidase assembly homolog 10 (yeast):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for COX10 Gene

No ASD Table

Relevant External Links for COX10 Gene

GeneLoc Exon Structure for
COX10
ECgene alternative splicing isoforms for
COX10

Expression for COX10 Gene

mRNA expression in normal human tissues for COX10 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for COX10 Gene

This gene is overexpressed in Muscle - Skeletal (5.8) and Heart - Left Ventricle (4.7).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for COX10 Gene

SOURCE GeneReport for Unigene cluster for COX10 Gene Hs.462278

genes like me logo Genes that share expressions with COX10: view

Orthologs for COX10 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for COX10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia COX10 36
  • 99.55 (n)
  • 100 (a)
COX10 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia COX10 36
  • 84.27 (n)
  • 85.55 (a)
COX10 37
  • 86 (a)
OneToOne
dog
(Canis familiaris)
Mammalia COX10 36
  • 86.1 (n)
  • 86.56 (a)
COX10 37
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Cox10 36
  • 81.37 (n)
  • 82.35 (a)
Cox10 16
Cox10 37
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia COX10 37
  • 68 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia COX10 37
  • 84 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC691853 36
  • 81.27 (n)
  • 81.35 (a)
chicken
(Gallus gallus)
Aves COX10 36
  • 72.79 (n)
  • 72.06 (a)
COX10 37
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia COX10 37
  • 70 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.3727 36
tropical clawed frog
(Silurana tropicalis)
Amphibia cox10 36
  • 68.14 (n)
  • 69.01 (a)
zebrafish
(Danio rerio)
Actinopterygii cox10 36
  • 62.88 (n)
  • 63.53 (a)
cox10 37
  • 59 (a)
OneToOne
wufb18a03 36
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008884 36
  • 57.96 (n)
  • 54.7 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG5037 36
  • 60.43 (n)
  • 59.92 (a)
CG5037 37
  • 45 (a)
OneToOne
CG5037 38
  • 58 (a)
worm
(Caenorhabditis elegans)
Secernentea CELE_Y46G5A.2 36
  • 53.53 (n)
  • 47.02 (a)
cox-10 37
  • 39 (a)
OneToOne
Y46G5A.2 38
  • 52 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes COX10 37
  • 29 (a)
OneToOne
COX10 39
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.10722 36
sea squirt
(Ciona savignyi)
Ascidiacea CSA.9411 37
  • 41 (a)
OneToOne
Species with no ortholog for COX10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for COX10 Gene

ENSEMBL:
Gene Tree for COX10 (if available)
TreeFam:
Gene Tree for COX10 (if available)

Paralogs for COX10 Gene

Pseudogenes.org Pseudogenes for COX10 Gene

genes like me logo Genes that share paralogs with COX10: view

No data available for Paralogs for COX10 Gene

Variants for COX10 Gene

Sequence variations from dbSNP and Humsavar for COX10 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs13183 -- 14,208,291(+) AAATA(C/T)GGTTA utr-variant-3-prime
rs15046 -- 14,208,395(+) GTCTC(C/T)CAGGG utr-variant-3-prime
rs151441 -- 14,192,249(-) CTCAT(A/G)TGAGA intron-variant
rs722554 -- 14,134,765(-) GGGCA(A/T)TTAAT intron-variant
rs724887 -- 14,114,529(-) TTTGA(A/T)CAATG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for COX10 Gene

Variant ID Type Subtype PubMed ID
dgv927e1 CNV Complex 17122850
essv14935 CNV CNV 17122850
esv2675659 CNV Deletion 23128226
nsv9495 CNV Loss 18304495
esv2657336 CNV Deletion 23128226
nsv510699 CNV Loss 20534489
nsv436740 CNV Insertion 17901297
nsv907693 CNV Loss 21882294

Relevant External Links for COX10 Gene

HapMap Linkage Disequilibrium report
COX10
Human Gene Mutation Database (HGMD)
COX10

Disorders for COX10 Gene

(2) OMIM Diseases for COX10 Gene (602125)

UniProtKB/Swiss-Prot

COX10_HUMAN
  • Mitochondrial complex IV deficiency (MT-C4D) [MIM:220110]: A disorder of the mitochondrial respiratory chain with heterogeneous clinical manifestations, ranging from isolated myopathy to severe multisystem disease affecting several tissues and organs. Features include hypertrophic cardiomyopathy, hepatomegaly and liver dysfunction, hypotonia, muscle weakness, exercise intolerance, developmental delay, delayed motor development and mental retardation. Some affected individuals manifest a fatal hypertrophic cardiomyopathy resulting in neonatal death. A subset of patients manifest Leigh syndrome. {ECO:0000269 PubMed:10767350, ECO:0000269 PubMed:12928484}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Leigh syndrome (LS) [MIM:256000]: An early-onset progressive neurodegenerative disorder characterized by the presence of focal, bilateral lesions in one or more areas of the central nervous system including the brainstem, thalamus, basal ganglia, cerebellum and spinal cord. Clinical features depend on which areas of the central nervous system are involved and include subacute onset of psychomotor retardation, hypotonia, ataxia, weakness, vision loss, eye movement abnormalities, seizures, and dysphagia. Note=The disease is caused by mutations affecting the gene represented in this entry.

(1) University of Copenhagen DISEASES for COX10 Gene

(4) Novoseek inferred disease relationships for COX10 Gene

Disease -log(P) Hits PubMed IDs
cytochrome c oxidase deficiency 93.3 2
charcot-marie-tooth disease 75.3 1
mitochondrial diseases 73.8 1
myopathy 55.1 1

Relevant External Links for COX10

Genetic Association Database (GAD)
COX10
Human Genome Epidemiology (HuGE) Navigator
COX10
genes like me logo Genes that share disorders with COX10: view

Publications for COX10 Gene

  1. Genomic structure and expression of the human heme A:farnesyltransferase (COX10) gene. (PMID: 9177788) Murakami T. … Lupski J.R. (Genomics 1997) 2 3 4 23
  2. Isolation of a human cDNA for heme A:farnesyltransferase by functional complementation of a yeast cox10 mutant. (PMID: 8078902) Glerum M.D. … Tzagoloff A. (Proc. Natl. Acad. Sci. U.S.A. 1994) 3 4 23
  3. Mutations in COX10 result in a defect in mitochondrial heme A biosynthesis and account for multiple, early-onset clinical phenotypes associated with isolated COX deficiency. (PMID: 12928484) Antonicka H. … Shoubridge E.A. (Hum. Mol. Genet. 2003) 2 3 4
  4. A mutation in the human heme A:farnesyltransferase gene (COX10) causes cytochrome c oxidase deficiency. (PMID: 10767350) Valnot I. … Rotig A. (Hum. Mol. Genet. 2000) 3 4 23
  5. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 49

Products for COX10 Gene

Sources for COX10 Gene

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