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Aliases for ZSWIM8-AS1 Gene

Subcategory (RNA class) for ZSWIM8-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for ZSWIM8-AS1 Gene

  • ZSWIM8 Antisense RNA 1 2 3 5

External Ids for ZSWIM8-AS1 Gene

Previous GeneCards Identifiers for ZSWIM8-AS1 Gene

  • GC10M075558

Summaries for ZSWIM8-AS1 Gene

GeneCards Summary for ZSWIM8-AS1 Gene

ZSWIM8-AS1 (ZSWIM8 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for ZSWIM8-AS1 Gene

Genomics for ZSWIM8-AS1 Gene

Regulatory Elements for ZSWIM8-AS1 Gene

Enhancers for ZSWIM8-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F072888 0.2 ENCODE 18.2 +911.9 911868 1.4 ZEB1 PRDM10 ZNF600 ZNF548 YY2 ZEB2 MNT ZNF83 ZNF264 ZNF585B ENSG00000272140 BMS1P4 GLUD1P3 DUSP8P5 ECD ZSWIM8 ENSG00000242288 ZSWIM8-AS1 ENSG00000227540 AGAP5
GH10F073643 0.9 Ensembl ENCODE 11.4 +157.2 157199 1.2 HDGF ATF1 PKNOX1 ARID4B YBX1 ZNF48 ZNF121 GLIS2 ZNF143 ZNF202 MYOZ1 AGAP5 GLUD1P3 ENSG00000272140 DUSP8P5 ENSG00000242288 BMS1P4 ECD ZSWIM8 ZSWIM8-AS1
GH10F073584 1 Ensembl ENCODE 11.4 +215.1 215059 2.9 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 FOS SP5 KAT8 NUDT13 CFAP70 AGAP5 GLUD1P3 ENSG00000272140 DUSP8P5 HMGN2P34 LOC102723439 USP54 ENSG00000242288
GH10F073634 0.2 ENCODE 11.4 +165.9 165872 2.2 ZNF263 ZNF202 CTCF L3MBTL2 REST ZNF16 RAD21 ATF2 YY1 OSR2 ENSG00000272140 GLUD1P3 DUSP8P5 BMS1P4 ECD ENSG00000242288 ZSWIM8 AGAP5 AP3M1 ZSWIM8-AS1
GH10F073646 1.5 FANTOM5 Ensembl ENCODE 11.4 +149.4 149406 11.2 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 FOS ENSG00000272140 GLUD1P3 DUSP8P5 BMS1P4 ECD MYOZ1 ENSG00000242288 ZSWIM8 AGAP5 AP3M1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around ZSWIM8-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for ZSWIM8-AS1 Gene

Chromosome:
10
Start:
73,796,514 bp from pter
End:
73,801,399 bp from pter
Size:
4,886 bases
Orientation:
Minus strand

Genomic View for ZSWIM8-AS1 Gene

Genes around ZSWIM8-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
ZSWIM8-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for ZSWIM8-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for ZSWIM8-AS1 Gene

Proteins for ZSWIM8-AS1 Gene

Post-translational modifications for ZSWIM8-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for ZSWIM8-AS1 Gene

Domains & Families for ZSWIM8-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for ZSWIM8-AS1 Gene

Function for ZSWIM8-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for ZSWIM8-AS1 Gene

Localization for ZSWIM8-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for ZSWIM8-AS1 Gene

Pathways & Interactions for ZSWIM8-AS1 Gene

SuperPathways for ZSWIM8-AS1 Gene

No Data Available

Interacting Proteins for ZSWIM8-AS1 Gene

Gene Ontology (GO) - Biological Process for ZSWIM8-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for ZSWIM8-AS1 Gene

Transcripts for ZSWIM8-AS1 Gene

mRNA/cDNA for ZSWIM8-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for ZSWIM8-AS1 Gene

ZSWIM8 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for ZSWIM8-AS1 Gene

No ASD Table

Relevant External Links for ZSWIM8-AS1 Gene

GeneLoc Exon Structure for
ZSWIM8-AS1
ECgene alternative splicing isoforms for
ZSWIM8-AS1

Expression for ZSWIM8-AS1 Gene

mRNA expression in normal human tissues for ZSWIM8-AS1 Gene

Protein differential expression in normal tissues from HIPED for ZSWIM8-AS1 Gene

This gene is overexpressed in Bone marrow mesenchymal stem cell (49.2), Adipocyte (10.8), and Spleen (9.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from MaxQB and MOPED for ZSWIM8-AS1 Gene



Protein tissue co-expression partners for ZSWIM8-AS1 Gene

SOURCE GeneReport for Unigene cluster for ZSWIM8-AS1 Gene:

Hs.631828
genes like me logo Genes that share expression patterns with ZSWIM8-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for ZSWIM8-AS1 Gene

Orthologs for ZSWIM8-AS1 Gene

Evolution for ZSWIM8-AS1 Gene

ENSEMBL:
Gene Tree for ZSWIM8-AS1 (if available)
TreeFam:
Gene Tree for ZSWIM8-AS1 (if available)

No data available for Orthologs for ZSWIM8-AS1 Gene

Paralogs for ZSWIM8-AS1 Gene

No data available for Paralogs for ZSWIM8-AS1 Gene

Variants for ZSWIM8-AS1 Gene

Sequence variations from dbSNP and Humsavar for ZSWIM8-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1048698 -- 73,801,459(+) CGCAG(A/C)AAACA intron-variant, downstream-variant-500B, upstream-variant-2KB, reference, missense
rs11000780 -- 73,799,319(+) TACCC(A/G)GGTCC intron-variant, reference, synonymous-codon
rs112454624 -- 73,797,374(+) GGGGT(C/T)AGGCA intron-variant, nc-transcript-variant
rs113471254 -- 73,802,097(+) CAAGG(A/G)GTCTC intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs113485129 -- 73,797,273(+) ACAGG(A/C/T)AGGAT nc-transcript-variant, splice-donor-variant

Structural Variations from Database of Genomic Variants (DGV) for ZSWIM8-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv46n21 CNV loss 19592680
nsv1035634 CNV gain 25217958
nsv551516 CNV loss 21841781
nsv551517 CNV loss 21841781
nsv825468 CNV gain 20364138
nsv831912 CNV gain 17160897

Relevant External Links for ZSWIM8-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
ZSWIM8-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for ZSWIM8-AS1 Gene

Disorders for ZSWIM8-AS1 Gene

Relevant External Links for ZSWIM8-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
ZSWIM8-AS1

No disorders were found for ZSWIM8-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for ZSWIM8-AS1 Gene

Publications for ZSWIM8-AS1 Gene

No publications were found for ZSWIM8-AS1 Gene.

Products for ZSWIM8-AS1 Gene

Sources for ZSWIM8-AS1 Gene

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