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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZUFSP Gene

protein-coding   GIFtS: 45
GCID: GC06M116956

zinc finger with UFM1-specific peptidase domain

(Previous name: chromosome 6 open reading frame 113 )
(Previous symbol: C6orf113)
  Search for ZUFSP
in
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 Human Malady Compendium 
Biological research products
for ZUFSP    

Aliases
for ZUFSP gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Zinc Finger With UFM1-Specific Peptidase Domain1 2
C6orf1131 2 3
DJ412I7.31
Chromosome 6 Open Reading Frame 1131
Zinc Finger With UFM1-Specific Peptidase Domain Protein2

External Ids:    HGNC: 212241   Entrez Gene: 2213022   Ensembl: ENSG000001539757   UniProtKB: Q96AP43   

Export aliases for ZUFSP gene to outside databases

Previous GC identifers: GC06M117064 GC06M114536


Summaries
for ZUFSP gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
  --

Genomic Views
for ZUFSP gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000006.11  NC_018917.1  NT_025741.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the ZUFSP gene promoter:
         Nkx3-1   ISGF-3   AML1a   p53   FOXD3   Nkx3-1 v1   Nkx3-1 v2   HFH-1   FOXJ2 (long isoform)   FOXJ2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: ZUFSP promoter sequence
   Search SABiosciences Chromatin IP Primers for ZUFSP

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZUFSP


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6q22.1   Ensembl cytogenetic band:  6q22.1   HGNC cytogenetic band: 6q22.31

ZUFSP Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZUFSP gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M116956:  view genomic region     (about GC identifiers)

Start:
 116,956,781 bp from pter      End:
 116,989,973 bp from pter
Size:
 33,193 bases      Orientation:
 minus strand

Proteins
for ZUFSP gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: ZUFSP_HUMAN, Q96AP4 (See protein sequence)
Recommended Name: Zinc finger with UFM1-specific peptidase domain protein  
Size: 578 amino acids; 65959 Da
Caution: Although related to the Ufm1-specific proteases, it lacks the conserved His active site, suggesting that it is
probably inactive
Sequence caution: Sequence=CAI20499.1; Type=Erroneous gene model prediction;
Secondary accessions: Q5TD92 Q6PJH7 Q96NV6
Alternative splicing: 2 isoforms:  Q96AP4-1   Q96AP4-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ZUFSP: NX_Q96AP4

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q96AP4

    • ZUFSP Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_659499.2  
    ENSEMBL proteins: 
     ENSP00000357565   ENSP00000357562  

    Human Recombinant Protein Products: 
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    OriGene Protein Over-expression Lysate: ZUFSP
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    Novus Biologicals ZUFSP Protein
    Novus Biologicals ZUFSP Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for ZUFSP

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular IEA--


    ZUFSP for ontologies           About GeneDecksing



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    Uscn Antibodies for ZUFSP
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    Uscn ELISAs and CLIAs for ZUFSP

    Protein Domains /
    Families
    for ZUFSP gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    ZUFSP for domains           About GeneDecksing

    3 InterPro domains/families:
     IPR015880 Znf_C2H2-like
     IPR012462 Peptidase_C78_UfSP1/2
     IPR007087 Znf_C2H2

    Graphical View of Domain Structure for InterPro Entry Q96AP4

    ProtoNet protein and cluster: Q96AP4

    1 Blocks protein family: IPB012462 Protein of unknown function DUF1671

    UniProtKB/Swiss-Prot: ZUFSP_HUMAN, Q96AP4
    Similarity: Contains 3 C2H2-type zinc fingers


    Function
    for ZUFSP gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    miRNA
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    SwitchGear 3'UTR luciferase reporter plasmid: ZUFSP 3' UTR sequence
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ZUFSP (see all 4)
    OriGene shRNA RFP: ZUFSP
    OriGene siRNA: ZUFSP
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ZUFSP

    Gene Editing
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    Clone
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    Cell Line
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    Search LifeMap BioReagents cell lines for ZUFSP

    In Situ Assay
    Products:       
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008270zinc ion binding IEA--


    ZUFSP for ontologies           About GeneDecksing



    Pathways & Interactions
    for ZUFSP gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZUFSP

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    2 Interacting proteins for ZUFSP (Q96AP42, 3 ENSP000003575654) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SHCBP1Q8NEM22, 3, ENSP000003064734MINT-66550 I2D: score=3 STRING: ENSP00000306473
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    Drugs & Compounds
    for ZUFSP gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZUFSP
    Search CenterWatch for drugs/clinical trials and news about ZUFSP 

    Transcripts
    for ZUFSP gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for ZUFSP gene: 
    NM_145062.2  

    Unigene Cluster for ZUFSP:

    Zinc finger with UFM1-specific peptidase domain
    Hs.29857  [show with all ESTs]
    Unigene Representative Sequence: BX537872
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000485498 ENST00000368576(uc003pxf.2 uc010kef.2) ENST00000368573
    ENST00000471919

    miRNA
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    SwitchGear 3'UTR luciferase reporter plasmid: ZUFSP 3' UTR sequence
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for ZUFSP (see all 4)
    OriGene shRNA RFP: ZUFSP
    OriGene siRNA: ZUFSP
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat ZUFSP
    Clone
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    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for ZUFSP (see all 2)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: ZUFSP (NM_145062)
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    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat ZUFSP
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    Additional cDNA sequence: 

    AK054582.1 AK307523.1 BC015420.2 BC016879.1 BX537872.1 

    8 DOTS entries:

    DT.410943  DT.100748697  DT.100748698  DT.92414109  DT.91856803  DT.102822368  DT.121386468  DT.121386455 

    24/85 AceView cDNA sequences (see all 85):

    BU507590 BP349315 BU156659 BM784058 BC016879 AW090802 CB528391 BU172921 
    BP335771 CD365600 BI712472 BM710960 BM932088 BX537872 BU430502 BM977499 
    AW104433 CR602085 BM931475 BE217738 BI712711 AI198475 CB115062 BI560691 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for ZUFSP    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
    SP1:                                                            
    SP2:                    -                                       


    ECgene alternative splicing isoforms for ZUFSP

    Expression
    for ZUFSP gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    ZUFSP expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TGAAGTATAT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    ZUFSP expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    TestisSeminiferous TubulesSecondary SpermatocyteGerm Cells, Male Gametocytes
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See ZUFSP Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZUFSP

    SOURCE GeneReport for Unigene cluster: Hs.29857
        SABiosciences Custom PCR Arrays for ZUFSP
    Primer
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    In Situ
    Assay Products:     
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for ZUFSP

    Orthologs
    for ZUFSP gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of eukaryotes.

    Orthologs for ZUFSP gene from 8/22 species (see all 22)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    mouse
    (Mus musculus)    		 Mammalia Zufsp1 , 5 zinc finger with UFM1-specific peptidase domain1, 5 86.65(n)1
    82.38(a)1    		   10 (18.85 cM)5
    725801  NM_028287.21  NP_082563.11 
     339269365 
    chicken
    (Gallus gallus)    		 Aves ZUFSP1 zinc finger with UFM1-specific peptidase domain 71.78(n)
    72.18(a)    		   421739  XM_419771.3  XP_419771.1 
    lizard
    (Anolis carolinensis)    		 Reptilia ZUFSP6
    		 --
    		 69(a)
    		 1 ↔ 1
    		 1(185974300-185977178)
    African clawed frog
    (Xenopus laevis)    		 Amphibia Xl.197812 Xenopus laevis transcribed sequence with weak similarity more 73.06(n)    BQ398904.1 
    zebrafish
    (Danio rerio)    		 Actinopterygii 570649222   -- 70(n)    57064922 
    mosquito
    (Anopheles gambiae)    		 Insecta AgaP_AGAP0096081 AGAP009608-PA 44.07(n)
    37.66(a)    		   1278982  XM_318637.4  XP_318637.4 
    thale cress
    (Arabidopsis thaliana)    		 eudicotyledons AT5G246806
    		 Peptidase C78, ubiquitin fold modifier-specific pe...
    		 26(a)
    		 1 ↔ 1
    		 5(8453602-8455518)
    rice
    (Oryza sativa)    		 Liliopsida --
    		 peptidase family C78 domain containing protein, ex...
    		 24(a)
    		 1 ↔ 1
    		 2(391819-395803)


    ENSEMBL Gene Tree for ZUFSP (if available)
    TreeFam Gene Tree for ZUFSP (if available) 

    Paralogs
    for ZUFSP gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    		  --

    Genomic Variants
    for ZUFSP gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/604 NCBI SNPs in ZUFSP are shown (see all 604)     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 6 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs132147591,2
    		C--116956281(+) TGGCCA/GGGATT 1 -- int10--------
    rs22956911,2
    		C,F,H,--116956404(+) AATCAA/GTGCAA 1 -- int18Minor allele frequency- G:0.05NS EA NA WA 774
    rs1889996211,2
    		--116956474(+) TTACTA/GTATAT 1 -- int10--------
    rs22956921,2
    		C,F,A,H,--116956489(+) TCTAAC/TGGAAG 1 -- int127Minor allele frequency- T:0.39EA NS NA WA CSA 2950
    rs2009949261,2
    		--116956567(+) AGATT-/ATTTCT 1 -- int10--------
    rs770042161,2
    		C,F,--116956575(+) TCTTGG/AGCAAA 1 -- int11Minor allele frequency- A:0.05NA 120
    rs1808849561,2
    		--116956595(+) TCTCAA/GGGCTT 1 -- int10--------
    rs1441976111,2
    		--116956630(+) TAATAC/GTACTT 1 -- int10--------
    rs1855889271,2
    		--116956695(+) AGTACC/TTAACA 1 -- int10--------
    rs1887332801,2
    		--116956748(+) AAACTA/GGTTTC 1 -- int10--------

    HapMap Linkage Disequilibrium report for ZUFSP (116956781 - 116989973 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for ZUFSP: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing ZUFSP
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    Disorders / Diseases
    for ZUFSP gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    		   --

    Publications
    for ZUFSP gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZUFSP gene, integrated from 9 sources (see all 12):
    (articles sorted by number of sources associating them with ZUFSP)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)1, 2 Mungall A.J.... Beck S. (2003)
    4. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    5. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    6. Ubiquitin ligase substrate identification through qua ntitative proteomics at both the protein and peptide levels. (PubMed id 21987572)1 Lee K.A....Doedens J.R. (2011)
    7. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    8. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    9. Lysine acetylation targets protein complexes and co-regulates major cellular functions. (PubMed id 19608861)2 Choudhary C.... Mann M. (2009)
    10. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)

    External Searches for ZUFSP gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing ZUFSP gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 221302 HGNC: 21224 AceView: C6orf113 Ensembl:ENSG00000153975 euGenes: HUgn221302
    ECgene: ZUFSP H-InvDB: ZUFSP

    Other Databases showing ZUFSP gene

    (According to HUGE)
    About This Section
    		   --

    Specialized Databases showing ZUFSP gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for ZUFSP Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for ZUFSP gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    		Patent Information for ZUFSP gene:
    Search GeneIP for patents involving ZUFSP

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    In Situ Hybridization Assays from
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    About This Section

     
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     ZUFSP Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for ZUFSP
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    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

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