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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

ZSWIM8-AS1 Gene

RNA gene   GIFtS: 28
GCID: GC10M075558

ZSWIM8 Antisense RNA 1

  Search for ZSWIM8-AS1
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Subcategory (RNA class): non-coding RNA

Quality score for this RNA gene is 3

Aliases
ZSWIM8 Antisense RNA 11 2     Glucosaminyl N-Deacetylase/N-Sulfotransferase 23
EC 2.8.2.83     N-Heparan Sulfate Sulfotransferase 23
HSST23     N-HSST 23
NDST-23     

External Ids:    HGNC: 451031   Entrez Gene: 1005073312   Ensembl: ENSG000001665077   UniProtKB: P528493   

Export aliases for ZSWIM8-AS1 gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for ZSWIM8-AS1 Gene: 
ZSWIM8-AS1 (ZSWIM8 antisense RNA 1) is an RNA gene, and is affiliated with the non-coding RNA class. An important paralog of this gene is HS3ST2.

UniProtKB/Swiss-Prot: NDST2_HUMAN, P52849
Function: Essential bifunctional enzyme that catalyzes both the N-deacetylation and the N-sulfation of glucosamine
(GlcNAc) of the glycosaminoglycan in heparan sulfate. Modifies the GlcNAc-GlcA disaccharide repeating sugar
backbone to make N-sulfated heparosan, a prerequisite substrate for later modifications in heparin biosynthesis.
Plays a role in determining the extent and pattern of sulfation of heparan sulfate




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000010.10  NC_018921.2  NT_030059.13  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for ZSWIM8-AS1
         Other transcription factors

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Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat ZSWIM8-AS1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Ensembl cytogenetic band:  10q22.2   HGNC cytogenetic band: 10q22.2

ZSWIM8-AS1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
ZSWIM8-AS1 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10M075558:  view genomic region     (about GC identifiers)

Start:
75,556,272 bp from pter      End:
75,571,589 bp from pter
Size:
15,318 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: NDST2_HUMAN, P52849 (See protein sequence)
Recommended Name: Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 2  
Size: 883 amino acids; 100875 Da
Subunit: Monomer (By similarity)
Subcellular location: Golgi apparatus membrane; Single-pass type II membrane protein (By similarity)
Miscellaneous: The presence of 4 different heparan sulfate N-deacetylase/N-sulfotransferase enzymes in mammals, as
well as differences in their enzyme activity suggest that some initiate heparan sulfate modification/sulfation
reactions, whereas other later on fill in or extend already modified heparan sulfate sequences
Secondary accessions: Q2TB32 Q59H89
Alternative splicing: 2 isoforms:  P52849-1   P52849-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for ZSWIM8-AS1: NX_P52849

Explore proteomics data for ZSWIM8-AS1 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_P52849

  • ZSWIM8-AS1 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    ZSWIM8-AS1 Protein Expression

    ENSEMBL proteins: 
     ENSP00000475031   ENSP00000310657   ENSP00000392733   ENSP00000299641  
    Reactome Protein details: P52849
    Human Recombinant Protein Products for ZSWIM8-AS1: 
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    Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000139Golgi membrane ----
    GO:0005794Golgi apparatus ----
    GO:0016021integral to membrane ----

    ZSWIM8-AS1 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    LNCRNA: Long non-coding RNAs

    3 InterPro protein domains:
     IPR027417 P-loop_NTPase
     IPR021930 Heparan_SO4_deacetylase
     IPR000863 Sulfotransferase_dom

    Graphical View of Domain Structure for InterPro Entry P52849

    ProtoNet protein and cluster: P52849

    UniProtKB/Swiss-Prot: NDST2_HUMAN, P52849
    Similarity: Belongs to the sulfotransferase 1 family. NDST subfamily


    ZSWIM8-AS1 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: NDST2_HUMAN, P52849
    Function: Essential bifunctional enzyme that catalyzes both the N-deacetylation and the N-sulfation of glucosamine
    (GlcNAc) of the glycosaminoglycan in heparan sulfate. Modifies the GlcNAc-GlcA disaccharide repeating sugar
    backbone to make N-sulfated heparosan, a prerequisite substrate for later modifications in heparin biosynthesis.
    Plays a role in determining the extent and pattern of sulfation of heparan sulfate
    Catalytic activity: 3'-phosphoadenylyl sulfate + [heparan sulfate]-glucosamine = adenosine 3',5'-bisphosphate +
    [heparan sulfate]-N-sulfoglucosamine
    Biophysicochemical properties: Kinetic parameters: KM=4.7 uM for K5 polysaccharide; KM=0.76 uM for N-acetylated
    HS-II;

         Enzyme Number (IUBMB): EC 2.8.2.81

         Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008146sulfotransferase activity ----
    GO:0015016[heparan sulfate]-glucosamine N-sulfotransferase activity ----
    GO:0016787hydrolase activity ----
    GO:0019213deacetylase activity ----
         
    ZSWIM8-AS1 for ontologies           About GeneDecksing


    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section

    Pathways by sourceSee SuperPaths
    Show all pathways


    5/18        Reactome Pathways for ZSWIM8-AS1 (see all 18)
        MPS VI - Maroteaux-Lamy syndrome
    Metabolism
    Disease
    HS-GAG biosynthesis
    MPS II - Hunter syndrome


    UniProtKB/Swiss-Prot: NDST2_HUMAN, P52849
    Pathway: Glycan metabolism; heparan sulfate biosynthesis
    Pathway: Glycan metabolism; heparin biosynthesis


    ZSWIM8-AS1 for pathways           About GeneDecksing

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for ZSWIM8-AS1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 23)

    5/26 Interacting proteins for ZSWIM8-AS1 (P528493 ENSP000002996414) via UniProtKB, MINT, STRING, and/or I2D (see all 26)

    InteractantInteraction Details
    GeneCardExternal ID(s)
    GPC5P783333, ENSP000003662674I2D: score=1 STRING: ENSP00000366267
    CDC27P302603I2D: score=4 
    GRB2P629933I2D: score=2 
    FGFR3P226073I2D: score=1 
    EXT1ENSP000003674464STRING: ENSP00000367446
    About this table

    Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0002002regulation of angiotensin levels in blood ----
    GO:0005975carbohydrate metabolic process ----
    GO:0006024glycosaminoglycan biosynthetic process ----
    GO:0009987cellular process ----
    GO:0015012heparan sulfate proteoglycan biosynthetic process ----

    ZSWIM8-AS1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for ZSWIM8-AS1 (NDST2)

    Search CenterWatch for drugs/clinical trials and news about ZSWIM8-AS1

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    Unigene Cluster for ZSWIM8-AS1:

    ZSWIM8 antisense RNA 1
    Hs.631828  [show with all ESTs]
    Unigene Representative Sequence: NR_038357
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000603027 ENST00000456638 ENST00000603706 ENST00000309979(uc010qks.1 uc001jvl.1 uc009xro.2 uc010qku.1)
    ENST00000429742 ENST00000463410 ENST00000465929 ENST00000398701 ENST00000299641(uc001jvk.2 uc010qkt.1)

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    Additional mRNA sequence: 

    AL080182.1 NR_038357.1 

    4 DOTS entries:

    DT.102843949  DT.91864741  DT.416369  DT.92439530 

    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for ZSWIM8-AS1 (see all 7)    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b · 2c ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b · 10c ^ 11a · 11b ^ 12a · 12b · 12c ^ 13a · 13b
    SP1:                          -           -                                                                                               -               
    SP2:                                                                                                                    -                                 
    SP3:                                                                                                                    -                 -               
    SP4:                                                                                                                                                      
    SP5:                                                                                                                                                      


    ECgene alternative splicing isoforms for ZSWIM8-AS1

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    Expression evidence for ZSWIM8-AS1:none

    ZSWIM8-AS1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    ZSWIM8-AS1 Expression
    About this image


    See ZSWIM8-AS1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for ZSWIM8-AS1

    SOURCE GeneReport for Unigene cluster: Hs.631828
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for ZSWIM8-AS1 gene from 5/12 species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves NDST26
    Uncharacterized protein
    82(a)
    1 ↔ 1
    6(15358310-15382752)
    lizard
    (Anolis carolinensis)
    Reptilia NDST26
    Uncharacterized protein
    81(a)
    1 ↔ 1
    GL343196.1(1421790-1502256)
    zebrafish
    (Danio rerio)
    Actinopterygii ndst2a6
    NDST26
    Uncharacterized protein
    74(a)
    73(a)
    1 ↔ many
    1 ↔ many
    13(22205421-22235071)
    12(35983716-36006062)
    fruit fly
    (Drosophila melanogaster)
    Insecta sfl6
    sulfateless
    46(a)
    1 → many
    3L(6488780-6543108)
    worm
    (Caenorhabditis elegans)
    Secernentea hst-16
    Bifunctional heparan sulfate N-deacetylase/N-sulfo...
    41(a)
    1 → many
    IV(8688273-8691513)
            Species with no ortholog for ZSWIM8-AS1

    ENSEMBL Gene Tree for ZSWIM8-AS1 (if available)
    TreeFam Gene Tree for ZSWIM8-AS1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for ZSWIM8-AS1 gene
    HS3ST22  HS3ST12  HS3ST3B12  HS3ST42  HS3ST62  HS3ST52  HS3ST3A12  NDST12  
    NDST42  NDST32  

    ZSWIM8-AS1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section
    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for ZSWIM8-AS1 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with ZSWIM8-AS1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Characterization of the N-deacetylase domain from the heparan sulfate N-deacetylase/N-sulfotransferase 2. (PubMed id 16343444)2 Duncan M.B.... Liu J. (2006)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    3. Antibody-based assay for N-deacetylase activity of heparan sulfate/heparin N-deacetylase/N-sulfotransferase (NDST): novel characteristics of NDST-1 and -2. (PubMed id 12634318)2 van den Born J....Berden J.H.M. (2003)
    4. Overexpression of different isoforms of glucosaminyl N-deacetylase/N- sulfotransferase results in distinct heparan sulfate N-sulfation patterns. (PubMed id 10758005)2 Pikas D.S.... Kjellen L. (2000)
    5. cDNA cloning, genomic organization and chromosomal localization of human heparan glucosaminyl N-deacetylase/N-sulphotransferase-2. (PubMed id 9601056)2 Humphries D.E.... Karlinsky J.B. (1998)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 100507331 HGNC: 45103 Ensembl:ENSG00000166507 euGenes: HUgn100507331 ECgene: ZSWIM8-AS1
    H-InvDB: ZSWIM8-AS1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
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    (Patent information from GeneIP,
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    IP news from LifeMap Sciences, Inc.)
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    Patent Information for ZSWIM8-AS1 gene:
    Search GeneIP for patents involving ZSWIM8-AS1

    GeneCards and IP:
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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