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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZUFSP Gene

protein-coding   GIFtS: 46
GCID: GC06M116956

Zinc Finger With UFM1-Specific Peptidase Domain

(Previous name: chromosome 6 open reading frame 113)
(Previous symbol: C6orf113)
  Search for ZUFSP
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Zinc Finger With UFM1-Specific Peptidase Domain1 2
C6orf1131 2 3
Chromosome 6 Open Reading Frame 1131
dJ412I7.32
Zinc Finger With UFM1-Specific Peptidase Domain Protein2

External Ids:    HGNC: 212241   Entrez Gene: 2213022   Ensembl: ENSG000001539757   UniProtKB: Q96AP43   

Export aliases for ZUFSP gene to outside databases

Previous GC identifers: GC06M117064 GC06M114536


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZUFSP Gene: 
ZUFSP (zinc finger with UFM1-specific peptidase domain) is a protein-coding gene. GO annotations related to this gene include zinc ion binding.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000006.11  NC_018917.2  NT_025741.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZUFSP gene promoter:
         Nkx3-1   ISGF-3   AML1a   p53   FOXD3   Nkx3-1 v1   Nkx3-1 v2   HFH-1   FOXJ2 (long isoform)   FOXJ2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidZUFSP promoter sequence
   Search SABiosciences Chromatin IP Primers for ZUFSP

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZUFSP


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6q22.1   Ensembl cytogenetic band:  6q22.1   HGNC cytogenetic band: 6q22.31

ZUFSP Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZUFSP gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M116956:  view genomic region     (about GC identifiers)

Start:
116,956,781 bp from pter      End:
116,989,973 bp from pter
Size:
33,193 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: ZUFSP_HUMAN, Q96AP4 (See protein sequence)
Recommended Name: Zinc finger with UFM1-specific peptidase domain protein  
Size: 578 amino acids; 65959 Da
Caution: Although related to the Ufm1-specific proteases, it lacks the conserved His active site, suggesting that
it is probably inactive
Sequence caution: Sequence=CAI20499.1; Type=Erroneous gene model prediction;
Secondary accessions: Q5TD92 Q6PJH7 Q96NV6
Alternative splicing: 2 isoforms:  Q96AP4-1   Q96AP4-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ZUFSP: NX_Q96AP4

Explore proteomics data for ZUFSP at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q96AP4

  • ZUFSP Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZUFSP Protein Expression
    REFSEQ proteins: NP_659499.2  
    ENSEMBL proteins: 
     ENSP00000357565   ENSP00000357562  

    Human Recombinant Protein Products for ZUFSP: 
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    Novus Biologicals ZUFSP Lysates
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    Cloud-Clone Corp. Proteins for ZUFSP 


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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    ZNF: Zinc fingers, C2H2-type

    3 InterPro protein domains:
     IPR015880 Znf_C2H2-like
     IPR012462 Peptidase_C78_UfSP1/2
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q96AP4

    ProtoNet protein and cluster: Q96AP4

    1 Blocks protein domain: IPB012462 Protein of unknown function DUF1671

    UniProtKB/Swiss-Prot: ZUFSP_HUMAN, Q96AP4
    Similarity: Contains 3 C2H2-type zinc fingers


    ZUFSP for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008270zinc ion binding ----
    GO:0046872metal ion binding IEA--
         
    ZUFSP for ontologies           About GeneDecksing


    Animal Models:
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    miRNA
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    Inhib. RNA
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    GenScript: all cDNA clones in your preferred vector: ZUFSP (NM_145062)
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZUFSP


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZUFSP

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    2 Interacting proteins for ZUFSP (Q96AP42, 3 ENSP000003575654) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SHCBP1Q8NEM22, 3, ENSP000003064734MINT-66550 I2D: score=3 STRING: ENSP00000306473
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZUFSP

    Search CenterWatch for drugs/clinical trials and news about ZUFSP

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for ZUFSP gene: 
    NM_145062.2  

    Unigene Cluster for ZUFSP:

    Zinc finger with UFM1-specific peptidase domain
    Hs.29857  [show with all ESTs]
    Unigene Representative Sequence: BX537872
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000485498 ENST00000368576(uc003pxf.2 uc010kef.2) ENST00000368573
    ENST00000471919
    miRNA
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    Search QIAGEN for miScript miRNA Assays for microRNAs that regulate ZUFSP
    SwitchGear 3'UTR luciferase reporter plasmidZUFSP 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene RNAi products in human, mouse, rat for ZUFSP
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ZUFSP
    Clone
    Products:
         
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    OriGene ORF clones in mouse, rat for ZUFSP
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    GenScript: all cDNA clones in your preferred vector: ZUFSP (NM_145062)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for ZUFSP
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZUFSP
    Sirion Biotech Customized lentivirus for stable overexpression of ZUFSP 
                         Customized lentivirus expression plasmids for stable overexpression of ZUFSP 
    Primer
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    OriGene qPCR primer pairs and template standards for ZUFSP
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZUFSP
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZUFSP

    Additional mRNA sequence: 

    AK054582.1 AK307523.1 BC015420.2 BC016879.1 BX537872.1 

    8 DOTS entries:

    DT.410943  DT.100748697  DT.100748698  DT.92414109  DT.91856803  DT.102822368  DT.121386468  DT.121386455 

    24/85 AceView cDNA sequences (see all 85):

    CR602085 BM932088 BU430502 BX537872 BU156659 BC016879 BP349315 BM784058 
    BU507590 CD365600 BI712472 AW104433 BP335771 BU172921 AW090802 BM710960 
    BM977499 CB528391 BI915850 AW104872 AL538804 AW236478 BF981614 AA678611 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for ZUFSP    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
    SP1:                                                            
    SP2:                    -                                       


    ECgene alternative splicing isoforms for ZUFSP

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZUFSP expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TGAAGTATAT
    ZUFSP Expression
    About this image


    See ZUFSP Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZUFSP

    SOURCE GeneReport for Unigene cluster: Hs.29857
        SABiosciences Custom PCR Arrays for ZUFSP
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    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat ZUFSP
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZUFSP

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ZUFSP gene from 6/13 species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Zufsp1 , 5 zinc finger with UFM1-specific peptidase domain1, 5 86.65(n)1
    82.38(a)1
      10 (18.85 cM)5
    725801  NM_028287.21  NP_082563.11 
     339269365 
    chicken
    (Gallus gallus)
    Aves ZUFSP1 zinc finger with UFM1-specific peptidase domain 71.78(n)
    72.18(a)
      421739  XM_419771.3  XP_419771.1 
    lizard
    (Anolis carolinensis)
    Reptilia ZUFSP6
    zinc finger with UFM1-specific peptidase domain
    70(a)
    1 ↔ 1
    1(185974300-185977301)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.197812 Xenopus laevis transcribed sequence with weak similarity more 73.06(n)    BQ398904.1 
    zebrafish
    (Danio rerio)
    Actinopterygii 570649222   -- 70(n)    57064922 
    mosquito
    (Anopheles gambiae)
    Insecta AgaP_AGAP0096081 AGAP009608-PA 44.07(n)
    37.66(a)
      1278982  XM_318637.4  XP_318637.4 


    ENSEMBL Gene Tree for ZUFSP (if available)
    TreeFam Gene Tree for ZUFSP (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/721 SNPs in ZUFSP are shown (see all 721)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 6 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs132147591,2
    C--116956281(+) TGGCCA/GGGATT 1 -- int10--------
    rs22956911,2
    C,F,H--116956404(+) AATCAA/GTGCAA 1 -- int18Minor allele frequency- G:0.05NS EA NA WA 774
    rs1889996211,2
    --116956474(+) TTACTA/GTATAT 1 -- int10--------
    rs22956921,2
    C,F,A,H--116956489(+) TCTAAC/TGGAAG 1 -- int127Minor allele frequency- T:0.39EA NS NA WA CSA 2950
    rs1485471141,2
    C--116956566(+) AAGAT-/AT/TA 
            
    TTTTC
    1 -- int10--------
    rs770042161,2
    C,F--116956575(+) TCTTGG/AGCAAA 1 -- int11Minor allele frequency- A:0.05NA 120
    rs1808849561,2
    --116956595(+) TCTCAA/GGGCTT 1 -- int10--------
    rs1441976111,2
    --116956630(+) TAATAC/GTACTT 1 -- int10--------
    rs1855889271,2
    --116956695(+) AGTACC/TTAACA 1 -- int10--------
    rs1887332801,2
    --116956748(+) AAACTA/GGTTTC 1 -- int10--------

    HapMap Linkage Disequilibrium report for ZUFSP (116956781 - 116989973 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 3 variations for ZUFSP:    About this table     
    Variant IDTypeSubtypePubMed ID
    nsv5448CNV Insertion18451855
    nsv523972CNV Gain19592680
    nsv830783CNV Gain17160897

    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing ZUFSP
    DNA2.0 Custom Variant and Variant Library Synthesis for ZUFSP

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZUFSP gene, integrated from 9 sources (see all 17):
    (articles sorted by number of sources associating them with ZUFSP)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (2003)
    4. Identifying protein partners of CLN8, an ER-resident p rotein involved in neuronal ceroid lipofuscinosis. (PubMed id 23142642)1 Passantino R....Guarneri P. (2013)
    5. A Y2H-seq approach defines the human protein methyltransferase interactome. (PubMed id 23455924)1 Weimann M.... Stelzl U. (2013)
    6. Proteome-wide identification of ubiquitylation sites b y conjugation of engineered lysine-less ubiquitin. (PubMed id 22053931)1 Oshikawa K....Nakayama K.I. (2012)
    7. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (2012)
    8. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    9. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    10. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 221302 HGNC: 21224 AceView: C6orf113 Ensembl:ENSG00000153975 euGenes: HUgn221302
    ECgene: ZUFSP H-InvDB: ZUFSP

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZUFSP Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for ZUFSP gene:
    Search GeneIP for patents involving ZUFSP

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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     Proteins for ZUFSP
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     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat ZUFSP
     inGenious Targeting Laboratory - Custom generated mouse model solutions for ZUFSP
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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