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ZYG11A Gene

protein-coding   GIFtS: 41
GCID: GC01P053308

Zyg-11 Family Member A, Cell Cycle Regulator

(Previous name: zyg-11 homolog A (C. elegans))
  Search for ZYG11A
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Zyg-11 Family Member A, Cell Cycle Regulator1 2
ZYG112 3
Zyg-11 Homolog A (C. Elegans)1
Protein Zyg-11 Homolog A2
Zyg-11 Homolog A2
ZYG-11A Early Embryogenesis Protein2

External Ids:    HGNC: 320581   Entrez Gene: 4405902   Ensembl: ENSG000002039957   UniProtKB: Q6WRX33   

Export aliases for ZYG11A gene to outside databases

Previous GC identifers: GC01P053022 GC01P053080 GC01P051424


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for ZYG11A Gene:
ZYG11A (zyg-11 family member A, cell cycle regulator) is a protein-coding gene. An important paralog of this gene is ZYG11B.

UniProtKB/Swiss-Prot: ZY11A_HUMAN, Q6WRX3
Function: Probably acts as target recruitment subunit in an E3 ubiquitin ligase complex ZYGA-CUL2-elongin BC (By
similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000001.11  NT_032977.10  NC_018912.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the ZYG11A gene promoter:
         Nkx3-1   Nkx3-1 v4   HTF   Nkx2-5   Nkx3-1 v1   Evi-1   Nkx3-1 v2   POU2F1   POU2F1a   Nkx3-1 v3   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for ZYG11A

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat ZYG11A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1p32.3   Ensembl cytogenetic band:  1p32.3   HGNC cytogenetic band: 1p32.3

ZYG11A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZYG11A gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P053308:  view genomic region     (about GC identifiers)

Start:
53,308,183 bp from pter      End:
53,360,670 bp from pter
Size:
52,488 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: ZY11A_HUMAN, Q6WRX3 (See protein sequence)
Recommended Name: Protein zyg-11 homolog A  
Size: 759 amino acids; 85808 Da
Secondary accessions: A6NCK5
Alternative splicing: 2 isoforms:  Q6WRX3-1   Q6WRX3-2   

Explore the universe of human proteins at neXtProt for ZYG11A: NX_Q6WRX3

Explore proteomics data for ZYG11A at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See ZYG11A Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001004339.2  
    ENSEMBL proteins: 
     ENSP00000360587   ENSP00000360583  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    ZYG11: ZYG11 cell cycle regulator family

    2 InterPro protein domains:
     IPR011989 ARM-like
     IPR016024 ARM-type_fold

    Graphical View of Domain Structure for InterPro Entry Q6WRX3

    ProtoNet protein and cluster: Q6WRX3

    UniProtKB/Swiss-Prot: ZY11A_HUMAN, Q6WRX3
    Similarity: Belongs to the zyg-11 family
    Similarity: Contains 3 LRR (leucine-rich) repeats


    ZYG11A for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: ZY11A_HUMAN, Q6WRX3
    Function: Probably acts as target recruitment subunit in an E3 ubiquitin ligase complex ZYGA-CUL2-elongin BC (By
    similarity)

         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005488binding ----
         
    ZYG11A for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for ZYG11A:
     Elongated cells 

    Animal Models:
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol3
    cytoskeleton1
    extracellular1
    mitochondrion1
    nucleus1
    peroxisome1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for ZYG11A
    Interactions:

        Search GeneGlobe Interaction Network for ZYG11A

    STRING Interaction Network Preview (showing 5 interactants - click image to see 6)

    Selected Interacting proteins for ZYG11A (ENSP000003605834) via UniProtKB, MINT, STRING, and/or I2D (see all 6)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    COL11A1ENSP000003511634STRING: ENSP00000351163
    SCP2ENSP000003605694STRING: ENSP00000360569
    UBIAD1ENSP000003660064STRING: ENSP00000366006
    HSPB1ENSP000002485534STRING: ENSP00000248553
    CUL1ENSP000003268044STRING: ENSP00000326804
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for ZYG11A (ZY11A)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for ZYG11A gene: 
    NM_001004339.2  

    Unigene Cluster for ZYG11A:

    Zyg-11 family member A, cell cycle regulator
    Hs.658458  [show with all ESTs]
    Unigene Representative Sequence: NM_001004339
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000371532(uc001cul.2) ENST00000371528(uc001cuk.2)
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      QuantiTect SYBR Green Assays in human, mouse, rat ZYG11A
      QuantiFast Probe-based Assays in human, mouse, rat ZYG11A

    Additional mRNA sequence: 

    AY271826.1 BC119789.1 BC119815.1 

    2 DOTS entries:

    DT.40268250  DT.102837165 

    4 AceView cDNA sequences:

    BP872266 AY271826 NM_001004339 AA176176 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    ZYG11A expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: ATTCCAAAAG
    ZYG11A Expression
    About this image


    ZYG11A expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 3) fully expand
     
     Skeletal Muscle (Muscoskeletal System)    fully expand to see all 2 entries
             Mononuclear Myocytes Hyoid Arch Muscles
     
     Testis (Reproductive System)
             XY Germ Cells Testis Cord
     
     Gonad
             XY Germ Cells Testis Cord
    ZYG11A Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    ZYG11A Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.658458
        Custom PCR Arrays for ZYG11A
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZYG11A

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for ZYG11A gene from Selected species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zyg11a1 , 5 zyg-11 homolog A (C. elegans)5
    zyg-11 family member A, cell cycle regulator1
    79.95(n)1
    74.29(a)1
      4 (50.31 cM)5
    2305901  NM_001167936.11  NP_001161408.11 
     1081819345 
    lizard
    (Anolis carolinensis)
    Reptilia ZYG11A6
    zyg-11 family member A, cell cycle regulator
    55(a)
    1 ↔ 1
    4(114823057-114840360)
    zebrafish
    (Danio rerio)
    Actinopterygii zyg116
    si:ch1073-82l19.16
    si:ch1073-82l19.1
    51(a)
    42(a)
    many ↔ many
    many ↔ many
    20(16214145-16242343) ENSDARG00000007737
    2(3506205-3536712) ENSDARG00000045828
    worm
    (Caenorhabditis elegans)
    Secernentea zyg-116
    Protein ZYG-11 (zyg-11) mRNA, complete cds
    20(a)
    1 → many
    II(8017680-8020759) WBGene00006996


    ENSEMBL Gene Tree for ZYG11A (if available)
    TreeFam Gene Tree for ZYG11A (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for ZYG11A gene
    ZYG11B2  ZER12  
    1 SIMAP similar gene for ZYG11A using alignment to 1 protein entry:     ZY11A_HUMAN:
    ZYG11B

    ZYG11A for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for ZYG11A
    PGOHUM00000236293


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for ZYG11A (see all 1146)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1873166981,2
    --53306302(+) TAAATA/TAAATA 1 -- us2k10--------
    rs1399337761,2
    --53306601(+) CTTATA/GAGAAC 1 -- us2k10--------
    rs761370981,2
    F--53306622(+) AGGTTC/TTATAT 1 -- us2k11Minor allele frequency- T:0.01WA 118
    rs1914203241,2
    --53306776(+) CCCAAA/GAATTC 1 -- us2k10--------
    rs1838970621,2
    --53306858(+) TTTCAA/TTAAAT 1 -- us2k10--------
    rs1154872701,2
    C,F--53306865(+) AAATCC/ACTTCA 1 -- us2k11Minor allele frequency- A:0.03NA 120
    rs1878341531,2
    --53306885(+) TGTTTG/TTGCGT 1 -- us2k10--------
    rs782546741,2
    C--53306952(+) AAAGCA/GTATTG 1 -- us2k10--------
    rs1121673441,2
    C,F--53306968(+) GGCACG/AGTGGC 1 -- us2k14Minor allele frequency- A:0.12WA CSA 124
    rs1500053031,2
    --53306975(+) TGGCTC/TACGCC 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for ZYG11A (53308183 - 53360670 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 5 variations for ZYG11A:    About this table    
    Variant IDTypeSubtypePubMed ID
    esv2668074CNV Deletion23128226
    nsv829859CNV Loss17160897
    esv24261CNV Loss19812545
    nsv866CNV Loss18451855
    nsv871800CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for ZYG11A gene integrated from 10 sources:
    (articles sorted by number of sources associating them with ZYG11A)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (amp 2011)
    2. Global identification of modular cullin-RING ligase substrates. (PubMed id 21963094)1 Emanuele M.J....Elledge S.J. (Cell 2011)
    3. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)2 Gregory S.G.... Bentley D.R. (Nature 2006)
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    5. (PubMed id )2 

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 440590 HGNC: 32058 AceView: LOC440590 Ensembl:ENSG00000203995 euGenes: HUgn440590
    ECgene: ZYG11A H-InvDB: ZYG11A

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for ZYG11A Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZYG11A gene:
    Search GeneIP for patents involving ZYG11A

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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