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Aliases & Descriptions for DICER1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases DCR1 2 DICER 3 Dicer 1 , 2 EC 3.1.26.- 3 HERNA 1 , 2 , 3 , 5 K12H4.8-LIKE 1 , 2 KIAA0928 1 , 2 , 3 , 5 dicer1 2 helicase-moi 2
Descriptions Dicer1, Dcr-1 homolog 2 Dicer1, Dcr-1 homolog (Drosophila) 1 Helicase MOI 3 Helicase with RNase motif 2 , 3 dicer 1, double-stranded RNA-specific endoribonuclease 2 dicer 1, ribonuclease type III 2
Search outside databases for aliases for DICER1 genePrevious GC identifers: GC14M093065 GC14M089372 GC14M093542
Summaries for DICER1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for DICER1 : This gene encodes a protein possessing an RNA helicase motif containing a DEXH box in its aminoterminus and an RNA motif in the carboxy terminus. The encoded protein functions as a ribonucleaseand is required by the RNA interference and small temporal RNA (stRNA) pathways to produce theactive small RNA component that represses gene expression. Two transcript variants encoding thesame protein have been identified for this gene. [provided by RefSeq] UniProtKB/Swiss-Prot: DICER_HUMAN, Q9UPY3 Function : Required for formation of the RNA induced silencing complex (RISC). Component of the RISCloading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which iscomposed of DICER1, EIF2C2/AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are requiredto process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto EIF2C2/AGO2.EIF2C2/AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociatefrom DICER1 and TARBP2. Also cleaves double-stranded RNA to produce short interfering RNAs(siRNAs) which target the selective destruction of complementary RNAs
Gene Wiki entry for DICER1
Genomic Location for DICER1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the DICER1 gene Entrez Gene cytogenetic band: 14q32.13 Ensembl cytogenetic band: 14q32.13 HGNC cytogenetic band: 14q32.2 DICER1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14M094622:
(about GC identifiers )
Start:
94,622,319 bp from pter
End:
94,693,512 bp from pter
Size:
71,194 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000014.7 NT_026437.11 Proteins for DICER1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: DICER_HUMAN, Q9UPY3 (See
protein sequence )Recommended Name: Endoribonuclease Dicer Size : 1912 amino acids; 217628 Da
Cofactor : Binds 2 magnesium or manganese ions per subunit (Probable)
Subunit : Component of the RISC loading complex (RLC), or micro-RNA (miRNA) loading complex (miRLC),which is composed of DICER1, EIF2C2/AGO2 and TARBP2. Note that the trimeric RLC/miRLC is alsoreferred to as RISC. Interacts with DHX9, EIF2C1, PIWIL1 and PRKRA. Associates with the 60Sribosome
Subcellular location : Cytoplasm
PDB structures from and Proteopedia : 2EB1 (3D)
 
Secondary accessions : O95943 Q9UQ02
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_085124.2 NP_803187.1 ENSEMBL proteins: ENSP00000376783 ENSP00000343745 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for DICER1: Assays for DICER1:
Protein
Domains/ Families for DICER1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9UPY3 ProtoNet protein and cluster: Q9UPY3
4 Blocks protein families : IPB000999 Ribonuclease III family IPB001159 Double-stranded RNA binding (DsRBD) domain IPB003100 Argonaute and Dicer protein IPB005034 Protein of unknown function DUF283 UniProtKB/Swiss-Prot: DICER_HUMAN, Q9UPY3 Similarity : Belongs to the helicase family. Dicer subfamilySimilarity : Contains 1 Dicer dsRNA-binding fold domainSimilarity : Contains 1 DRBM (double-stranded RNA-binding) domainSimilarity : Contains 1 helicase ATP-binding domainSimilarity : Contains 1 helicase C-terminal domainSimilarity : Contains 1 PAZ domainSimilarity : Contains 2 RNase III domains
Gene Function for DICER1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
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RNAi Products ,
Clones , and
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OriGene , and/or
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_177438 Applied Biosystems Silencer ® siRNAs for DICER1 Sigma-Aldrich siRNA for DICER1 Sigma-Aldrich shRNA Panels and shRNA for DICER1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_030621                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_030621                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_030621  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_177438 UniProtKB/Swiss-Prot: DICER_HUMAN, Q9UPY3 Function : Required for formation of the RNA induced silencing complex (RISC). Component of the RISCloading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which iscomposed of DICER1, EIF2C2/AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are requiredto process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto EIF2C2/AGO2.EIF2C2/AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociatefrom DICER1 and TARBP2. Also cleaves double-stranded RNA to produce short interfering RNAs(siRNAs) which target the selective destruction of complementary RNAs Enzyme Number (IUBMB): EC 3.1.26.-
15/19 MGI mutant phenotypes (inferred from 13 alleles ) (MGI details for Dicer1) (see all 19
):5/9 Gene Ontology (GO) molecular function terms (links to tree view) (see all 9
):
About this table
Pathways & Interactions for DICER1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for DICER1 5/342 Interacting proteins for DICER1 (Q9UPY3 1 , 2 ENSP00000343745 3 ) via UniProtKB, MINT, and/or STRING (see all 342
)About this table 5/10 Gene Ontology (GO) biological process terms (links to tree view) (see all 10
):
About this table
Drugs & Compounds for DICER1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for DICER1
Transcripts for DICER1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
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shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_177438 Sigma-Aldrich siRNA for DICER1 Sigma-Aldrich shRNA Panels and shRNA for DICER1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_030621 NM_177438
REFSEQ mRNAs for DICER1 gene (2 alternative transcripts): NM_030621.3 NM_177438.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_030621 NM_177438
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_030621                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_030621                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_030621  
Additional cDNA sequence: AB023145.2 AB028449.1 AF007142.1 AJ132261.2 AK001041.1 AK001827.1 AK002007.1 AK091094.1 AK091513.1 AL122105.1 AL832389.1 AY845867.1 AY845868.1 AY929254.1 AY929255.1 AY929256.1 BC046934.1 BC068591.1 BC150287.1
14 DOTS entries : DT.317718 DT.95252847 DT.100816980 DT.97763171 DT.91823640 DT.95295120 DT.95266523 DT.95182023 DT.97823900 DT.100816977 DT.120779731 DT.120779673 DT.40293064 DT.99951130
24/320 AceView cDNA sequences (see all 320
):CA310117 AI249382 BQ188480 AW339969 BI712506 AA843975 BQ216141 AU119024 AA296802 AL122105 BC046934 BM671458 AI268132 AA976871 AI969443 BU507638 BU147169 AA987461 BQ433107 BM692875 AA639968 AW193662 AL832389 BQ723760
highest scoring ESTs for DICER1 :AB023145 AB028449 BC046934 BQ216141 AA044960 AA057340 AA069444 AA069472 AA091027 AA093761
Unigene Cluster for DICER1: Dicer 1, ribonuclease type III Hs.87889 [show with all ESTs ] Unigene Representative Sequence: NM_177438 GeneLoc Exon Structure 5/12 Alternative Splicing Database (ASD) splice patterns (SP) for DICER1 (see all 12
) ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15a · 15b ^ 16 ^ 17a · 17b ^ 18 ^ 19a · SP1 :               -                                       SP2 :     -   -   -   -   -   -                                       SP3 :             -   -                                       SP4 :                                                     SP5 :                                                    
ExUns: 19b ^ 20 ^ 21 ^ 22 ^ 23a · 23b ^ 24 ^ 25 ^ 26a · 26b · 26c ^ 27 ^ 28a · 28b ^ 29 ^ 30a · 30b ^ 31a · 31b ^ 32 SP1 : -                           -     -       -     SP2 : -                           -     -       -     SP3 : -                           -     -       -     SP4 :                 -           -     -       -     SP5 :                                        
About this scheme ECgene alternative splicing isoforms for DICER1 2 Ensembl transcripts including schematic representations : ENST00000393063
ENST00000343455
Expression for DICER1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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DICER1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for DICER1 1 / 2 / 3
10 probe-sets matching DICER1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTGCAGAAATSOURCE GeneReport for Unigene cluster: Hs.87889 Expression variation in blood from EXPOLDB for DICER1
Orthologs for DICER1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for DICER1 gene from 5/14 species (see all 14
)
About this table Species with no ortholog for DICER1 ENSEMBL Gene Tree for DICER1 Paralogs for DICER1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for DICER1 gene IFIH1 2 DHX58 2 DDX58 2
SNPs/Variants for DICER1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for DICER1 (up to first 250kb)
Disorders & Mutations for DICER1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 606241 Human Genome Epidemiology Navigator: DICER1 (2 documents)
Medical News for DICER1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for DICER1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/108 PubMed articles for DICER1 gene (see all 108
): Molecular cloning and characterization of a novel human gene (HERNA) which encodes a putative RNA-helicase. (PubMed id 10786632) 2, 3, 4 Matsuda S....Hamaguchi M. (2000) Interaction of 5-lipoxygenase with cellular proteins. (PubMed id 10051563) 2, 3, 4 Provost P.... Radmark O. (1999) Characterization of the interactions between mammalian PAZ PIWI domain proteins and Dicer. (PubMed id 14749716) 1, 3, 4 Tahbaz N....Hobman T.C. (2004) A TARBP2 mutation in human cancer impairs microRNA processing and DICER1 function. (PubMed id 19219043) 3, 4 Melo S.A.... Esteller M. (2009) In vitro reconstitution of the human RISC-loading complex. (PubMed id 18178619) 3, 4 MacRae I.J....Doudna J.A. (2008) Human TRBP and PACT directly interact with each other and associate with dicer to facilitate the production of small interfering RNA. (PubMed id 17452327) 3, 4 Kok K.H....Jin D.Y. (2007) Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455) 3, 4 Rush J.... Comb M.J. (2005) TRBP, a regulator of cellular PKR and HIV-1 virus expression, interacts with Dicer and functions in RNA silencing. (PubMed id 16142218) 3, 4 Haase A.D....Filipowicz W. (2005) Single processing center models for human Dicer and bacterial RNase III. (PubMed id 15242644) 3, 4 Zhang H....Filipowicz W. (2004) Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954) 3, 4 Nakajima D.... Nagase T. (2002)
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Genome Databases showing DICER1
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing DICER1
(According to HUGE )
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Specialized Databases showing DICER1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Name Description
Protein Spotlight http://www.expasy.org/spotlight/back_issues/sptlt087.shtml
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-- Services for DICER1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for DICER1:
Antibodies & Assays for DICER1   (Dicer)
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009