 |
 | Services
| |
 |
Aliases & Descriptions for GATA4
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| MGC126629 2 | | OTTHUMP00000116010 2 |
| | | Descriptions |
|---|
| GATA binding protein 4 2 | | GATA-binding factor 4 3 | | GATA-binding protein 4 1, 2 |
|
| | Search outside databases for aliases for GATA4 genePrevious GC identifers: GC08P011628 GC08P011554 GC08P011405 |
Summaries for GATA4(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for GATA4: This gene encodes a member of the GATA family of zinc-finger transcription factors. Members of this family recognize the GATA motif which is present in the promoters of many genes. This protein is thought to regulate genes involved in embryogenesis and in myocardial differentiation and function. Mutations in this gene have been associated with cardiac septal defects. [provided by RefSeq] UniProtKB/Swiss-Prot: GATA4_HUMAN, P43694Function: Transcriptional activator. Binds to the consensus sequence 5'-AGATAG-3'. Acts as a transcriptional activator of ANF in cooperation with NKX2-5 (By similarity)Gene Wiki entry for GATA4 |
Genomic Location for GATA4
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the GATA4 gene 
Entrez Gene cytogenetic band: 8p23.1-p22 Ensembl cytogenetic band: 8p23.1 HGNC cytogenetic band: 8p23.1-p22GATA4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 8 GeneLoc Exon Structure GeneLoc location for GC08P011599:
(about GC identifiers)
Start:
|
11,599,162 bp from pter |
End:
|
11,654,918 bp from pter |
Size:
|
55,757 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000008.9 NT_077531.3
| Proteins for GATA4
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: GATA4_HUMAN, P43694 (See
protein sequence)Recommended Name: Transcription factor GATA-4 Size: 442 amino acids; 44565 Da
Subunit: Interacts with ZNF260 (By similarity). Interacts with the homeobox domain of NKX2-5 through its C-terminal zinc finger. Also interacts with JARID2 which represses its ability to activate transcription of ANF. Interacts with NFATC4 (By similarity)
Subcellular location: Nucleus
Secondary accessions: Q3MJ45Post-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002043.2
ENSEMBL proteins: ENSP00000334458 ENSP00000371772 ENSP00000259090
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: GATA4 
1 Gene Ontology (GO) cellular component term (links to tree view): About this table
Antibodies for GATA4: Assays for GATA4: | Protein
Domains/ Families for GATA4(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P43694
ProtoNet protein and cluster: P43694 2 Blocks protein families: IPB000679 Zn-finger IPB008013 GATA-type transcription activator
UniProtKB/Swiss-Prot: GATA4_HUMAN, P43694Similarity: Contains 2 GATA-type zinc fingers | Gene Function for GATA4
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002052
Applied Biosystems Silencer® siRNAs for GATA4
Sigma-Aldrich siRNA for GATA4  Sigma-Aldrich shRNA for GATA4  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002052                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002052                                  untagged cDNA clone in CMV expression vector: NM_002052 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002052
UniProtKB/Swiss-Prot: GATA4_HUMAN, P43694Function: Transcriptional activator. Binds to the consensus sequence 5'-AGATAG-3'. Acts as a transcriptional activator of ANF in cooperation with NKX2-5 (By similarity)Genatlas biochemistry entry for GATA4:transcription factor,GATA sequence binding protein,involved in lineage determination,expressed in heart,gut,primitive endoderm,gonads,maybe involvedd in heart defects in patients with a deletion del8 (p213)15/16 MGI mutant phenotypes (inferred from 13 alleles ) (MGI details for Gata4) (see all 16
):
5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003700 | transcription factor activity |
IEA | -- | | GO:0003704 | specific RNA polymerase II transcription factor activity |
ISS | -- | | GO:0008134 | transcription factor binding |
IPI | 9858576 | | GO:0008270 | zinc ion binding |
IEA | -- | | GO:0016563 | transcription activator activity |
IEA | -- | About this table | Pathways & Interactions for GATA4
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/6 Sigma-Aldrich "Your Favorite Gene" Pathways for GATA4 (Your Favorite Gene powered by Ingenuity) (see all 6
) 
Gene Network CentralTM Interacting Genes and Proteins Network for GATA4 
5/136 Interacting proteins for GATA4 (P436942 ENSP000003344583) via UniProtKB, MINT, and/or STRING (see all 136
)About this table
5/8 Gene Ontology (GO) biological process terms (links to tree view) (see all 8
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0001947 | heart looping |
ISS | -- | | GO:0006366 | transcription from RNA polymerase II promoter |
ISS | 12845333 | | GO:0007267 | cell-cell signaling |
ISS | -- | | GO:0010575 | positive regulation vascular endothelial growth factor production |
ISS | -- | | GO:0035054 | embryonic heart tube anterior/posterior pattern formation |
ISS | -- | About this table
|
Drugs & Compounds for GATA4(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for GATA4 10/12 Novoseek chemical compound relationships for GATA4 gene (see all 12
)
About this table
|
Transcripts for GATA4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002052
Sigma-Aldrich siRNA for GATA4  Sigma-Aldrich shRNA for GATA4  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002052 REFSEQ mRNAs for GATA4 gene: NM_002052.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002052               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002052                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002052                                  untagged cDNA clone in CMV expression vector: NM_002052  Additional cDNA sequence: AF180736.1 AF318320.1 AK097060.1 AY740706.1 BC033672.1 BC068079.1 BC101580.1 BC105108.1 BC143434.1 BC143479.1 CR609988.1 D78260.1 L34357.1 4 DOTS entries: DT.97840387 DT.452800 DT.306804 DT.95371365 24/105 AceView cDNA sequences (see all 105
):AW087784 BE502232 BQ685606 BF513628 BF058124 BC033672 AI187315 CA776901 CR609988 NM_002052 AI809988 BE672057 AI218830 BM931880 AI218020 BV185661 AL572860 R01769 BF115597 BF194806 BF196317 BC068079 BI826615 BM768320
highest scoring ESTs for GATA4:L34357 AA398865 AA416792 AA431347 AA431631 AA435865 AA527367 AA812789 AF180736 AI024047 Unigene Cluster for GATA4: GATA binding protein 4 Hs.243987 [show with all ESTs]Unigene Representative Sequence: NM_002052
GeneLoc Exon Structure
3 Ensembl transcripts including schematic representations: ENST00000335135
ENST00000382335
ENST00000259090
|
Expression for GATA4
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| GATA4 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for GATA4
1 / 2 / 3 5 probe-sets matching GATA4 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GAGACTCCTT
SOURCE GeneReport for Unigene cluster: Hs.243987
Expression variation in blood from EXPOLDB for GATA4 |
Orthologs for GATA4
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for GATA4 gene from 5/13 species (see all 13
)
About this table Species with no ortholog for GATA4
ENSEMBL Gene Tree for GATA4 | Paralogs for GATA4(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for GATA4 gene
- GATA32 GATA22 GATA12
|
SNPs/Variants for GATA4(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for GATA4 (up to first 250kb)
|
Disorders & Mutations for GATA4
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600576 disorders: 607941 UniProtKB/Swiss-Prot: GATA4_HUMAN, P43694
Defects in GATA4 are the cause of atrial septal defect type 2 (ASD2) [MIM:607941]. ASD2 is a congenital heart malformation characterized by incomplete closure of the wall between the atria resulting in blood flow from the left to the right atria. ASD2 patients show other heart abnormalities including ventricular and atrioventricular septal defects, pulmonary valve thickening or insufficiency of the cardiac valves. ASD2 is not associated with defects in the cardiac conduction system or non-cardiac abnormalities10/34 Novoseek disease relationships for GATA4 gene (see all 34
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| cardiac hypertrophy |
60.51 |
13 |
15249177 (2), 18005871 (1), 18036354 (1), 14761664 (1) (see all 10) |
| septal defect |
55.41 |
11 |
12845333 (4), 18055909 (3), 17352393 (1), 17643447 (1) (see all 5) |
| heart defects congenital |
53.11 |
9 |
16604480 (2), 16077733 (1), 18305343 (1), 10096597 (1) (see all 7) |
| adrenal tumor |
52.43 |
7 |
15256532 (2), 14666170 (2), 17207921 (1), 10449810 (1) (see all 5) |
| congenital heart disease |
51.93 |
19 |
10096597 (6), 17592645 (2), 18672102 (2), 15249177 (1) (see all 11) |
| atrial septal defects |
49.82 |
11 |
18305343 (2), 15810002 (2), 14557051 (2), 17053787 (1) (see all 7) |
| hypertrophy |
46.72 |
8 |
11739382 (2), 15220332 (1), 15574430 (1), 18830417 (1) (see all 7) |
| atrioventricular septal defect |
46.26 |
1 |
17592645 (1) |
| cardiomyopathy |
39.94 |
3 |
10677255 (1), 17643447 (1), 12231398 (1) |
| ventricular septal defects |
37.71 |
2 |
19302747 (1) |
About this table
Human Gene Mutation Database: GATA4 Human Genome Epidemiology Navigator: GATA4 (9 documents)
|
Medical News for GATA4(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for GATA4 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/293 PubMed articles for GATA4 gene (see all 293
):- GATA4 mutations cause human congenital heart defects and reveal an interaction with TBX5. (PubMed id 12845333)1, 3, 4 Garg V.... Srivastava D. (2003)
- Assignment of the transcription factor GATA4 gene to human chromosome 8 and mouse chromosome 14: Gata4 is a candidate gene for Ds (disorganization). (PubMed id 7665171)1, 2, 3 White R.A....Wilson D.B. (1995)
- Phenotypes with GATA4 or NKX2.5 mutations in familial atrial septal defect. (PubMed id 15810002)1, 3, 4 Hirayama-Yamada K....Matsuoka R. (2005)
- Identification of a GATA motif in the cardiac alpha-myosin heavy- chain-encoding gene and isolation of a human GATA-4 cDNA. (PubMed id 7721094)1, 3, 4 Huang W.Y.... Liew C.C. (1995)
- A negative feedback regulatory loop associates the tyrosine kinase receptor ERBB2 and the transcription factor GATA4 in breast cancer cells. (PubMed id 19276186)1, 3 Hua G....Imbert J. (2009)
- GATA-4 regulates Bcl-2 expression in ovarian granulosa cell tumors. (PubMed id 18653721)1, 3 Kyronlahti A....Anttonen M. (2008)
- Screening and biochemical analysis of GATA4 sequence variations identified in patients with congenital heart disease. (PubMed id 17352393)1, 3 Schluterman M.K....Garg V. (2007)
- Evaluation of GATA-4 and GATA-5 methylation profiles in human pancreatic cancers indicate promoter methylation patterns distinct from other human tumor types. (PubMed id 17912029)1, 3 Fu B....Iacobuzio-Donahue C.A. (2007)
- Mutations in the 3'-untranslated region of GATA4 as molecular hotspots for congenital heart disease (CHD). (PubMed id 17592645)1, 3 Reamon-Buettner S.M....Borlak J. (2007)
- Spectrum of heart disease associated with murine and human GATA4 mutation. (PubMed id 17643447)1, 3 Rajagopal S.K....Pu W.T. (2007)
|
Search for GATA4
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing GATA4
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing GATA4
(According to HUGE)
About This Section
| -- |
Specialized Databases showing GATA4(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| Name | Description |
| GeneReviews | http://www.genetests.org/query?gene=GATA4 |
|
| | | About This Section
| --
| Services for GATA4(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for GATA4:

 | |
 | | | | |
|
 |  |  |
| | | | Search Tocris compounds for GATA4 |
|
 |
 | | | |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|